Wall clock time and date at job start Wed Apr 1 2020 00:36:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.52812 * 2 1 4 4 C 1.53168 * 109.47905 * 239.92280 * 2 1 3 5 5 N 1.46929 * 108.76304 * 185.40754 * 4 2 1 6 6 C 1.34778 * 120.62795 * 233.63009 * 5 4 2 7 7 O 1.21556 * 120.00200 * 174.16853 * 6 5 4 8 8 C 1.47835 * 120.00022 * 354.16047 * 6 5 4 9 9 C 1.40026 * 120.56487 * 319.47867 * 8 6 5 10 10 C 1.38355 * 118.29083 * 179.73092 * 9 8 6 11 11 C 1.38348 * 119.30426 * 0.53960 * 10 9 8 12 12 C 1.50695 * 119.46265 * 179.69605 * 11 10 9 13 13 F 1.39901 * 109.47569 * 210.02285 * 12 11 10 14 14 F 1.39903 * 109.47280 * 330.02424 * 12 11 10 15 15 N 1.31932 * 121.07750 * 359.72391 * 11 10 9 16 16 C 1.31694 * 121.88300 * 359.97438 * 15 11 10 17 17 C 1.46924 * 118.74207 * 53.61291 * 5 4 2 18 18 C 1.53189 * 108.77679 * 306.38979 * 17 5 4 19 19 C 1.53042 * 109.49484 * 120.08284 * 2 1 3 20 20 H 1.09000 * 109.45758 * 301.32201 * 19 2 1 21 21 N 1.46500 * 109.46509 * 61.29398 * 19 2 1 22 22 C 1.36926 * 119.99945 * 205.02684 * 21 19 2 23 23 H 1.08000 * 120.00822 * 0.02562 * 22 21 19 24 24 C 1.38820 * 119.99838 * 180.02562 * 22 21 19 25 25 N 1.31615 * 119.99711 * 359.97438 * 24 22 21 26 26 Si 1.86795 * 119.99939 * 180.02562 * 24 22 21 27 27 H 1.48504 * 109.47074 * 179.97438 * 26 24 22 28 28 H 1.48500 * 109.47341 * 299.99728 * 26 24 22 29 29 H 1.48498 * 109.47296 * 59.99620 * 26 24 22 30 30 H 1.08991 * 109.47247 * 299.91878 * 1 2 3 31 31 H 1.09000 * 109.46875 * 59.92442 * 1 2 3 32 32 H 1.09001 * 109.47344 * 179.91868 * 1 2 3 33 33 H 1.08999 * 109.58918 * 65.62918 * 4 2 1 34 34 H 1.09001 * 109.70687 * 305.26131 * 4 2 1 35 35 H 1.08001 * 120.84956 * 359.96685 * 9 8 6 36 36 H 1.08007 * 120.34609 * 180.27761 * 10 9 8 37 37 H 1.09005 * 109.46883 * 90.02502 * 12 11 10 38 38 H 1.08000 * 119.71997 * 179.97438 * 16 15 11 39 39 H 1.09003 * 109.59035 * 186.59740 * 17 5 4 40 40 H 1.09002 * 109.58705 * 66.17643 * 17 5 4 41 41 H 1.09006 * 109.49415 * 294.68670 * 18 17 5 42 42 H 1.08995 * 109.52821 * 174.60047 * 18 17 5 43 43 H 0.96992 * 119.99415 * 25.03097 * 21 19 2 44 44 H 0.96998 * 120.00041 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0407 -0.7237 -1.2496 5 7 3.5041 -0.8290 -1.1698 6 6 4.2804 -0.3854 -2.1782 7 8 5.4899 -0.3801 -2.0571 8 6 3.6610 0.0946 -3.4318 9 6 2.5641 -0.5762 -3.9864 10 6 2.0177 -0.0830 -5.1578 11 6 2.5741 1.0396 -5.7445 12 6 1.9861 1.5758 -7.0242 13 9 2.9913 2.1922 -7.7771 14 9 1.4318 0.5228 -7.7599 15 7 3.6115 1.6481 -5.2022 16 6 4.1630 1.2206 -4.0853 17 6 4.1050 -1.4266 0.0304 18 6 3.5708 -0.6951 1.2658 19 6 2.0407 -0.7231 1.2484 20 1 1.6583 -0.2244 2.1389 21 7 1.5782 -2.1131 1.2309 22 6 1.4475 -2.8060 2.4047 23 1 1.6850 -2.3277 3.3435 24 6 1.0098 -4.1232 2.3880 25 7 0.7199 -4.7059 1.2440 26 14 0.8308 -5.0682 3.9894 27 1 0.3504 -6.4436 3.7014 28 1 2.1469 -5.1362 4.6738 29 1 -0.1478 -4.3760 4.8659 30 1 -0.3633 0.5125 0.8906 31 1 -0.3633 0.5150 -0.8893 32 1 -0.3634 -1.0277 -0.0015 33 1 1.7631 -0.1577 -2.1388 34 1 1.6048 -1.7214 -1.3005 35 1 2.1527 -1.4537 -3.5097 36 1 1.1682 -0.5718 -5.6119 37 1 1.2094 2.3039 -6.7901 38 1 5.0117 1.7454 -3.6721 39 1 5.1893 -1.3246 -0.0143 40 1 3.8373 -2.4818 0.0864 41 1 3.9159 0.3389 1.2538 42 1 3.9335 -1.1893 2.1670 43 1 1.3647 -2.5425 0.3878 44 1 0.4137 -5.6262 1.2324 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036066598.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:36:59 Heat of formation + Delta-G solvation = -97.783996 kcal Electronic energy + Delta-G solvation = -29909.844544 eV Core-core repulsion = 25497.607011 eV Total energy + Delta-G solvation = -4412.237533 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -50.00737 -48.02970 -42.10749 -40.69244 -39.12328 -36.00197 -34.49454 -34.17002 -33.29385 -32.83042 -31.01570 -28.41410 -27.61122 -26.48304 -25.49839 -24.89933 -23.81111 -22.94840 -21.33873 -19.96758 -19.29441 -18.86035 -18.66782 -18.49460 -18.29074 -17.42639 -17.08976 -16.63860 -16.11160 -15.96599 -15.86237 -15.65495 -15.39024 -15.15106 -14.88875 -14.76813 -14.57123 -14.35458 -14.29572 -14.21437 -14.03242 -13.67551 -13.48687 -13.11919 -12.95339 -12.83581 -12.66395 -12.44670 -12.34920 -12.17817 -11.97295 -11.84420 -11.59732 -11.42870 -11.30310 -10.95661 -10.85183 -10.66927 -10.40180 -9.68857 -8.91788 -7.89094 -5.13932 -0.65299 -0.02306 1.46448 1.50219 1.50844 1.56202 1.80929 2.25717 2.48989 2.59879 3.08757 3.20044 3.27306 3.45232 3.59673 3.71904 3.74876 3.84224 3.90073 4.00270 4.06723 4.11275 4.13404 4.30205 4.40327 4.45861 4.50207 4.55666 4.69474 4.72036 4.82661 4.82769 4.97064 5.07923 5.13658 5.14980 5.23943 5.27582 5.32685 5.49540 5.58805 5.63743 6.27419 6.33732 6.52780 6.91352 7.42110 8.17388 8.41862 9.33608 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.018458 B = 0.002755 C = 0.002602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1516.623437 B =10162.554927 C =10760.389788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.102 4.102 3 H 0.088 0.912 4 C 0.108 3.892 5 N -0.589 5.589 6 C 0.561 3.439 7 O -0.573 6.573 8 C -0.168 4.168 9 C -0.039 4.039 10 C -0.133 4.133 11 C 0.059 3.941 12 C 0.326 3.674 13 F -0.203 7.203 14 F -0.196 7.196 15 N -0.473 5.473 16 C 0.151 3.849 17 C 0.127 3.873 18 C -0.140 4.140 19 C 0.173 3.827 20 H 0.047 0.953 21 N -0.722 5.722 22 C -0.229 4.229 23 H 0.071 0.929 24 C -0.069 4.069 25 N -0.964 5.964 26 Si 0.959 3.041 27 H -0.301 1.301 28 H -0.285 1.285 29 H -0.282 1.282 30 H 0.054 0.946 31 H 0.075 0.925 32 H 0.043 0.957 33 H 0.110 0.890 34 H 0.067 0.933 35 H 0.162 0.838 36 H 0.181 0.819 37 H 0.177 0.823 38 H 0.174 0.826 39 H 0.076 0.924 40 H 0.056 0.944 41 H 0.069 0.931 42 H 0.060 0.940 43 H 0.376 0.624 44 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.287 14.681 -14.207 20.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.121 4.121 3 H 0.106 0.894 4 C -0.014 4.014 5 N -0.319 5.319 6 C 0.349 3.651 7 O -0.454 6.454 8 C -0.173 4.173 9 C -0.065 4.065 10 C -0.152 4.152 11 C -0.080 4.080 12 C 0.272 3.728 13 F -0.184 7.184 14 F -0.177 7.177 15 N -0.182 5.182 16 C -0.007 4.007 17 C 0.005 3.995 18 C -0.181 4.181 19 C 0.064 3.936 20 H 0.065 0.935 21 N -0.363 5.363 22 C -0.361 4.361 23 H 0.089 0.911 24 C -0.261 4.261 25 N -0.615 5.615 26 Si 0.790 3.210 27 H -0.227 1.227 28 H -0.211 1.211 29 H -0.208 1.208 30 H 0.073 0.927 31 H 0.094 0.906 32 H 0.062 0.938 33 H 0.127 0.873 34 H 0.085 0.915 35 H 0.180 0.820 36 H 0.199 0.801 37 H 0.193 0.807 38 H 0.191 0.809 39 H 0.095 0.905 40 H 0.075 0.925 41 H 0.088 0.912 42 H 0.079 0.921 43 H 0.210 0.790 44 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -0.324 15.359 -14.393 21.052 hybrid contribution -0.145 -2.085 1.305 2.464 sum -0.468 13.274 -13.088 18.647 Atomic orbital electron populations 1.21604 0.93302 1.01828 1.02146 1.21663 0.97061 0.99387 0.94036 0.89359 1.22201 0.77845 1.01522 0.99790 1.48040 1.07752 1.58614 1.17514 1.18379 0.86074 0.77203 0.83447 1.90767 1.15210 1.57292 1.82149 1.20955 0.99195 0.99977 0.97211 1.22130 0.91524 0.98686 0.94205 1.22091 1.02305 0.95621 0.95198 1.22287 0.93859 0.94339 0.97544 1.20528 0.87013 0.84683 0.80548 1.93011 1.64117 1.83085 1.78160 1.93026 1.85483 1.60393 1.78834 1.67402 1.09005 1.31321 1.10463 1.22926 0.96970 0.91954 0.88857 1.21382 0.97796 0.96742 0.83581 1.22400 0.99195 0.99744 0.96774 1.20430 0.91334 0.85394 0.96446 0.93513 1.42512 1.78988 1.09220 1.05592 1.19481 1.34911 0.93948 0.87735 0.91117 1.25305 1.03588 0.98304 0.98933 1.69748 1.53680 1.12889 1.25211 0.85425 0.77633 0.77582 0.80364 1.22739 1.21139 1.20796 0.92683 0.90638 0.93828 0.87261 0.91454 0.82009 0.80139 0.80678 0.80910 0.90526 0.92546 0.91241 0.92122 0.78978 0.94323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.28 9.05 71.98 0.65 -2.63 16 2 C -0.10 -2.66 2.67 -10.72 -0.03 -2.69 16 3 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 4 C 0.11 2.71 3.92 86.35 0.34 3.05 16 5 N -0.59 -17.07 2.97 -822.36 -2.44 -19.51 16 6 C 0.56 16.47 7.34 86.78 0.64 17.11 16 7 O -0.57 -20.80 16.36 -3.89 -0.06 -20.86 16 8 C -0.17 -3.86 5.12 -19.99 -0.10 -3.96 16 9 C -0.04 -0.71 7.52 22.73 0.17 -0.54 16 10 C -0.13 -1.91 9.42 22.32 0.21 -1.70 16 11 C 0.06 0.99 6.58 42.57 0.28 1.27 16 12 C 0.33 4.17 5.72 71.23 0.41 4.58 16 13 F -0.20 -3.84 17.05 44.97 0.77 -3.08 16 14 F -0.20 -2.78 16.45 44.97 0.74 -2.05 16 15 N -0.47 -10.12 9.94 -182.82 -1.82 -11.94 16 16 C 0.15 3.36 10.82 85.02 0.92 4.28 16 17 C 0.13 4.29 6.18 86.36 0.53 4.82 16 18 C -0.14 -4.55 5.78 30.67 0.18 -4.37 16 19 C 0.17 5.87 2.53 45.02 0.11 5.99 16 20 H 0.05 1.66 8.08 -2.39 -0.02 1.64 16 21 N -0.72 -31.41 3.64 -322.80 -1.18 -32.59 16 22 C -0.23 -11.56 9.93 84.04 0.83 -10.73 16 23 H 0.07 3.50 7.83 -2.91 -0.02 3.47 16 24 C -0.07 -3.69 5.50 84.86 0.47 -3.22 16 25 N -0.96 -54.96 13.06 21.65 0.28 -54.68 16 26 Si 0.96 44.29 29.55 68.60 2.03 46.32 16 27 H -0.30 -14.22 7.11 99.48 0.71 -13.52 16 28 H -0.28 -12.90 7.11 99.48 0.71 -12.20 16 29 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 30 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 31 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 32 H 0.04 1.36 7.54 -2.39 -0.02 1.34 16 33 H 0.11 2.08 4.76 -2.39 -0.01 2.07 16 34 H 0.07 1.95 6.64 -2.39 -0.02 1.93 16 35 H 0.16 2.68 6.70 -2.91 -0.02 2.66 16 36 H 0.18 1.57 7.59 -2.91 -0.02 1.55 16 37 H 0.18 0.74 8.14 -2.38 -0.02 0.72 16 38 H 0.17 3.65 8.06 -2.91 -0.02 3.62 16 39 H 0.08 2.64 7.00 -2.39 -0.02 2.63 16 40 H 0.06 2.23 7.74 -2.39 -0.02 2.21 16 41 H 0.07 1.99 8.14 -2.38 -0.02 1.97 16 42 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 43 H 0.38 17.43 5.93 -92.71 -0.55 16.88 16 44 H 0.25 14.01 8.31 -92.71 -0.77 13.24 16 Total: -1.00 -66.37 363.42 4.42 -61.95 By element: Atomic # 1 Polarization: 24.68 SS G_CDS: 0.50 Total: 25.18 kcal Atomic # 6 Polarization: 5.64 SS G_CDS: 5.61 Total: 11.25 kcal Atomic # 7 Polarization: -113.56 SS G_CDS: -5.15 Total: -118.71 kcal Atomic # 8 Polarization: -20.80 SS G_CDS: -0.06 Total: -20.86 kcal Atomic # 9 Polarization: -6.63 SS G_CDS: 1.51 Total: -5.12 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 2.03 Total: 46.32 kcal Total: -66.37 4.42 -61.95 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036066598.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.835 kcal (2) G-P(sol) polarization free energy of solvation -66.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds