Wall clock time and date at job start Wed Apr 1 2020 00:36:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09004 * 109.50363 * 2 1 4 4 C 1.53628 * 109.45906 * 120.20678 * 2 1 3 5 5 N 1.46918 * 108.54428 * 174.73706 * 4 2 1 6 6 C 1.34785 * 120.62906 * 126.37308 * 5 4 2 7 7 O 1.21555 * 119.99611 * 3.50889 * 6 5 4 8 8 C 1.47836 * 119.99932 * 183.51415 * 6 5 4 9 9 C 1.40024 * 120.55934 * 309.65294 * 8 6 5 10 10 C 1.38355 * 118.29009 * 179.97438 * 9 8 6 11 11 C 1.38359 * 119.30270 * 0.27930 * 10 9 8 12 12 C 1.50700 * 119.46025 * 179.70021 * 11 10 9 13 13 F 1.39895 * 109.46834 * 209.99680 * 12 11 10 14 14 F 1.39899 * 109.47159 * 329.99999 * 12 11 10 15 15 N 1.31930 * 121.07531 * 359.44334 * 11 10 9 16 16 C 1.31689 * 121.87930 * 0.54732 * 15 11 10 17 17 C 1.46928 * 118.74440 * 306.09297 * 5 4 2 18 18 C 1.53191 * 108.77104 * 53.85951 * 17 5 4 19 19 C 1.53041 * 109.31519 * 305.36893 * 18 17 5 20 20 H 1.08996 * 109.45665 * 301.34199 * 19 18 17 21 21 N 1.46497 * 109.46087 * 181.38711 * 19 18 17 22 22 C 1.36941 * 120.00482 * 84.99661 * 21 19 18 23 23 H 1.08001 * 119.99571 * 0.02562 * 22 21 19 24 24 C 1.38809 * 120.00050 * 179.97438 * 22 21 19 25 25 N 1.31619 * 120.00208 * 359.97438 * 24 22 21 26 26 Si 1.86802 * 119.99561 * 180.02562 * 24 22 21 27 27 H 1.48496 * 109.47266 * 90.00262 * 26 24 22 28 28 H 1.48506 * 109.46676 * 210.00295 * 26 24 22 29 29 H 1.48502 * 109.47335 * 329.99549 * 26 24 22 30 30 H 1.09000 * 109.47330 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.47139 * 300.06427 * 1 2 3 32 32 H 1.09004 * 109.46715 * 60.06342 * 1 2 3 33 33 H 1.09010 * 109.73706 * 54.99962 * 4 2 1 34 34 H 1.08996 * 109.66398 * 294.43833 * 4 2 1 35 35 H 1.08005 * 120.85485 * 359.97438 * 9 8 6 36 36 H 1.08002 * 120.35337 * 180.02562 * 10 9 8 37 37 H 1.09004 * 109.46827 * 89.99850 * 12 11 10 38 38 H 1.08010 * 119.71441 * 179.72504 * 16 15 11 39 39 H 1.08994 * 109.58588 * 173.64549 * 17 5 4 40 40 H 1.08998 * 109.58801 * 293.93403 * 17 5 4 41 41 H 1.09009 * 109.49635 * 65.31531 * 18 17 5 42 42 H 1.09000 * 109.50142 * 185.41483 * 18 17 5 43 43 H 0.97004 * 120.00026 * 264.99645 * 21 19 18 44 44 H 0.96995 * 119.99795 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0417 -0.7288 1.2518 5 7 3.5052 -0.8284 1.1690 6 6 4.2818 -0.3855 2.1776 7 8 3.7717 0.0432 3.1943 8 6 5.7540 -0.4209 2.0474 9 6 6.4052 -1.5939 1.6463 10 6 7.7845 -1.5744 1.5393 11 6 8.4702 -0.4096 1.8349 12 6 9.9731 -0.3863 1.7262 13 9 10.4933 0.5269 2.6494 14 9 10.4799 -1.6621 1.9958 15 7 7.8294 0.6825 2.2056 16 6 6.5180 0.7139 2.3215 17 6 4.1059 -1.4257 -0.0315 18 6 3.5708 -0.6941 -1.2665 19 6 2.0408 -0.7228 -1.2485 20 1 1.6972 -1.7571 -1.2355 21 7 1.5259 -0.0529 -2.4453 22 6 1.3945 -0.7494 -3.6169 23 1 1.6701 -1.7928 -3.6586 24 6 0.9062 -0.1147 -4.7507 25 7 0.5689 1.1566 -4.6995 26 14 0.7263 -1.0652 -6.3487 27 1 -0.6256 -1.6763 -6.4117 28 1 0.9057 -0.1409 -7.4972 29 1 1.7559 -2.1336 -6.4078 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5149 0.8894 32 1 -0.3633 0.5129 -0.8906 33 1 1.6095 -1.7284 1.2984 34 1 1.7635 -0.1664 2.1431 35 1 5.8451 -2.4907 1.4260 36 1 8.3206 -2.4602 1.2323 37 1 10.2598 -0.0871 0.7180 38 1 6.0296 1.6259 2.6320 39 1 5.1901 -1.3230 0.0128 40 1 3.8407 -2.4815 -0.0862 41 1 3.9154 0.3400 -1.2546 42 1 3.9333 -1.1885 -2.1678 43 1 1.2781 0.8842 -2.4078 44 1 0.2280 1.6001 -5.4919 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036066595.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:36:56 Heat of formation + Delta-G solvation = -83.015009 kcal Electronic energy + Delta-G solvation = -29386.094629 eV Core-core repulsion = 24974.497527 eV Total energy + Delta-G solvation = -4411.597102 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.39368 -47.39389 -41.18739 -39.68403 -37.75012 -34.88810 -33.60568 -32.63735 -32.44422 -31.57324 -29.45305 -27.87123 -26.42383 -25.15269 -24.11499 -23.50386 -22.54309 -21.77885 -20.39092 -19.41454 -18.25144 -17.94805 -17.88212 -17.43679 -17.15010 -16.54965 -16.23916 -15.28465 -15.12552 -14.96929 -14.65522 -14.28580 -14.22280 -14.10508 -13.90208 -13.76119 -13.67460 -13.42004 -13.40256 -13.07869 -12.85973 -12.53124 -12.35465 -11.89543 -11.73728 -11.69905 -11.28404 -11.01412 -10.90372 -10.76922 -10.53273 -10.44726 -10.27682 -10.24906 -9.90562 -9.82362 -9.70832 -9.59257 -8.97982 -8.67044 -7.04557 -5.84641 -3.13871 0.15396 0.69170 2.37908 2.77262 2.92478 3.22153 3.37021 3.42218 3.44280 3.65651 3.83136 4.13316 4.28816 4.37275 4.46703 4.50712 4.67816 4.72596 4.90149 5.12054 5.13334 5.16153 5.22364 5.37084 5.41645 5.45197 5.51659 5.59118 5.66418 5.83278 5.95094 5.98178 6.03689 6.19505 6.25314 6.34094 6.39710 6.50620 6.70210 6.83066 6.94494 7.21593 7.30661 7.61182 7.92562 8.33369 9.44949 10.01630 10.36284 11.37705 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.013767 B = 0.002686 C = 0.002386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2033.312808 B =10420.639310 C =11733.767900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.110 4.110 3 H 0.070 0.930 4 C 0.120 3.880 5 N -0.595 5.595 6 C 0.561 3.439 7 O -0.534 6.534 8 C -0.153 4.153 9 C -0.043 4.043 10 C -0.144 4.144 11 C 0.062 3.938 12 C 0.327 3.673 13 F -0.185 7.185 14 F -0.194 7.194 15 N -0.454 5.454 16 C 0.154 3.846 17 C 0.097 3.903 18 C -0.152 4.152 19 C 0.184 3.816 20 H 0.049 0.951 21 N -0.720 5.720 22 C -0.240 4.240 23 H 0.070 0.930 24 C -0.011 4.011 25 N -0.931 5.931 26 Si 0.905 3.095 27 H -0.290 1.290 28 H -0.292 1.292 29 H -0.282 1.282 30 H 0.051 0.949 31 H 0.044 0.956 32 H 0.074 0.926 33 H 0.070 0.930 34 H 0.091 0.909 35 H 0.151 0.849 36 H 0.152 0.848 37 H 0.133 0.867 38 H 0.173 0.827 39 H 0.080 0.920 40 H 0.072 0.928 41 H 0.060 0.940 42 H 0.077 0.923 43 H 0.384 0.616 44 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.470 -6.083 13.203 20.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.130 4.130 3 H 0.089 0.911 4 C -0.002 4.002 5 N -0.326 5.326 6 C 0.347 3.653 7 O -0.411 6.411 8 C -0.158 4.158 9 C -0.069 4.069 10 C -0.164 4.164 11 C -0.077 4.077 12 C 0.273 3.727 13 F -0.166 7.166 14 F -0.175 7.175 15 N -0.162 5.162 16 C -0.004 4.004 17 C -0.026 4.026 18 C -0.193 4.193 19 C 0.073 3.927 20 H 0.067 0.933 21 N -0.360 5.360 22 C -0.371 4.371 23 H 0.088 0.912 24 C -0.208 4.208 25 N -0.579 5.579 26 Si 0.736 3.264 27 H -0.217 1.217 28 H -0.218 1.218 29 H -0.208 1.208 30 H 0.070 0.930 31 H 0.063 0.937 32 H 0.093 0.907 33 H 0.089 0.911 34 H 0.109 0.891 35 H 0.169 0.831 36 H 0.170 0.830 37 H 0.150 0.850 38 H 0.190 0.810 39 H 0.098 0.902 40 H 0.090 0.910 41 H 0.079 0.921 42 H 0.096 0.904 43 H 0.218 0.782 44 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 14.672 -5.228 13.779 20.796 hybrid contribution -0.561 -0.988 -1.207 1.658 sum 14.111 -6.217 12.573 19.896 Atomic orbital electron populations 1.21661 0.93927 1.01849 1.01982 1.21834 0.96731 1.00031 0.94406 0.91124 1.21893 0.77512 1.01188 0.99626 1.48112 1.07425 1.59394 1.17694 1.18022 0.85647 0.78134 0.83454 1.90809 1.74564 1.46968 1.28797 1.21147 0.95391 0.96522 1.02789 1.21826 0.94203 0.97893 0.93019 1.21800 0.94707 0.99060 1.00794 1.21839 0.96106 0.91106 0.98677 1.20096 0.86153 0.73180 0.93293 1.93045 1.87622 1.66497 1.69457 1.93022 1.88082 1.40862 1.95529 1.67360 1.10192 1.27211 1.11465 1.22882 0.87809 0.97569 0.92167 1.22187 0.98006 0.97566 0.84878 1.22705 1.00556 1.00420 0.95621 1.20190 0.90205 0.95760 0.86496 0.93348 1.42404 1.76428 1.11423 1.05770 1.19196 1.36170 0.94067 0.87716 0.91243 1.24735 1.01936 0.96006 0.98086 1.69654 1.49760 1.09488 1.28997 0.86227 0.77809 0.78684 0.83656 1.21722 1.21809 1.20799 0.92992 0.93723 0.90656 0.91137 0.89099 0.83101 0.83021 0.84978 0.81032 0.90228 0.90965 0.92134 0.90421 0.78181 0.93453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.08 9.03 37.15 0.34 -1.74 16 2 C -0.11 -1.68 2.47 -90.28 -0.22 -1.90 16 3 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 4 C 0.12 1.58 5.74 -3.49 -0.02 1.56 16 5 N -0.59 -7.52 2.97 -173.62 -0.51 -8.04 16 6 C 0.56 7.49 7.27 -12.33 -0.09 7.40 16 7 O -0.53 -8.75 16.48 5.32 0.09 -8.66 16 8 C -0.15 -1.71 5.02 -104.82 -0.53 -2.23 16 9 C -0.04 -0.37 7.50 -38.87 -0.29 -0.66 16 10 C -0.14 -1.13 9.42 -39.49 -0.37 -1.50 16 11 C 0.06 0.58 6.58 -82.51 -0.54 0.04 16 12 C 0.33 2.53 5.72 36.01 0.21 2.74 16 13 F -0.19 -1.92 17.05 2.25 0.04 -1.88 16 14 F -0.19 -1.57 16.45 2.25 0.04 -1.53 16 15 N -0.45 -5.20 9.94 -9.13 -0.09 -5.29 16 16 C 0.15 1.75 10.91 -17.14 -0.19 1.56 16 17 C 0.10 1.10 5.41 -3.71 -0.02 1.08 16 18 C -0.15 -2.32 5.66 -26.61 -0.15 -2.47 16 19 C 0.18 3.23 2.19 -67.89 -0.15 3.08 16 20 H 0.05 0.87 8.08 -51.93 -0.42 0.45 16 21 N -0.72 -16.49 4.41 -53.39 -0.24 -16.72 16 22 C -0.24 -6.20 9.93 -15.06 -0.15 -6.35 16 23 H 0.07 1.74 7.83 -52.49 -0.41 1.32 16 24 C -0.01 -0.31 5.50 -17.43 -0.10 -0.41 16 25 N -0.93 -26.98 13.06 55.49 0.72 -26.25 16 26 Si 0.91 21.44 29.55 -169.99 -5.02 16.42 16 27 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 28 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 29 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 30 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.07 1.37 7.36 -51.93 -0.38 0.99 16 33 H 0.07 0.85 8.14 -51.92 -0.42 0.42 16 34 H 0.09 1.25 7.02 -51.93 -0.36 0.88 16 35 H 0.15 0.99 7.11 -52.48 -0.37 0.62 16 36 H 0.15 0.80 7.59 -52.49 -0.40 0.40 16 37 H 0.13 0.58 8.14 -51.93 -0.42 0.15 16 38 H 0.17 1.79 8.06 -52.48 -0.42 1.37 16 39 H 0.08 0.78 4.53 -51.93 -0.24 0.54 16 40 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.06 1.01 8.14 -51.92 -0.42 0.58 16 42 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 43 H 0.38 9.58 7.50 -40.82 -0.31 9.28 16 44 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 LS Contribution 368.08 15.07 5.55 5.55 Total: -1.00 -31.58 368.08 -7.54 -39.12 By element: Atomic # 1 Polarization: 12.94 SS G_CDS: -5.83 Total: 7.11 kcal Atomic # 6 Polarization: 2.47 SS G_CDS: -2.28 Total: 0.19 kcal Atomic # 7 Polarization: -56.18 SS G_CDS: -0.12 Total: -56.30 kcal Atomic # 8 Polarization: -8.75 SS G_CDS: 0.09 Total: -8.66 kcal Atomic # 9 Polarization: -3.49 SS G_CDS: 0.08 Total: -3.41 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -31.58 -7.54 -39.12 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036066595.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.899 kcal (2) G-P(sol) polarization free energy of solvation -31.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds