Wall clock time and date at job start Wed Apr 1 2020 00:37:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.52812 * 2 1 4 4 C 1.53168 * 109.47905 * 239.92280 * 2 1 3 5 5 N 1.46929 * 108.76304 * 185.40754 * 4 2 1 6 6 C 1.34778 * 120.62795 * 233.63009 * 5 4 2 7 7 O 1.21556 * 120.00200 * 174.16853 * 6 5 4 8 8 C 1.47835 * 120.00022 * 354.16047 * 6 5 4 9 9 C 1.40026 * 120.56487 * 319.47867 * 8 6 5 10 10 C 1.38355 * 118.29083 * 179.73092 * 9 8 6 11 11 C 1.38348 * 119.30426 * 0.53960 * 10 9 8 12 12 C 1.50695 * 119.46265 * 179.69605 * 11 10 9 13 13 F 1.39901 * 109.47569 * 210.02285 * 12 11 10 14 14 F 1.39903 * 109.47280 * 330.02424 * 12 11 10 15 15 N 1.31932 * 121.07750 * 359.72391 * 11 10 9 16 16 C 1.31694 * 121.88300 * 359.97438 * 15 11 10 17 17 C 1.46924 * 118.74207 * 53.61291 * 5 4 2 18 18 C 1.53189 * 108.77679 * 306.38979 * 17 5 4 19 19 C 1.53042 * 109.49484 * 120.08284 * 2 1 3 20 20 H 1.09000 * 109.45758 * 301.32201 * 19 2 1 21 21 N 1.46500 * 109.46509 * 61.29398 * 19 2 1 22 22 C 1.36926 * 119.99945 * 205.02684 * 21 19 2 23 23 H 1.08000 * 120.00822 * 0.02562 * 22 21 19 24 24 C 1.38820 * 119.99838 * 180.02562 * 22 21 19 25 25 N 1.31615 * 119.99711 * 359.97438 * 24 22 21 26 26 Si 1.86795 * 119.99939 * 180.02562 * 24 22 21 27 27 H 1.48504 * 109.47074 * 179.97438 * 26 24 22 28 28 H 1.48500 * 109.47341 * 299.99728 * 26 24 22 29 29 H 1.48498 * 109.47296 * 59.99620 * 26 24 22 30 30 H 1.08991 * 109.47247 * 299.91878 * 1 2 3 31 31 H 1.09000 * 109.46875 * 59.92442 * 1 2 3 32 32 H 1.09001 * 109.47344 * 179.91868 * 1 2 3 33 33 H 1.08999 * 109.58918 * 65.62918 * 4 2 1 34 34 H 1.09001 * 109.70687 * 305.26131 * 4 2 1 35 35 H 1.08001 * 120.84956 * 359.96685 * 9 8 6 36 36 H 1.08007 * 120.34609 * 180.27761 * 10 9 8 37 37 H 1.09005 * 109.46883 * 90.02502 * 12 11 10 38 38 H 1.08000 * 119.71997 * 179.97438 * 16 15 11 39 39 H 1.09003 * 109.59035 * 186.59740 * 17 5 4 40 40 H 1.09002 * 109.58705 * 66.17643 * 17 5 4 41 41 H 1.09006 * 109.49415 * 294.68670 * 18 17 5 42 42 H 1.08995 * 109.52821 * 174.60047 * 18 17 5 43 43 H 0.96992 * 119.99415 * 25.03097 * 21 19 2 44 44 H 0.96998 * 120.00041 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0407 -0.7237 -1.2496 5 7 3.5041 -0.8290 -1.1698 6 6 4.2804 -0.3854 -2.1782 7 8 5.4899 -0.3801 -2.0571 8 6 3.6610 0.0946 -3.4318 9 6 2.5641 -0.5762 -3.9864 10 6 2.0177 -0.0830 -5.1578 11 6 2.5741 1.0396 -5.7445 12 6 1.9861 1.5758 -7.0242 13 9 2.9913 2.1922 -7.7771 14 9 1.4318 0.5228 -7.7599 15 7 3.6115 1.6481 -5.2022 16 6 4.1630 1.2206 -4.0853 17 6 4.1050 -1.4266 0.0304 18 6 3.5708 -0.6951 1.2658 19 6 2.0407 -0.7231 1.2484 20 1 1.6583 -0.2244 2.1389 21 7 1.5782 -2.1131 1.2309 22 6 1.4475 -2.8060 2.4047 23 1 1.6850 -2.3277 3.3435 24 6 1.0098 -4.1232 2.3880 25 7 0.7199 -4.7059 1.2440 26 14 0.8308 -5.0682 3.9894 27 1 0.3504 -6.4436 3.7014 28 1 2.1469 -5.1362 4.6738 29 1 -0.1478 -4.3760 4.8659 30 1 -0.3633 0.5125 0.8906 31 1 -0.3633 0.5150 -0.8893 32 1 -0.3634 -1.0277 -0.0015 33 1 1.7631 -0.1577 -2.1388 34 1 1.6048 -1.7214 -1.3005 35 1 2.1527 -1.4537 -3.5097 36 1 1.1682 -0.5718 -5.6119 37 1 1.2094 2.3039 -6.7901 38 1 5.0117 1.7454 -3.6721 39 1 5.1893 -1.3246 -0.0143 40 1 3.8373 -2.4818 0.0864 41 1 3.9159 0.3389 1.2538 42 1 3.9335 -1.1893 2.1670 43 1 1.3647 -2.5425 0.3878 44 1 0.4137 -5.6262 1.2324 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036066598.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:37:00 Heat of formation + Delta-G solvation = -80.127045 kcal Electronic energy + Delta-G solvation = -29909.078881 eV Core-core repulsion = 25497.607011 eV Total energy + Delta-G solvation = -4411.471871 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.34797 -47.35064 -41.10556 -39.60980 -37.81402 -34.53445 -33.33121 -32.76963 -32.48470 -31.45994 -29.36553 -27.56922 -26.41434 -25.17149 -24.21140 -23.60538 -22.88312 -21.73271 -20.18525 -18.69450 -18.12456 -17.88437 -17.83116 -17.43670 -17.21051 -16.44952 -16.00883 -15.26746 -15.04863 -14.72091 -14.56358 -14.34044 -14.14734 -14.12825 -14.02059 -13.71041 -13.59237 -13.33314 -13.22891 -12.95026 -12.85579 -12.63860 -12.23566 -11.93788 -11.68980 -11.51441 -11.24433 -10.94770 -10.87728 -10.65580 -10.43159 -10.39472 -10.32536 -10.19712 -9.98845 -9.76667 -9.64793 -9.47017 -8.99535 -8.40355 -7.06187 -5.86885 -3.15190 0.20247 0.77975 2.55888 2.92372 3.02713 3.34477 3.37670 3.43163 3.43612 3.69116 3.90292 4.27733 4.37337 4.45948 4.51289 4.53436 4.75623 4.78797 4.92147 5.11246 5.22970 5.28362 5.47693 5.49553 5.52058 5.60750 5.63894 5.66128 5.79461 5.80832 5.94724 6.05553 6.10202 6.23106 6.29148 6.38817 6.47059 6.62762 6.67639 6.81065 6.87275 7.32123 7.48586 7.61948 8.10779 8.31786 9.43685 9.98533 10.33636 11.35544 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.018458 B = 0.002755 C = 0.002602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1516.623437 B =10162.554927 C =10760.389788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.109 4.109 3 H 0.067 0.933 4 C 0.103 3.897 5 N -0.590 5.590 6 C 0.558 3.442 7 O -0.537 6.537 8 C -0.155 4.155 9 C -0.041 4.041 10 C -0.144 4.144 11 C 0.061 3.939 12 C 0.328 3.672 13 F -0.186 7.186 14 F -0.193 7.193 15 N -0.458 5.458 16 C 0.154 3.846 17 C 0.119 3.881 18 C -0.149 4.149 19 C 0.178 3.822 20 H 0.052 0.948 21 N -0.718 5.718 22 C -0.239 4.239 23 H 0.069 0.931 24 C -0.010 4.010 25 N -0.933 5.933 26 Si 0.905 3.095 27 H -0.292 1.292 28 H -0.286 1.286 29 H -0.287 1.287 30 H 0.055 0.945 31 H 0.042 0.958 32 H 0.072 0.928 33 H 0.078 0.922 34 H 0.083 0.917 35 H 0.155 0.845 36 H 0.152 0.848 37 H 0.132 0.868 38 H 0.173 0.827 39 H 0.081 0.919 40 H 0.085 0.915 41 H 0.049 0.951 42 H 0.076 0.924 43 H 0.383 0.617 44 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.120 12.926 -13.094 18.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.129 4.129 3 H 0.085 0.915 4 C -0.019 4.019 5 N -0.321 5.321 6 C 0.344 3.656 7 O -0.416 6.416 8 C -0.161 4.161 9 C -0.067 4.067 10 C -0.164 4.164 11 C -0.078 4.078 12 C 0.273 3.727 13 F -0.167 7.167 14 F -0.174 7.174 15 N -0.166 5.166 16 C -0.004 4.004 17 C -0.002 4.002 18 C -0.190 4.190 19 C 0.068 3.932 20 H 0.070 0.930 21 N -0.361 5.361 22 C -0.370 4.370 23 H 0.087 0.913 24 C -0.206 4.206 25 N -0.582 5.582 26 Si 0.736 3.264 27 H -0.218 1.218 28 H -0.213 1.213 29 H -0.213 1.213 30 H 0.074 0.926 31 H 0.061 0.939 32 H 0.091 0.909 33 H 0.096 0.904 34 H 0.101 0.899 35 H 0.172 0.828 36 H 0.170 0.830 37 H 0.149 0.851 38 H 0.190 0.810 39 H 0.099 0.901 40 H 0.104 0.896 41 H 0.067 0.933 42 H 0.094 0.906 43 H 0.218 0.782 44 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 0.846 13.558 -13.290 19.005 hybrid contribution -0.532 -1.620 1.014 1.984 sum 0.314 11.938 -12.276 17.127 Atomic orbital electron populations 1.21680 0.94005 1.03330 1.00557 1.21714 0.96589 0.98898 0.95693 0.91455 1.22154 0.79065 1.01907 0.98793 1.48061 1.07088 1.58877 1.18088 1.18000 0.86555 0.78115 0.82890 1.90790 1.13572 1.55815 1.81397 1.21216 0.97900 0.98915 0.98029 1.22008 0.92223 0.98759 0.93733 1.21826 1.02054 0.96386 0.96165 1.21830 0.94595 0.94404 0.96998 1.20085 0.86605 0.84138 0.81853 1.93043 1.63070 1.82808 1.77770 1.93030 1.85602 1.59997 1.78808 1.67361 1.08136 1.30613 1.10466 1.22901 0.96849 0.91966 0.88728 1.21663 0.97934 0.98173 0.82402 1.22530 1.00062 0.98843 0.97601 1.20224 0.90953 0.87345 0.94677 0.92975 1.42432 1.79045 1.07674 1.06904 1.19164 1.37384 0.93905 0.86536 0.91272 1.24693 1.02153 0.97137 0.96665 1.69618 1.51632 1.13158 1.23751 0.86303 0.77798 0.79189 0.83078 1.21780 1.21318 1.21348 0.92570 0.93887 0.90876 0.90358 0.89916 0.82761 0.82999 0.85096 0.81010 0.90074 0.89631 0.93268 0.90590 0.78240 0.93447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.88 9.05 37.16 0.34 -1.54 16 2 C -0.11 -1.54 2.67 -90.51 -0.24 -1.78 16 3 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 4 C 0.10 1.38 3.92 -3.72 -0.01 1.36 16 5 N -0.59 -8.75 2.97 -173.90 -0.52 -9.27 16 6 C 0.56 8.37 7.34 -12.33 -0.09 8.28 16 7 O -0.54 -9.69 16.36 5.32 0.09 -9.60 16 8 C -0.16 -1.91 5.12 -104.82 -0.54 -2.44 16 9 C -0.04 -0.42 7.52 -38.87 -0.29 -0.71 16 10 C -0.14 -1.29 9.42 -39.50 -0.37 -1.66 16 11 C 0.06 0.60 6.58 -82.51 -0.54 0.06 16 12 C 0.33 2.64 5.72 36.00 0.21 2.85 16 13 F -0.19 -1.97 17.05 2.25 0.04 -1.93 16 14 F -0.19 -1.68 16.45 2.25 0.04 -1.65 16 15 N -0.46 -5.36 9.94 -9.14 -0.09 -5.45 16 16 C 0.15 1.82 10.82 -17.13 -0.19 1.63 16 17 C 0.12 1.99 6.18 -3.71 -0.02 1.97 16 18 C -0.15 -2.45 5.78 -26.61 -0.15 -2.61 16 19 C 0.18 3.10 2.53 -67.88 -0.17 2.93 16 20 H 0.05 0.95 8.08 -51.93 -0.42 0.53 16 21 N -0.72 -15.52 3.64 -53.38 -0.19 -15.71 16 22 C -0.24 -6.00 9.93 -15.06 -0.15 -6.15 16 23 H 0.07 1.71 7.83 -52.49 -0.41 1.30 16 24 C -0.01 -0.28 5.50 -17.43 -0.10 -0.37 16 25 N -0.93 -26.06 13.06 55.49 0.72 -25.34 16 26 Si 0.91 21.29 29.55 -169.99 -5.02 16.27 16 27 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 28 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 29 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 30 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 31 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.07 1.18 7.54 -51.93 -0.39 0.79 16 33 H 0.08 0.86 4.76 -51.93 -0.25 0.62 16 34 H 0.08 1.22 6.64 -51.93 -0.34 0.88 16 35 H 0.15 1.46 6.70 -52.49 -0.35 1.11 16 36 H 0.15 1.00 7.59 -52.48 -0.40 0.60 16 37 H 0.13 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.17 1.86 8.06 -52.49 -0.42 1.43 16 39 H 0.08 1.37 7.00 -51.93 -0.36 1.00 16 40 H 0.09 1.63 7.74 -51.93 -0.40 1.23 16 41 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 43 H 0.38 8.72 5.93 -40.82 -0.24 8.47 16 44 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 LS Contribution 363.42 15.07 5.48 5.48 Total: -1.00 -30.20 363.42 -7.45 -37.66 By element: Atomic # 1 Polarization: 13.40 SS G_CDS: -5.66 Total: 7.73 kcal Atomic # 6 Polarization: 4.14 SS G_CDS: -2.33 Total: 1.81 kcal Atomic # 7 Polarization: -55.69 SS G_CDS: -0.08 Total: -55.77 kcal Atomic # 8 Polarization: -9.69 SS G_CDS: 0.09 Total: -9.60 kcal Atomic # 9 Polarization: -3.65 SS G_CDS: 0.08 Total: -3.58 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -30.20 -7.45 -37.66 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036066598.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.469 kcal (2) G-P(sol) polarization free energy of solvation -30.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds