Wall clock time and date at job start Wed Apr 1 2020 00:35:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09000 * 109.58879 * 2 1 4 4 C 1.53198 * 109.70581 * 239.64506 * 2 1 3 5 5 H 1.09006 * 109.49268 * 65.55949 * 4 2 1 6 6 N 1.46503 * 109.49687 * 305.49531 * 4 2 1 7 7 C 1.34774 * 119.99801 * 154.99557 * 6 4 2 8 8 O 1.21557 * 120.00214 * 0.02562 * 7 6 4 9 9 C 1.47837 * 120.00103 * 179.97438 * 7 6 4 10 10 C 1.40031 * 120.55769 * 358.41863 * 9 7 6 11 11 C 1.38356 * 118.28883 * 179.97438 * 10 9 7 12 12 C 1.38344 * 119.30431 * 0.02562 * 11 10 9 13 13 N 1.31930 * 121.08319 * 0.02562 * 12 11 10 14 14 C 1.31696 * 121.87489 * 359.67869 * 13 12 11 15 15 C 1.50703 * 119.71881 * 180.28831 * 14 13 12 16 16 F 1.39900 * 109.46987 * 120.20888 * 15 14 13 17 17 F 1.39894 * 109.47474 * 240.21138 * 15 14 13 18 18 C 1.53039 * 109.31484 * 185.50965 * 4 2 1 19 19 C 1.53033 * 109.53842 * 61.36627 * 18 4 2 20 20 C 1.53626 * 109.24222 * 298.51148 * 19 18 4 21 21 N 1.46924 * 109.58660 * 120.28760 * 2 1 3 22 22 C 1.36935 * 120.63173 * 353.51327 * 21 2 1 23 23 H 1.07999 * 119.99583 * 31.25732 * 22 21 2 24 24 C 1.38812 * 120.00227 * 211.25669 * 22 21 2 25 25 N 1.31612 * 120.00001 * 19.31950 * 24 22 21 26 26 Si 1.86799 * 119.99790 * 199.32251 * 24 22 21 27 27 H 1.48497 * 109.46923 * 265.00733 * 26 24 22 28 28 H 1.48496 * 109.47675 * 25.01006 * 26 24 22 29 29 H 1.48497 * 109.47057 * 145.01364 * 26 24 22 30 30 H 1.08999 * 109.47538 * 299.71460 * 1 2 3 31 31 H 1.09004 * 109.47221 * 59.71468 * 1 2 3 32 32 H 1.09001 * 109.47333 * 179.71329 * 1 2 3 33 33 H 0.96992 * 120.00092 * 334.99445 * 6 4 2 34 34 H 1.07997 * 120.85516 * 359.96057 * 10 9 7 35 35 H 1.08004 * 120.34671 * 179.97438 * 11 10 9 36 36 H 1.07997 * 119.46130 * 179.97438 * 12 11 10 37 37 H 1.09002 * 109.46507 * 0.21381 * 15 14 13 38 38 H 1.09001 * 109.46200 * 181.39066 * 18 4 2 39 39 H 1.09006 * 109.45600 * 301.35804 * 18 4 2 40 40 H 1.08994 * 109.49779 * 58.58574 * 19 18 4 41 41 H 1.08999 * 109.49921 * 178.65134 * 19 18 4 42 42 H 1.09005 * 109.74258 * 295.11641 * 20 19 18 43 43 H 1.09000 * 109.66312 * 174.54815 * 20 19 18 44 44 H 0.97002 * 120.00387 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0465 -0.7289 -1.2445 5 1 1.7689 -0.1671 -2.1365 6 7 1.4565 -2.0684 -1.3069 7 6 1.3361 -2.6971 -2.4928 8 8 1.7176 -2.1531 -3.5107 9 6 0.7413 -4.0491 -2.5558 10 6 0.3292 -4.7006 -1.3868 11 6 -0.2219 -5.9646 -1.5001 12 6 -0.3466 -6.5392 -2.7524 13 7 0.0515 -5.9019 -3.8369 14 6 0.5766 -4.6955 -3.7812 15 6 1.0090 -4.0095 -5.0515 16 9 0.3001 -2.8126 -5.1996 17 9 2.3795 -3.7353 -4.9903 18 6 3.5706 -0.8444 -1.1674 19 6 3.9601 -1.6608 0.0669 20 6 3.4659 -0.9376 1.3290 21 7 2.0225 -0.6981 1.1953 22 6 1.1534 -1.1126 2.1689 23 1 0.1470 -1.4035 1.9062 24 6 1.5658 -1.1589 3.4936 25 7 2.6187 -0.4699 3.8794 26 14 0.6264 -2.1993 4.7284 27 1 -0.3656 -1.3513 5.4368 28 1 -0.0780 -3.2962 4.0173 29 1 1.5762 -2.7772 5.7128 30 1 -0.3634 0.5094 0.8925 31 1 -0.3634 0.5183 -0.8874 32 1 -0.3634 -1.0276 -0.0051 33 1 1.1524 -2.5027 -0.4947 34 1 0.4389 -4.2288 -0.4216 35 1 -0.5506 -6.4976 -0.6201 36 1 -0.7760 -7.5259 -2.8438 37 1 0.8061 -4.6597 -5.9025 38 1 3.9430 -1.3407 -2.0635 39 1 4.0071 0.1519 -1.0962 40 1 3.5036 -2.6488 0.0085 41 1 5.0445 -1.7630 0.1082 42 1 3.9860 0.0144 1.4353 43 1 3.6537 -1.5587 2.2049 44 1 2.9067 -0.5020 4.8052 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000993563590.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:35:14 Heat of formation + Delta-G solvation = -89.096134 kcal Electronic energy + Delta-G solvation = -31333.082480 eV Core-core repulsion = 26921.221680 eV Total energy + Delta-G solvation = -4411.860799 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -49.80597 -47.81260 -41.81657 -40.62458 -39.00068 -35.67901 -34.47641 -33.77015 -33.33666 -33.02378 -31.05251 -28.17195 -27.63220 -26.82345 -25.68939 -24.02039 -23.28916 -22.45786 -21.96274 -20.34066 -19.28862 -18.55524 -18.34720 -18.21416 -18.10325 -17.29935 -16.89936 -16.39848 -16.28212 -16.12598 -15.73444 -15.68338 -15.30220 -14.95810 -14.70877 -14.61093 -14.48403 -14.29933 -14.15722 -14.08683 -14.04208 -13.56894 -13.20945 -12.96089 -12.87867 -12.73122 -12.43358 -12.35355 -12.30504 -12.18892 -11.93145 -11.70040 -11.40074 -11.15616 -11.12303 -11.02029 -10.67740 -10.49207 -10.41244 -9.92651 -8.59913 -7.82007 -5.28374 -0.58447 -0.06914 1.50431 1.53536 1.61144 1.81420 2.12412 2.38129 2.55100 2.61782 3.24272 3.33658 3.34533 3.56319 3.58129 3.71113 3.88398 3.98901 4.05587 4.09687 4.13638 4.19268 4.27775 4.35669 4.37814 4.55520 4.65464 4.75268 4.81736 4.93608 4.96579 4.97195 5.02826 5.11469 5.20749 5.33104 5.39865 5.44315 5.50525 5.58655 5.73492 5.78162 6.44462 6.52431 6.60818 7.17619 7.20585 7.88956 8.45159 9.24814 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.013750 B = 0.004220 C = 0.003598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2035.886999 B = 6634.041995 C = 7779.205081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.157 3.843 3 H 0.030 0.970 4 C 0.146 3.854 5 H 0.079 0.921 6 N -0.688 5.688 7 C 0.544 3.456 8 O -0.549 6.549 9 C -0.166 4.166 10 C -0.050 4.050 11 C -0.142 4.142 12 C 0.123 3.877 13 N -0.475 5.475 14 C 0.082 3.918 15 C 0.330 3.670 16 F -0.200 7.200 17 F -0.200 7.200 18 C -0.115 4.115 19 C -0.124 4.124 20 C 0.182 3.818 21 N -0.594 5.594 22 C -0.252 4.252 23 H 0.080 0.920 24 C -0.044 4.044 25 N -0.933 5.933 26 Si 0.955 3.045 27 H -0.294 1.294 28 H -0.258 1.258 29 H -0.302 1.302 30 H 0.048 0.952 31 H 0.060 0.940 32 H 0.056 0.944 33 H 0.408 0.592 34 H 0.153 0.847 35 H 0.187 0.813 36 H 0.211 0.789 37 H 0.154 0.846 38 H 0.053 0.947 39 H 0.067 0.933 40 H 0.053 0.947 41 H 0.061 0.939 42 H -0.004 1.004 43 H 0.049 0.951 44 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.126 -12.678 -12.557 18.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.050 3.950 3 H 0.048 0.952 4 C 0.040 3.960 5 H 0.097 0.903 6 N -0.339 5.339 7 C 0.330 3.670 8 O -0.429 6.429 9 C -0.172 4.172 10 C -0.076 4.076 11 C -0.161 4.161 12 C -0.034 4.034 13 N -0.184 5.184 14 C -0.057 4.057 15 C 0.275 3.725 16 F -0.181 7.181 17 F -0.181 7.181 18 C -0.154 4.154 19 C -0.163 4.163 20 C 0.057 3.943 21 N -0.318 5.318 22 C -0.382 4.382 23 H 0.098 0.902 24 C -0.240 4.240 25 N -0.578 5.578 26 Si 0.784 3.216 27 H -0.222 1.222 28 H -0.182 1.182 29 H -0.229 1.229 30 H 0.067 0.933 31 H 0.079 0.921 32 H 0.075 0.925 33 H 0.245 0.755 34 H 0.171 0.829 35 H 0.204 0.796 36 H 0.228 0.772 37 H 0.171 0.829 38 H 0.072 0.928 39 H 0.086 0.914 40 H 0.072 0.928 41 H 0.079 0.921 42 H 0.014 0.986 43 H 0.068 0.932 44 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -5.871 -12.611 -13.922 19.681 hybrid contribution 0.113 0.492 2.395 2.447 sum -5.757 -12.119 -11.528 17.689 Atomic orbital electron populations 1.21680 0.94196 1.01686 1.00798 1.20834 0.94526 0.93395 0.86249 0.95225 1.21339 0.92860 0.83045 0.98790 0.90310 1.45760 1.61301 1.18176 1.08651 1.18329 0.79117 0.85536 0.83970 1.90830 1.50297 1.67335 1.34404 1.20865 1.04193 0.96238 0.95885 1.22164 0.92407 0.95386 0.97690 1.22717 0.97549 0.94546 1.01266 1.23754 0.92426 1.00553 0.86710 1.67384 1.09940 1.06402 1.34629 1.21794 0.97487 0.92550 0.93910 1.20245 0.73357 0.82301 0.96564 1.92994 1.78382 1.50291 1.96479 1.93001 1.32951 1.94676 1.97457 1.21708 0.95471 1.00575 0.97604 1.22004 0.99717 0.98946 0.95668 1.20599 0.83519 0.95602 0.94621 1.44349 1.02743 1.65480 1.19190 1.19426 0.96447 1.36283 0.86029 0.90229 1.25803 0.99217 1.00194 0.98813 1.70215 1.29467 1.42076 1.16051 0.85456 0.77584 0.79384 0.79165 1.22176 1.18190 1.22876 0.93254 0.92083 0.92465 0.75464 0.82895 0.79577 0.77228 0.82940 0.92836 0.91432 0.92835 0.92053 0.98594 0.93212 0.94475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.32 7.75 71.98 0.56 -3.76 16 2 C 0.16 5.96 3.19 44.97 0.14 6.10 16 3 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 4 C 0.15 5.03 2.33 45.07 0.10 5.14 16 5 H 0.08 2.77 7.58 -2.38 -0.02 2.75 16 6 N -0.69 -22.02 3.42 -445.03 -1.52 -23.54 16 7 C 0.54 17.91 7.55 86.78 0.65 18.57 16 8 O -0.55 -21.04 11.00 -3.90 -0.04 -21.08 16 9 C -0.17 -4.54 5.85 -19.99 -0.12 -4.65 16 10 C -0.05 -1.04 9.65 22.73 0.22 -0.82 16 11 C -0.14 -1.94 10.10 22.32 0.23 -1.71 16 12 C 0.12 1.70 11.17 84.70 0.95 2.64 16 13 N -0.47 -9.95 10.24 -182.85 -1.87 -11.82 16 14 C 0.08 2.14 6.31 42.89 0.27 2.41 16 15 C 0.33 8.95 5.02 71.24 0.36 9.31 16 16 F -0.20 -6.44 15.10 44.97 0.68 -5.76 16 17 F -0.20 -6.53 14.96 44.97 0.67 -5.85 16 18 C -0.11 -3.97 5.58 30.62 0.17 -3.80 16 19 C -0.12 -4.53 5.95 30.82 0.18 -4.35 16 20 C 0.18 8.18 5.33 86.51 0.46 8.64 16 21 N -0.59 -26.28 2.62 -674.39 -1.77 -28.05 16 22 C -0.25 -12.00 8.49 84.03 0.71 -11.28 16 23 H 0.08 3.57 6.32 -2.91 -0.02 3.55 16 24 C -0.04 -2.25 4.82 84.86 0.41 -1.84 16 25 N -0.93 -52.16 11.58 21.65 0.25 -51.91 16 26 Si 0.96 40.92 29.60 68.60 2.03 42.95 16 27 H -0.29 -12.84 7.11 99.48 0.71 -12.13 16 28 H -0.26 -10.02 7.11 99.48 0.71 -9.31 16 29 H -0.30 -13.41 7.11 99.48 0.71 -12.70 16 30 H 0.05 1.84 7.64 -2.39 -0.02 1.82 16 31 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 32 H 0.06 1.87 6.39 -2.39 -0.02 1.86 16 33 H 0.41 12.76 5.89 -92.71 -0.55 12.21 16 34 H 0.15 3.03 6.52 -2.91 -0.02 3.01 16 35 H 0.19 1.15 8.06 -2.91 -0.02 1.13 16 36 H 0.21 1.03 8.06 -2.91 -0.02 1.00 16 37 H 0.15 2.93 8.11 -2.39 -0.02 2.91 16 38 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 39 H 0.07 2.28 8.14 -2.38 -0.02 2.26 16 40 H 0.05 1.94 7.53 -2.39 -0.02 1.92 16 41 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 42 H 0.00 -0.20 8.14 -2.38 -0.02 -0.22 16 43 H 0.05 2.51 6.37 -2.39 -0.02 2.50 16 44 H 0.25 13.56 8.31 -92.71 -0.77 12.79 16 Total: -1.00 -66.45 354.56 4.23 -62.22 By element: Atomic # 1 Polarization: 21.76 SS G_CDS: 0.50 Total: 22.25 kcal Atomic # 6 Polarization: 15.28 SS G_CDS: 5.30 Total: 20.59 kcal Atomic # 7 Polarization: -110.40 SS G_CDS: -4.91 Total: -115.32 kcal Atomic # 8 Polarization: -21.04 SS G_CDS: -0.04 Total: -21.08 kcal Atomic # 9 Polarization: -12.97 SS G_CDS: 1.35 Total: -11.61 kcal Atomic # 14 Polarization: 40.92 SS G_CDS: 2.03 Total: 42.95 kcal Total: -66.45 4.23 -62.22 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993563590.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.873 kcal (2) G-P(sol) polarization free energy of solvation -66.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds