Wall clock time and date at job start Wed Apr 1 2020 00:36:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08999 * 109.51999 * 2 1 4 4 C 1.53193 * 109.49518 * 120.08016 * 2 1 3 5 5 N 1.46922 * 108.77398 * 174.58753 * 4 2 1 6 6 C 1.34769 * 120.63251 * 126.37079 * 5 4 2 7 7 O 1.21556 * 120.00084 * 354.91704 * 6 5 4 8 8 C 1.47842 * 120.00255 * 174.91706 * 6 5 4 9 9 C 1.40031 * 120.55871 * 140.23081 * 8 6 5 10 10 C 1.38355 * 118.28555 * 179.73212 * 9 8 6 11 11 C 1.38355 * 119.30497 * 0.54771 * 10 9 8 12 12 C 1.50699 * 119.45998 * 179.74202 * 11 10 9 13 13 F 1.39897 * 109.47247 * 299.96844 * 12 11 10 14 14 F 1.39901 * 109.47408 * 59.97593 * 12 11 10 15 15 N 1.31926 * 121.07584 * 359.70961 * 11 10 9 16 16 C 1.31693 * 121.88143 * 0.02562 * 15 11 10 17 17 C 1.46926 * 118.73922 * 306.39222 * 5 4 2 18 18 C 1.53195 * 108.77662 * 53.60955 * 17 5 4 19 19 C 1.53038 * 109.31316 * 305.36489 * 18 17 5 20 20 H 1.08992 * 109.46259 * 181.37029 * 19 18 17 21 21 N 1.46498 * 109.45905 * 301.34831 * 19 18 17 22 22 C 1.36940 * 119.99943 * 274.99719 * 21 19 18 23 23 H 1.08006 * 119.99337 * 359.97438 * 22 21 19 24 24 C 1.38812 * 120.00343 * 179.72938 * 22 21 19 25 25 N 1.31615 * 119.99828 * 0.26601 * 24 22 21 26 26 Si 1.86794 * 119.99937 * 180.27526 * 24 22 21 27 27 H 1.48503 * 109.47244 * 359.97438 * 26 24 22 28 28 H 1.48504 * 109.47194 * 119.99411 * 26 24 22 29 29 H 1.48500 * 109.47174 * 239.99480 * 26 24 22 30 30 H 1.08997 * 109.46771 * 180.02562 * 1 2 3 31 31 H 1.08993 * 109.47151 * 300.08510 * 1 2 3 32 32 H 1.09006 * 109.46691 * 60.08230 * 1 2 3 33 33 H 1.09001 * 109.58615 * 54.80323 * 4 2 1 34 34 H 1.08999 * 109.58756 * 294.37702 * 4 2 1 35 35 H 1.08002 * 120.85321 * 359.97438 * 9 8 6 36 36 H 1.07998 * 120.34651 * 180.27625 * 10 9 8 37 37 H 1.09007 * 109.47000 * 179.97438 * 12 11 10 38 38 H 1.08001 * 119.71537 * 180.02562 * 16 15 11 39 39 H 1.08997 * 109.58849 * 293.82150 * 17 5 4 40 40 H 1.09005 * 109.70433 * 173.46778 * 17 5 4 41 41 H 1.08997 * 109.49831 * 185.41395 * 18 17 5 42 42 H 1.08997 * 109.49781 * 65.31499 * 18 17 5 43 43 H 0.96995 * 120.00535 * 94.99599 * 21 19 18 44 44 H 0.96999 * 119.99951 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0413 -0.7238 1.2496 5 7 3.5046 -0.8291 1.1696 6 6 4.2811 -0.3856 2.1779 7 8 3.7793 0.1902 3.1235 8 6 5.7433 -0.5995 2.1340 9 6 6.6225 0.4015 2.5653 10 6 7.9817 0.1492 2.5089 11 6 8.4249 -1.0677 2.0222 12 6 9.9048 -1.3440 1.9537 13 9 10.5180 -0.3979 1.1255 14 9 10.4538 -1.2652 3.2381 15 7 7.5731 -1.9904 1.6176 16 6 6.2707 -1.7996 1.6565 17 6 4.1053 -1.4267 -0.0307 18 6 3.5709 -0.6950 -1.2660 19 6 2.0409 -0.7230 -1.2484 20 1 1.6583 -0.2242 -2.1388 21 7 1.5785 -2.1130 -1.2308 22 6 1.4470 -2.8057 -2.4047 23 1 1.6838 -2.3271 -3.3435 24 6 1.0142 -4.1246 -2.3877 25 7 0.7251 -4.7076 -1.2436 26 14 0.8422 -5.0718 -3.9884 27 1 1.2257 -4.1966 -5.1252 28 1 1.7305 -6.2615 -3.9575 29 1 -0.5668 -5.5103 -4.1552 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5151 0.8892 32 1 -0.3633 0.5126 -0.8908 33 1 1.6053 -1.7216 1.2980 34 1 1.7637 -0.1580 2.1389 35 1 6.2490 1.3446 2.9362 36 1 8.6893 0.8960 2.8373 37 1 10.0696 -2.3425 1.5488 38 1 5.6050 -2.5792 1.3167 39 1 3.8376 -2.4818 -0.0867 40 1 5.1899 -1.3267 0.0125 41 1 3.9335 -1.1896 -2.1670 42 1 3.9160 0.3389 -1.2540 43 1 1.3654 -2.5427 -0.3877 44 1 0.4230 -5.6292 -1.2317 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036066591.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:36:53 Heat of formation + Delta-G solvation = -79.789999 kcal Electronic energy + Delta-G solvation = -29848.299423 eV Core-core repulsion = 25436.842168 eV Total energy + Delta-G solvation = -4411.457255 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.39805 -47.38255 -41.12675 -39.61555 -37.78147 -34.56428 -33.35215 -32.93448 -32.19762 -31.49435 -29.28036 -27.92900 -26.12714 -25.20922 -24.19163 -23.54161 -22.90757 -21.76465 -20.26392 -18.60911 -18.17654 -18.06915 -17.63944 -17.42648 -17.15878 -16.56963 -15.92707 -15.17257 -15.05403 -14.74855 -14.65266 -14.37952 -14.15921 -14.04745 -13.90722 -13.74742 -13.58836 -13.42098 -13.37162 -13.03367 -12.76499 -12.59998 -12.24446 -11.71027 -11.65200 -11.45471 -11.27682 -10.97557 -10.86700 -10.66038 -10.57935 -10.35263 -10.31112 -10.20375 -9.92128 -9.77768 -9.62860 -9.47816 -8.99810 -8.41239 -7.04980 -5.85492 -3.14292 0.17999 0.78527 2.55217 2.87472 2.99099 3.32017 3.37523 3.44167 3.45966 3.77691 4.00575 4.29531 4.34871 4.47166 4.52171 4.62764 4.67079 4.84308 5.04068 5.19491 5.20080 5.26809 5.41158 5.47014 5.50879 5.62471 5.63940 5.71915 5.83455 5.95697 5.96611 6.03802 6.12212 6.23427 6.28881 6.41459 6.50248 6.58767 6.66905 6.82589 6.90157 7.29716 7.46299 7.63737 8.08645 8.32878 9.44937 10.00234 10.35392 11.36806 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.013096 B = 0.003071 C = 0.002663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2137.514699 B = 9115.875448 C =10512.854255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.108 4.108 3 H 0.066 0.934 4 C 0.119 3.881 5 N -0.590 5.590 6 C 0.558 3.442 7 O -0.540 6.540 8 C -0.152 4.152 9 C -0.025 4.025 10 C -0.139 4.139 11 C 0.061 3.939 12 C 0.324 3.676 13 F -0.192 7.192 14 F -0.193 7.193 15 N -0.458 5.458 16 C 0.137 3.863 17 C 0.102 3.898 18 C -0.149 4.149 19 C 0.178 3.822 20 H 0.052 0.948 21 N -0.719 5.719 22 C -0.239 4.239 23 H 0.070 0.930 24 C -0.010 4.010 25 N -0.931 5.931 26 Si 0.904 3.096 27 H -0.281 1.281 28 H -0.292 1.292 29 H -0.292 1.292 30 H 0.071 0.929 31 H 0.044 0.956 32 H 0.054 0.946 33 H 0.080 0.920 34 H 0.087 0.913 35 H 0.151 0.849 36 H 0.147 0.853 37 H 0.135 0.865 38 H 0.178 0.822 39 H 0.092 0.908 40 H 0.073 0.927 41 H 0.077 0.923 42 H 0.049 0.951 43 H 0.384 0.616 44 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.882 9.791 6.559 18.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.128 4.128 3 H 0.084 0.916 4 C -0.003 4.003 5 N -0.320 5.320 6 C 0.345 3.655 7 O -0.419 6.419 8 C -0.157 4.157 9 C -0.051 4.051 10 C -0.159 4.159 11 C -0.078 4.078 12 C 0.270 3.730 13 F -0.173 7.173 14 F -0.174 7.174 15 N -0.166 5.166 16 C -0.021 4.021 17 C -0.020 4.020 18 C -0.191 4.191 19 C 0.068 3.932 20 H 0.070 0.930 21 N -0.361 5.361 22 C -0.370 4.370 23 H 0.088 0.912 24 C -0.206 4.206 25 N -0.580 5.580 26 Si 0.735 3.265 27 H -0.206 1.206 28 H -0.219 1.219 29 H -0.220 1.220 30 H 0.090 0.910 31 H 0.063 0.937 32 H 0.073 0.927 33 H 0.099 0.901 34 H 0.105 0.895 35 H 0.169 0.831 36 H 0.165 0.835 37 H 0.152 0.848 38 H 0.195 0.805 39 H 0.110 0.890 40 H 0.091 0.909 41 H 0.095 0.905 42 H 0.067 0.933 43 H 0.219 0.781 44 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 13.939 9.246 6.560 17.967 hybrid contribution -0.383 0.075 -0.388 0.550 sum 13.555 9.320 6.172 17.570 Atomic orbital electron populations 1.21668 0.94042 1.03274 1.00545 1.21712 0.96654 0.98875 0.95585 0.91550 1.21749 0.77624 1.01954 0.98974 1.48061 1.07439 1.58906 1.17628 1.17979 0.85441 0.79161 0.82946 1.90779 1.74582 1.42354 1.34166 1.21196 0.95380 0.96992 1.02160 1.21676 0.91851 0.98948 0.92617 1.21851 0.96643 0.97733 0.99644 1.21658 0.95596 0.91953 0.98546 1.20117 0.84472 0.93470 0.74970 1.93037 1.84034 1.68428 1.71846 1.93035 1.86590 1.97311 1.40452 1.67300 1.03632 1.31256 1.14449 1.23281 0.90722 0.95790 0.92326 1.22128 0.96663 0.99375 0.83852 1.22532 1.00608 0.98645 0.97274 1.20217 0.90637 0.87435 0.94927 0.92964 1.42482 1.78993 1.07669 1.06973 1.19254 1.37415 0.93765 0.86551 0.91187 1.24698 1.02172 0.97149 0.96620 1.69648 1.51745 1.12933 1.23627 0.86174 0.77304 0.79997 0.83018 1.20632 1.21926 1.21964 0.90960 0.93695 0.92726 0.90138 0.89507 0.83108 0.83505 0.84822 0.80494 0.89017 0.90869 0.90480 0.93275 0.78114 0.93528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.08 9.05 37.16 0.34 -1.74 16 2 C -0.11 -1.66 2.67 -90.49 -0.24 -1.90 16 3 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 4 C 0.12 1.86 5.43 -3.71 -0.02 1.84 16 5 N -0.59 -8.79 2.97 -173.88 -0.52 -9.31 16 6 C 0.56 8.38 7.36 -12.33 -0.09 8.29 16 7 O -0.54 -9.53 16.36 5.32 0.09 -9.44 16 8 C -0.15 -1.92 5.18 -104.82 -0.54 -2.46 16 9 C -0.02 -0.26 9.80 -38.87 -0.38 -0.64 16 10 C -0.14 -1.34 9.60 -39.50 -0.38 -1.72 16 11 C 0.06 0.64 6.28 -82.51 -0.52 0.12 16 12 C 0.32 2.84 5.54 36.01 0.20 3.04 16 13 F -0.19 -1.85 17.25 2.25 0.04 -1.81 16 14 F -0.19 -1.85 17.25 2.25 0.04 -1.81 16 15 N -0.46 -5.45 10.23 -9.14 -0.09 -5.54 16 16 C 0.14 1.67 8.55 -17.14 -0.15 1.52 16 17 C 0.10 1.49 4.63 -3.71 -0.02 1.47 16 18 C -0.15 -2.32 5.78 -26.61 -0.15 -2.47 16 19 C 0.18 3.12 2.53 -67.89 -0.17 2.95 16 20 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16 21 N -0.72 -15.63 3.64 -53.39 -0.19 -15.82 16 22 C -0.24 -5.98 9.93 -15.06 -0.15 -6.13 16 23 H 0.07 1.73 7.83 -52.48 -0.41 1.32 16 24 C -0.01 -0.27 5.50 -17.43 -0.10 -0.37 16 25 N -0.93 -26.14 13.06 55.49 0.72 -25.41 16 26 Si 0.90 21.22 29.55 -169.99 -5.02 16.20 16 27 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 28 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 29 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 30 H 0.07 1.27 7.54 -51.93 -0.39 0.88 16 31 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.08 1.39 6.64 -51.93 -0.34 1.04 16 34 H 0.09 1.36 7.00 -51.93 -0.36 1.00 16 35 H 0.15 1.42 8.06 -52.49 -0.42 1.00 16 36 H 0.15 1.08 8.06 -52.49 -0.42 0.66 16 37 H 0.13 0.89 8.10 -51.93 -0.42 0.47 16 38 H 0.18 2.07 6.47 -52.49 -0.34 1.73 16 39 H 0.09 1.54 7.71 -51.93 -0.40 1.14 16 40 H 0.07 0.94 4.64 -51.93 -0.24 0.70 16 41 H 0.08 1.27 8.14 -51.93 -0.42 0.84 16 42 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.38 8.93 5.93 -40.82 -0.24 8.69 16 44 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 LS Contribution 364.51 15.07 5.49 5.49 Total: -1.00 -29.33 364.51 -7.49 -36.81 By element: Atomic # 1 Polarization: 14.53 SS G_CDS: -5.67 Total: 8.86 kcal Atomic # 6 Polarization: 4.15 SS G_CDS: -2.37 Total: 1.78 kcal Atomic # 7 Polarization: -56.01 SS G_CDS: -0.08 Total: -56.09 kcal Atomic # 8 Polarization: -9.53 SS G_CDS: 0.09 Total: -9.44 kcal Atomic # 9 Polarization: -3.70 SS G_CDS: 0.08 Total: -3.62 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -29.33 -7.49 -36.81 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036066591.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.977 kcal (2) G-P(sol) polarization free energy of solvation -29.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds