Wall clock time and date at job start Wed Apr 1 2020 00:36:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09004 * 109.50363 * 2 1 4 4 C 1.53628 * 109.45906 * 120.20678 * 2 1 3 5 5 N 1.46918 * 108.54428 * 174.73706 * 4 2 1 6 6 C 1.34785 * 120.62906 * 126.37308 * 5 4 2 7 7 O 1.21555 * 119.99611 * 3.50889 * 6 5 4 8 8 C 1.47836 * 119.99932 * 183.51415 * 6 5 4 9 9 C 1.40024 * 120.55934 * 309.65294 * 8 6 5 10 10 C 1.38355 * 118.29009 * 179.97438 * 9 8 6 11 11 C 1.38359 * 119.30270 * 0.27930 * 10 9 8 12 12 C 1.50700 * 119.46025 * 179.70021 * 11 10 9 13 13 F 1.39895 * 109.46834 * 209.99680 * 12 11 10 14 14 F 1.39899 * 109.47159 * 329.99999 * 12 11 10 15 15 N 1.31930 * 121.07531 * 359.44334 * 11 10 9 16 16 C 1.31689 * 121.87930 * 0.54732 * 15 11 10 17 17 C 1.46928 * 118.74440 * 306.09297 * 5 4 2 18 18 C 1.53191 * 108.77104 * 53.85951 * 17 5 4 19 19 C 1.53041 * 109.31519 * 305.36893 * 18 17 5 20 20 H 1.08996 * 109.45665 * 301.34199 * 19 18 17 21 21 N 1.46497 * 109.46087 * 181.38711 * 19 18 17 22 22 C 1.36941 * 120.00482 * 84.99661 * 21 19 18 23 23 H 1.08001 * 119.99571 * 0.02562 * 22 21 19 24 24 C 1.38809 * 120.00050 * 179.97438 * 22 21 19 25 25 N 1.31619 * 120.00208 * 359.97438 * 24 22 21 26 26 Si 1.86802 * 119.99561 * 180.02562 * 24 22 21 27 27 H 1.48496 * 109.47266 * 90.00262 * 26 24 22 28 28 H 1.48506 * 109.46676 * 210.00295 * 26 24 22 29 29 H 1.48502 * 109.47335 * 329.99549 * 26 24 22 30 30 H 1.09000 * 109.47330 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.47139 * 300.06427 * 1 2 3 32 32 H 1.09004 * 109.46715 * 60.06342 * 1 2 3 33 33 H 1.09010 * 109.73706 * 54.99962 * 4 2 1 34 34 H 1.08996 * 109.66398 * 294.43833 * 4 2 1 35 35 H 1.08005 * 120.85485 * 359.97438 * 9 8 6 36 36 H 1.08002 * 120.35337 * 180.02562 * 10 9 8 37 37 H 1.09004 * 109.46827 * 89.99850 * 12 11 10 38 38 H 1.08010 * 119.71441 * 179.72504 * 16 15 11 39 39 H 1.08994 * 109.58588 * 173.64549 * 17 5 4 40 40 H 1.08998 * 109.58801 * 293.93403 * 17 5 4 41 41 H 1.09009 * 109.49635 * 65.31531 * 18 17 5 42 42 H 1.09000 * 109.50142 * 185.41483 * 18 17 5 43 43 H 0.97004 * 120.00026 * 264.99645 * 21 19 18 44 44 H 0.96995 * 119.99795 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0417 -0.7288 1.2518 5 7 3.5052 -0.8284 1.1690 6 6 4.2818 -0.3855 2.1776 7 8 3.7717 0.0432 3.1943 8 6 5.7540 -0.4209 2.0474 9 6 6.4052 -1.5939 1.6463 10 6 7.7845 -1.5744 1.5393 11 6 8.4702 -0.4096 1.8349 12 6 9.9731 -0.3863 1.7262 13 9 10.4933 0.5269 2.6494 14 9 10.4799 -1.6621 1.9958 15 7 7.8294 0.6825 2.2056 16 6 6.5180 0.7139 2.3215 17 6 4.1059 -1.4257 -0.0315 18 6 3.5708 -0.6941 -1.2665 19 6 2.0408 -0.7228 -1.2485 20 1 1.6972 -1.7571 -1.2355 21 7 1.5259 -0.0529 -2.4453 22 6 1.3945 -0.7494 -3.6169 23 1 1.6701 -1.7928 -3.6586 24 6 0.9062 -0.1147 -4.7507 25 7 0.5689 1.1566 -4.6995 26 14 0.7263 -1.0652 -6.3487 27 1 -0.6256 -1.6763 -6.4117 28 1 0.9057 -0.1409 -7.4972 29 1 1.7559 -2.1336 -6.4078 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5149 0.8894 32 1 -0.3633 0.5129 -0.8906 33 1 1.6095 -1.7284 1.2984 34 1 1.7635 -0.1664 2.1431 35 1 5.8451 -2.4907 1.4260 36 1 8.3206 -2.4602 1.2323 37 1 10.2598 -0.0871 0.7180 38 1 6.0296 1.6259 2.6320 39 1 5.1901 -1.3230 0.0128 40 1 3.8407 -2.4815 -0.0862 41 1 3.9154 0.3400 -1.2546 42 1 3.9333 -1.1885 -2.1678 43 1 1.2781 0.8842 -2.4078 44 1 0.2280 1.6001 -5.4919 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036066595.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:36:55 Heat of formation + Delta-G solvation = -102.511780 kcal Electronic energy + Delta-G solvation = -29386.940073 eV Core-core repulsion = 24974.497527 eV Total energy + Delta-G solvation = -4412.442546 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -50.02559 -48.04734 -42.06721 -40.65389 -39.00003 -36.28635 -34.84750 -33.70159 -33.28827 -32.97837 -31.06221 -28.69044 -27.51608 -26.62902 -24.92042 -24.75584 -23.55511 -23.08846 -21.51221 -20.60781 -19.07366 -18.89596 -18.67556 -18.51545 -18.32271 -17.44590 -17.17929 -16.75913 -16.09303 -15.92270 -15.77087 -15.57545 -15.40844 -15.00895 -14.95647 -14.87223 -14.62194 -14.35883 -14.34157 -14.11916 -13.88519 -13.74183 -13.52447 -13.15480 -12.96881 -12.85839 -12.74655 -12.48908 -12.37133 -12.13815 -12.08612 -11.84637 -11.67841 -11.39417 -11.16184 -11.07620 -10.84646 -10.67482 -10.38826 -9.76757 -8.95475 -7.90164 -5.17677 -0.60237 -0.00763 1.38597 1.49913 1.50535 1.58504 1.81080 2.25010 2.46926 2.58985 3.07807 3.19384 3.25807 3.43677 3.60416 3.72913 3.78556 3.79115 3.89529 3.96759 4.03935 4.06750 4.10635 4.28086 4.36973 4.47856 4.51016 4.65201 4.68545 4.76735 4.78308 4.80687 4.83616 4.95668 5.01289 5.16414 5.25453 5.31257 5.40186 5.49128 5.56706 5.62058 6.21611 6.31353 6.53649 6.90007 7.37892 8.14365 8.36678 9.33478 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.013767 B = 0.002686 C = 0.002386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2033.312808 B =10420.639310 C =11733.767900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.101 4.101 3 H 0.051 0.949 4 C 0.127 3.873 5 N -0.594 5.594 6 C 0.564 3.436 7 O -0.570 6.570 8 C -0.168 4.168 9 C -0.036 4.036 10 C -0.132 4.132 11 C 0.052 3.948 12 C 0.326 3.674 13 F -0.204 7.204 14 F -0.194 7.194 15 N -0.478 5.478 16 C 0.141 3.859 17 C 0.106 3.894 18 C -0.143 4.143 19 C 0.179 3.821 20 H 0.053 0.947 21 N -0.732 5.732 22 C -0.228 4.228 23 H 0.080 0.920 24 C -0.078 4.078 25 N -0.972 5.972 26 Si 0.966 3.034 27 H -0.291 1.291 28 H -0.303 1.303 29 H -0.266 1.266 30 H 0.060 0.940 31 H 0.064 0.936 32 H 0.039 0.961 33 H 0.092 0.908 34 H 0.086 0.914 35 H 0.179 0.821 36 H 0.185 0.815 37 H 0.171 0.829 38 H 0.167 0.833 39 H 0.103 0.897 40 H 0.101 0.899 41 H 0.040 0.960 42 H 0.070 0.930 43 H 0.370 0.630 44 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.129 -9.027 13.506 22.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.121 4.121 3 H 0.070 0.930 4 C 0.004 3.996 5 N -0.324 5.324 6 C 0.352 3.648 7 O -0.450 6.450 8 C -0.173 4.173 9 C -0.062 4.062 10 C -0.151 4.151 11 C -0.087 4.087 12 C 0.272 3.728 13 F -0.185 7.185 14 F -0.175 7.175 15 N -0.186 5.186 16 C -0.018 4.018 17 C -0.017 4.017 18 C -0.184 4.184 19 C 0.070 3.930 20 H 0.071 0.929 21 N -0.371 5.371 22 C -0.360 4.360 23 H 0.098 0.902 24 C -0.270 4.270 25 N -0.623 5.623 26 Si 0.796 3.204 27 H -0.219 1.219 28 H -0.230 1.230 29 H -0.191 1.191 30 H 0.079 0.921 31 H 0.083 0.917 32 H 0.058 0.942 33 H 0.110 0.890 34 H 0.105 0.895 35 H 0.196 0.804 36 H 0.202 0.798 37 H 0.188 0.812 38 H 0.184 0.816 39 H 0.120 0.880 40 H 0.119 0.881 41 H 0.059 0.941 42 H 0.088 0.912 43 H 0.201 0.799 44 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 16.367 -8.227 14.110 23.123 hybrid contribution -1.021 -0.093 -1.218 1.592 sum 15.346 -8.321 12.892 21.701 Atomic orbital electron populations 1.21578 0.93927 1.02161 1.01179 1.21700 0.96701 0.99064 0.94612 0.93009 1.21784 0.78112 1.01869 0.97791 1.48142 1.07167 1.59218 1.17912 1.18302 0.86538 0.77072 0.82873 1.90789 1.75460 1.48474 1.30304 1.20992 0.93928 0.97704 1.04664 1.22148 0.94717 0.97641 0.91716 1.22143 0.94411 0.99388 0.99191 1.22283 0.97127 0.91201 0.98065 1.20489 0.85107 0.72792 0.94452 1.93008 1.87794 1.67265 1.70411 1.93020 1.87966 1.40903 1.95649 1.67345 1.10152 1.28631 1.12497 1.22861 0.88134 0.97895 0.92884 1.22235 0.99105 0.98164 0.82159 1.22486 0.98454 0.99897 0.97551 1.20447 0.91616 0.95536 0.85361 0.92883 1.42613 1.76833 1.10851 1.06822 1.19603 1.33526 0.94431 0.88410 0.90192 1.25485 1.03291 0.96870 1.01326 1.69818 1.52093 1.11177 1.29235 0.85236 0.77850 0.77525 0.79743 1.21864 1.22971 1.19052 0.92060 0.91748 0.94198 0.88970 0.89549 0.80358 0.79756 0.81186 0.81626 0.87951 0.88080 0.94081 0.91166 0.79890 0.94357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.95 9.03 71.98 0.65 -3.30 16 2 C -0.10 -3.03 2.47 -10.57 -0.03 -3.05 16 3 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 4 C 0.13 3.11 5.74 86.51 0.50 3.61 16 5 N -0.59 -13.71 2.97 -821.48 -2.44 -16.14 16 6 C 0.56 14.27 7.27 86.78 0.63 14.90 16 7 O -0.57 -18.48 16.48 -3.89 -0.06 -18.54 16 8 C -0.17 -3.44 5.02 -19.99 -0.10 -3.55 16 9 C -0.04 -0.49 7.50 22.73 0.17 -0.32 16 10 C -0.13 -1.57 9.42 22.33 0.21 -1.36 16 11 C 0.05 0.86 6.58 42.57 0.28 1.14 16 12 C 0.33 4.20 5.72 71.24 0.41 4.61 16 13 F -0.20 -3.95 17.05 44.97 0.77 -3.19 16 14 F -0.19 -2.56 16.45 44.97 0.74 -1.82 16 15 N -0.48 -10.48 9.94 -182.81 -1.82 -12.30 16 16 C 0.14 3.14 10.91 85.02 0.93 4.06 16 17 C 0.11 2.06 5.41 86.36 0.47 2.53 16 18 C -0.14 -4.15 5.66 30.67 0.17 -3.98 16 19 C 0.18 6.11 2.19 45.02 0.10 6.21 16 20 H 0.05 1.79 8.08 -2.39 -0.02 1.77 16 21 N -0.73 -33.89 4.41 -322.82 -1.42 -35.31 16 22 C -0.23 -11.69 9.93 84.03 0.83 -10.85 16 23 H 0.08 3.87 7.83 -2.91 -0.02 3.84 16 24 C -0.08 -4.27 5.50 84.86 0.47 -3.80 16 25 N -0.97 -57.97 13.06 21.65 0.28 -57.69 16 26 Si 0.97 44.28 29.55 68.60 2.03 46.31 16 27 H -0.29 -13.26 7.11 99.48 0.71 -12.55 16 28 H -0.30 -14.27 7.11 99.48 0.71 -13.57 16 29 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 30 H 0.06 1.71 8.14 -2.39 -0.02 1.70 16 31 H 0.06 1.66 8.14 -2.38 -0.02 1.64 16 32 H 0.04 1.49 7.36 -2.39 -0.02 1.47 16 33 H 0.09 1.91 8.14 -2.38 -0.02 1.89 16 34 H 0.09 2.26 7.02 -2.39 -0.02 2.25 16 35 H 0.18 1.41 7.11 -2.91 -0.02 1.39 16 36 H 0.19 0.98 7.59 -2.91 -0.02 0.96 16 37 H 0.17 0.90 8.14 -2.38 -0.02 0.88 16 38 H 0.17 3.65 8.06 -2.91 -0.02 3.63 16 39 H 0.10 1.59 4.53 -2.39 -0.01 1.58 16 40 H 0.10 1.50 8.14 -2.39 -0.02 1.49 16 41 H 0.04 1.35 8.14 -2.38 -0.02 1.33 16 42 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 43 H 0.37 19.12 7.50 -92.71 -0.70 18.43 16 44 H 0.25 14.50 8.31 -92.71 -0.77 13.73 16 Total: -1.00 -70.82 368.08 4.11 -66.71 By element: Atomic # 1 Polarization: 24.78 SS G_CDS: 0.35 Total: 25.13 kcal Atomic # 6 Polarization: 1.15 SS G_CDS: 5.69 Total: 6.84 kcal Atomic # 7 Polarization: -116.05 SS G_CDS: -5.39 Total: -121.44 kcal Atomic # 8 Polarization: -18.48 SS G_CDS: -0.06 Total: -18.54 kcal Atomic # 9 Polarization: -6.52 SS G_CDS: 1.51 Total: -5.01 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.31 kcal Total: -70.82 4.11 -66.71 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036066595.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.800 kcal (2) G-P(sol) polarization free energy of solvation -70.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds