Wall clock time and date at job start Wed Apr 1 2020 00:36:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08999 * 109.51999 * 2 1 4 4 C 1.53193 * 109.49518 * 120.08016 * 2 1 3 5 5 N 1.46922 * 108.77398 * 174.58753 * 4 2 1 6 6 C 1.34769 * 120.63251 * 126.37079 * 5 4 2 7 7 O 1.21556 * 120.00084 * 354.91704 * 6 5 4 8 8 C 1.47842 * 120.00255 * 174.91706 * 6 5 4 9 9 C 1.40031 * 120.55871 * 140.23081 * 8 6 5 10 10 C 1.38355 * 118.28555 * 179.73212 * 9 8 6 11 11 C 1.38355 * 119.30497 * 0.54771 * 10 9 8 12 12 C 1.50699 * 119.45998 * 179.74202 * 11 10 9 13 13 F 1.39897 * 109.47247 * 299.96844 * 12 11 10 14 14 F 1.39901 * 109.47408 * 59.97593 * 12 11 10 15 15 N 1.31926 * 121.07584 * 359.70961 * 11 10 9 16 16 C 1.31693 * 121.88143 * 0.02562 * 15 11 10 17 17 C 1.46926 * 118.73922 * 306.39222 * 5 4 2 18 18 C 1.53195 * 108.77662 * 53.60955 * 17 5 4 19 19 C 1.53038 * 109.31316 * 305.36489 * 18 17 5 20 20 H 1.08992 * 109.46259 * 181.37029 * 19 18 17 21 21 N 1.46498 * 109.45905 * 301.34831 * 19 18 17 22 22 C 1.36940 * 119.99943 * 274.99719 * 21 19 18 23 23 H 1.08006 * 119.99337 * 359.97438 * 22 21 19 24 24 C 1.38812 * 120.00343 * 179.72938 * 22 21 19 25 25 N 1.31615 * 119.99828 * 0.26601 * 24 22 21 26 26 Si 1.86794 * 119.99937 * 180.27526 * 24 22 21 27 27 H 1.48503 * 109.47244 * 359.97438 * 26 24 22 28 28 H 1.48504 * 109.47194 * 119.99411 * 26 24 22 29 29 H 1.48500 * 109.47174 * 239.99480 * 26 24 22 30 30 H 1.08997 * 109.46771 * 180.02562 * 1 2 3 31 31 H 1.08993 * 109.47151 * 300.08510 * 1 2 3 32 32 H 1.09006 * 109.46691 * 60.08230 * 1 2 3 33 33 H 1.09001 * 109.58615 * 54.80323 * 4 2 1 34 34 H 1.08999 * 109.58756 * 294.37702 * 4 2 1 35 35 H 1.08002 * 120.85321 * 359.97438 * 9 8 6 36 36 H 1.07998 * 120.34651 * 180.27625 * 10 9 8 37 37 H 1.09007 * 109.47000 * 179.97438 * 12 11 10 38 38 H 1.08001 * 119.71537 * 180.02562 * 16 15 11 39 39 H 1.08997 * 109.58849 * 293.82150 * 17 5 4 40 40 H 1.09005 * 109.70433 * 173.46778 * 17 5 4 41 41 H 1.08997 * 109.49831 * 185.41395 * 18 17 5 42 42 H 1.08997 * 109.49781 * 65.31499 * 18 17 5 43 43 H 0.96995 * 120.00535 * 94.99599 * 21 19 18 44 44 H 0.96999 * 119.99951 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0413 -0.7238 1.2496 5 7 3.5046 -0.8291 1.1696 6 6 4.2811 -0.3856 2.1779 7 8 3.7793 0.1902 3.1235 8 6 5.7433 -0.5995 2.1340 9 6 6.6225 0.4015 2.5653 10 6 7.9817 0.1492 2.5089 11 6 8.4249 -1.0677 2.0222 12 6 9.9048 -1.3440 1.9537 13 9 10.5180 -0.3979 1.1255 14 9 10.4538 -1.2652 3.2381 15 7 7.5731 -1.9904 1.6176 16 6 6.2707 -1.7996 1.6565 17 6 4.1053 -1.4267 -0.0307 18 6 3.5709 -0.6950 -1.2660 19 6 2.0409 -0.7230 -1.2484 20 1 1.6583 -0.2242 -2.1388 21 7 1.5785 -2.1130 -1.2308 22 6 1.4470 -2.8057 -2.4047 23 1 1.6838 -2.3271 -3.3435 24 6 1.0142 -4.1246 -2.3877 25 7 0.7251 -4.7076 -1.2436 26 14 0.8422 -5.0718 -3.9884 27 1 1.2257 -4.1966 -5.1252 28 1 1.7305 -6.2615 -3.9575 29 1 -0.5668 -5.5103 -4.1552 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5151 0.8892 32 1 -0.3633 0.5126 -0.8908 33 1 1.6053 -1.7216 1.2980 34 1 1.7637 -0.1580 2.1389 35 1 6.2490 1.3446 2.9362 36 1 8.6893 0.8960 2.8373 37 1 10.0696 -2.3425 1.5488 38 1 5.6050 -2.5792 1.3167 39 1 3.8376 -2.4818 -0.0867 40 1 5.1899 -1.3267 0.0125 41 1 3.9335 -1.1896 -2.1670 42 1 3.9160 0.3389 -1.2540 43 1 1.3654 -2.5427 -0.3877 44 1 0.4230 -5.6292 -1.2317 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036066591.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:36:52 Heat of formation + Delta-G solvation = -96.405441 kcal Electronic energy + Delta-G solvation = -29849.019922 eV Core-core repulsion = 25436.842168 eV Total energy + Delta-G solvation = -4412.177755 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -50.11117 -48.09806 -42.15329 -40.72817 -39.10740 -36.01176 -34.74523 -33.94782 -33.26256 -32.90673 -30.95348 -28.86593 -27.35507 -26.48850 -25.51418 -24.88679 -23.82826 -23.08190 -21.40086 -19.92217 -19.30957 -19.02467 -18.83277 -18.35764 -18.24274 -17.55772 -17.06554 -16.54147 -16.19836 -16.01429 -15.92981 -15.59021 -15.38793 -15.18782 -14.91086 -14.76820 -14.53624 -14.46516 -14.38350 -14.29632 -14.20402 -13.66810 -13.47733 -13.00338 -12.96553 -12.88216 -12.68089 -12.45298 -12.37656 -12.05033 -11.99784 -11.94101 -11.58498 -11.43582 -11.21214 -11.15124 -10.88778 -10.76382 -10.40533 -9.70635 -8.91110 -7.87511 -5.13318 -0.72048 -0.06290 1.44228 1.49965 1.52369 1.59873 1.78526 2.15380 2.37604 2.61055 3.09515 3.19159 3.27782 3.46787 3.54825 3.62993 3.81659 3.83225 3.87847 3.93069 3.99832 4.07921 4.10469 4.27829 4.35442 4.40808 4.48555 4.59906 4.65766 4.70572 4.79378 4.83708 4.93528 5.01531 5.14007 5.17477 5.20794 5.26286 5.29101 5.47119 5.58807 5.63218 6.25713 6.34661 6.42658 6.89028 7.42836 8.18096 8.41914 9.35630 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.013096 B = 0.003071 C = 0.002663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2137.514699 B = 9115.875448 C =10512.854255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.098 4.098 3 H 0.086 0.914 4 C 0.123 3.877 5 N -0.589 5.589 6 C 0.562 3.438 7 O -0.568 6.568 8 C -0.166 4.166 9 C -0.020 4.020 10 C -0.132 4.132 11 C 0.056 3.944 12 C 0.328 3.672 13 F -0.196 7.196 14 F -0.196 7.196 15 N -0.468 5.468 16 C 0.132 3.868 17 C 0.112 3.888 18 C -0.143 4.143 19 C 0.173 3.827 20 H 0.048 0.952 21 N -0.724 5.724 22 C -0.225 4.225 23 H 0.074 0.926 24 C -0.070 4.070 25 N -0.966 5.966 26 Si 0.959 3.041 27 H -0.268 1.268 28 H -0.299 1.299 29 H -0.301 1.301 30 H 0.041 0.959 31 H 0.065 0.935 32 H 0.059 0.941 33 H 0.058 0.942 34 H 0.089 0.911 35 H 0.165 0.835 36 H 0.174 0.826 37 H 0.157 0.843 38 H 0.175 0.825 39 H 0.066 0.934 40 H 0.096 0.904 41 H 0.068 0.932 42 H 0.073 0.927 43 H 0.375 0.625 44 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.747 11.565 6.314 20.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.118 4.118 3 H 0.105 0.895 4 C 0.001 3.999 5 N -0.319 5.319 6 C 0.350 3.650 7 O -0.449 6.449 8 C -0.171 4.171 9 C -0.046 4.046 10 C -0.152 4.152 11 C -0.082 4.082 12 C 0.274 3.726 13 F -0.177 7.177 14 F -0.178 7.178 15 N -0.177 5.177 16 C -0.026 4.026 17 C -0.010 4.010 18 C -0.183 4.183 19 C 0.064 3.936 20 H 0.066 0.934 21 N -0.365 5.365 22 C -0.357 4.357 23 H 0.092 0.908 24 C -0.262 4.262 25 N -0.618 5.618 26 Si 0.791 3.209 27 H -0.193 1.193 28 H -0.226 1.226 29 H -0.229 1.229 30 H 0.060 0.940 31 H 0.084 0.916 32 H 0.078 0.922 33 H 0.077 0.923 34 H 0.107 0.893 35 H 0.183 0.817 36 H 0.191 0.809 37 H 0.174 0.826 38 H 0.192 0.808 39 H 0.084 0.916 40 H 0.114 0.886 41 H 0.087 0.913 42 H 0.091 0.909 43 H 0.208 0.792 44 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 15.832 11.065 6.287 20.312 hybrid contribution -0.894 -0.372 -0.269 1.005 sum 14.938 10.693 6.018 19.331 Atomic orbital electron populations 1.21604 0.93912 1.01612 1.01848 1.21632 0.96701 0.99352 0.94112 0.89542 1.21611 0.78257 1.00778 0.99259 1.48045 1.07126 1.58864 1.17865 1.18272 0.86363 0.78227 0.82113 1.90759 1.75379 1.43742 1.35015 1.21024 0.93981 0.98026 1.04087 1.21886 0.92057 0.98968 0.91688 1.22149 0.96606 0.97922 0.98514 1.22056 0.96401 0.92004 0.97772 1.20241 0.83263 0.94304 0.74778 1.93032 1.83968 1.68751 1.71930 1.93031 1.86522 1.97361 1.40854 1.67314 1.03490 1.31902 1.15003 1.23219 0.91025 0.95667 0.92679 1.22000 0.97899 0.97685 0.83446 1.22413 0.98629 1.00088 0.97219 1.20426 0.92012 0.85263 0.95892 0.93391 1.42580 1.79074 1.09213 1.05633 1.19573 1.34726 0.93692 0.87682 0.90773 1.25323 1.03635 0.98381 0.98884 1.69788 1.53978 1.12706 1.25288 0.85269 0.76330 0.78691 0.80636 1.19252 1.22629 1.22934 0.94017 0.91582 0.92242 0.92348 0.89286 0.81718 0.80873 0.82612 0.80825 0.91619 0.88630 0.91316 0.90864 0.79164 0.94404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.90 9.05 71.98 0.65 -3.25 16 2 C -0.10 -2.90 2.67 -10.71 -0.03 -2.93 16 3 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 4 C 0.12 3.84 5.43 86.36 0.47 4.30 16 5 N -0.59 -17.21 2.97 -822.32 -2.44 -19.65 16 6 C 0.56 16.34 7.36 86.79 0.64 16.98 16 7 O -0.57 -19.57 16.36 -3.89 -0.06 -19.64 16 8 C -0.17 -3.95 5.18 -19.99 -0.10 -4.05 16 9 C -0.02 -0.38 9.80 22.73 0.22 -0.15 16 10 C -0.13 -2.18 9.60 22.33 0.21 -1.97 16 11 C 0.06 1.05 6.28 42.57 0.27 1.32 16 12 C 0.33 4.90 5.54 71.24 0.39 5.29 16 13 F -0.20 -3.25 17.25 44.97 0.78 -2.47 16 14 F -0.20 -3.29 17.25 44.97 0.78 -2.51 16 15 N -0.47 -10.36 10.23 -182.83 -1.87 -12.23 16 16 C 0.13 3.08 8.55 85.02 0.73 3.80 16 17 C 0.11 3.19 4.63 86.36 0.40 3.59 16 18 C -0.14 -4.22 5.78 30.67 0.18 -4.04 16 19 C 0.17 5.91 2.53 45.02 0.11 6.03 16 20 H 0.05 1.70 8.08 -2.39 -0.02 1.68 16 21 N -0.72 -31.82 3.64 -322.82 -1.17 -32.99 16 22 C -0.22 -11.29 9.93 84.03 0.83 -10.45 16 23 H 0.07 3.62 7.83 -2.91 -0.02 3.59 16 24 C -0.07 -3.75 5.50 84.86 0.47 -3.28 16 25 N -0.97 -55.78 13.06 21.65 0.28 -55.50 16 26 Si 0.96 44.17 29.55 68.60 2.03 46.19 16 27 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 28 H -0.30 -13.93 7.11 99.48 0.71 -13.23 16 29 H -0.30 -14.20 7.11 99.48 0.71 -13.49 16 30 H 0.04 1.49 7.54 -2.39 -0.02 1.47 16 31 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 32 H 0.06 1.68 8.14 -2.38 -0.02 1.66 16 33 H 0.06 2.09 6.64 -2.39 -0.02 2.07 16 34 H 0.09 2.75 7.00 -2.39 -0.02 2.73 16 35 H 0.17 2.66 8.06 -2.91 -0.02 2.63 16 36 H 0.17 1.91 8.06 -2.91 -0.02 1.89 16 37 H 0.16 1.66 8.10 -2.38 -0.02 1.64 16 38 H 0.17 4.05 6.47 -2.91 -0.02 4.03 16 39 H 0.07 2.25 7.71 -2.39 -0.02 2.24 16 40 H 0.10 2.33 4.64 -2.38 -0.01 2.31 16 41 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 42 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 43 H 0.37 17.98 5.93 -92.71 -0.55 17.43 16 44 H 0.25 14.08 8.31 -92.71 -0.77 13.31 16 Total: -1.00 -62.90 364.51 4.25 -58.65 By element: Atomic # 1 Polarization: 28.46 SS G_CDS: 0.50 Total: 28.95 kcal Atomic # 6 Polarization: 5.74 SS G_CDS: 5.44 Total: 11.19 kcal Atomic # 7 Polarization: -115.16 SS G_CDS: -5.21 Total: -120.37 kcal Atomic # 8 Polarization: -19.57 SS G_CDS: -0.06 Total: -19.64 kcal Atomic # 9 Polarization: -6.53 SS G_CDS: 1.55 Total: -4.98 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 2.03 Total: 46.19 kcal Total: -62.90 4.25 -58.65 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036066591.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.753 kcal (2) G-P(sol) polarization free energy of solvation -62.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds