Wall clock time and date at job start Wed Apr 1 2020 00:37:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09002 * 109.49663 * 2 1 4 4 C 1.53186 * 109.49757 * 239.93202 * 2 1 3 5 5 N 1.46922 * 108.77698 * 185.41258 * 4 2 1 6 6 C 1.34777 * 120.63169 * 233.58620 * 5 4 2 7 7 O 1.21552 * 120.00206 * 5.74478 * 6 5 4 8 8 C 1.47838 * 119.99902 * 186.01056 * 6 5 4 9 9 C 1.40022 * 120.55784 * 40.99467 * 8 6 5 10 10 C 1.38359 * 118.28865 * 179.97438 * 9 8 6 11 11 C 1.38352 * 119.30293 * 359.97438 * 10 9 8 12 12 C 1.50705 * 119.45747 * 179.97438 * 11 10 9 13 13 F 1.39898 * 109.47259 * 300.00215 * 12 11 10 14 14 F 1.39901 * 109.46868 * 60.00573 * 12 11 10 15 15 N 1.31917 * 121.08083 * 0.02562 * 11 10 9 16 16 C 1.31694 * 121.87979 * 359.72487 * 15 11 10 17 17 C 1.46921 * 118.73800 * 53.86304 * 5 4 2 18 18 C 1.53626 * 108.54340 * 306.09566 * 17 5 4 19 19 C 1.53037 * 109.49564 * 120.09415 * 2 1 3 20 20 H 1.09003 * 109.46361 * 61.29807 * 19 2 1 21 21 N 1.46498 * 109.46370 * 301.33615 * 19 2 1 22 22 C 1.36945 * 120.00112 * 155.00190 * 21 19 2 23 23 H 1.07998 * 119.99585 * 0.02562 * 22 21 19 24 24 C 1.38808 * 119.99906 * 180.02562 * 22 21 19 25 25 N 1.31621 * 120.00088 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 119.99700 * 179.97438 * 24 22 21 27 27 H 1.48498 * 109.47097 * 60.00530 * 26 24 22 28 28 H 1.48501 * 109.47154 * 180.02562 * 26 24 22 29 29 H 1.48503 * 109.47151 * 299.99979 * 26 24 22 30 30 H 1.09002 * 109.47033 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.46979 * 300.06318 * 1 2 3 32 32 H 1.08994 * 109.47229 * 60.06463 * 1 2 3 33 33 H 1.09007 * 109.58661 * 65.62686 * 4 2 1 34 34 H 1.09003 * 109.58916 * 305.20316 * 4 2 1 35 35 H 1.08005 * 120.85845 * 359.97438 * 9 8 6 36 36 H 1.08005 * 120.34870 * 180.02562 * 10 9 8 37 37 H 1.09001 * 109.46988 * 180.02562 * 12 11 10 38 38 H 1.08003 * 119.71809 * 180.27645 * 16 15 11 39 39 H 1.09004 * 109.58884 * 65.92613 * 17 5 4 40 40 H 1.08999 * 109.59164 * 186.35601 * 17 5 4 41 41 H 1.09003 * 109.63068 * 294.86447 * 18 17 5 42 42 H 1.08996 * 109.43099 * 174.72876 * 18 17 5 43 43 H 0.97001 * 120.00076 * 335.00407 * 21 19 2 44 44 H 0.97003 * 119.99588 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0413 -0.7235 -1.2497 5 7 3.5046 -0.8288 -1.1698 6 6 4.2811 -0.3859 -2.1784 7 8 3.7807 0.2001 -3.1185 8 6 5.7408 -0.6179 -2.1442 9 6 6.2567 -1.8444 -1.7081 10 6 7.6301 -2.0108 -1.6958 11 6 8.4421 -0.9705 -2.1111 12 6 9.9386 -1.1478 -2.0985 13 9 10.3652 -1.4185 -0.7940 14 9 10.2889 -2.2135 -2.9344 15 7 7.9278 0.1745 -2.5171 16 6 6.6274 0.3795 -2.5515 17 6 4.1051 -1.4318 0.0279 18 6 3.5708 -0.6954 1.2658 19 6 2.0408 -0.7234 1.2482 20 1 1.6967 -1.7576 1.2349 21 7 1.5266 -0.0536 2.4453 22 6 1.3965 -0.7502 3.6171 23 1 1.6734 -1.7932 3.6588 24 6 0.9087 -0.1156 4.7512 25 7 0.5708 1.1555 4.7002 26 14 0.7306 -1.0661 6.3495 27 1 2.0585 -1.5811 6.7697 28 1 0.1919 -0.1678 7.4022 29 1 -0.2007 -2.2049 6.1470 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5148 0.8894 32 1 -0.3633 0.5128 -0.8905 33 1 1.7638 -0.1574 -2.1389 34 1 1.6053 -1.7213 -1.2984 35 1 5.5994 -2.6400 -1.3896 36 1 8.0639 -2.9434 -1.3661 37 1 10.4157 -0.2346 -2.4543 38 1 6.2440 1.3292 -2.8944 39 1 3.8339 -2.4862 0.0814 40 1 5.1896 -1.3332 -0.0178 41 1 3.9159 0.3385 1.2542 42 1 3.9335 -1.1902 2.1667 43 1 1.2782 0.8834 2.4079 44 1 0.2296 1.5987 5.4927 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036066602.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:37:03 Heat of formation + Delta-G solvation = -83.124772 kcal Electronic energy + Delta-G solvation = -29377.710823 eV Core-core repulsion = 24966.108961 eV Total energy + Delta-G solvation = -4411.601862 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -49.46319 -47.44710 -41.22264 -39.70463 -37.75106 -34.92654 -33.65730 -32.61109 -32.43903 -31.55918 -29.44062 -27.89910 -26.41345 -25.14985 -24.18949 -23.51985 -22.55659 -21.77269 -20.40580 -19.43843 -18.25543 -18.10981 -17.70436 -17.44946 -17.13427 -16.55741 -16.21026 -15.31238 -15.13837 -14.97230 -14.66503 -14.46860 -14.17172 -14.05713 -13.91705 -13.80887 -13.72468 -13.56847 -13.40235 -13.11125 -12.77944 -12.52078 -12.36360 -11.89275 -11.74503 -11.68029 -11.27239 -10.99936 -10.88687 -10.76726 -10.53061 -10.47754 -10.30910 -10.26941 -9.93628 -9.82132 -9.69653 -9.68392 -8.96564 -8.66682 -7.03463 -5.83312 -3.12602 0.07695 0.66522 2.40162 2.71642 2.89464 3.19506 3.38491 3.43374 3.44585 3.69986 3.89992 4.11694 4.25876 4.35330 4.51973 4.55326 4.56355 4.69399 4.90808 5.10620 5.14638 5.15507 5.21979 5.35027 5.41851 5.44746 5.49190 5.59472 5.66601 5.83436 5.93022 5.98538 6.04143 6.20410 6.25748 6.35214 6.40501 6.51774 6.71374 6.83844 6.95621 7.17621 7.27777 7.61900 7.91848 8.34712 9.46191 10.02845 10.37530 11.38954 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.013549 B = 0.002722 C = 0.002375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2066.053293 B =10284.039067 C =11785.802849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.110 4.110 3 H 0.070 0.930 4 C 0.120 3.880 5 N -0.595 5.595 6 C 0.561 3.439 7 O -0.534 6.534 8 C -0.153 4.153 9 C -0.043 4.043 10 C -0.138 4.138 11 C 0.063 3.937 12 C 0.324 3.676 13 F -0.191 7.191 14 F -0.192 7.192 15 N -0.459 5.459 16 C 0.155 3.845 17 C 0.096 3.904 18 C -0.152 4.152 19 C 0.184 3.816 20 H 0.048 0.952 21 N -0.720 5.720 22 C -0.241 4.241 23 H 0.069 0.931 24 C -0.011 4.011 25 N -0.931 5.931 26 Si 0.906 3.094 27 H -0.286 1.286 28 H -0.291 1.291 29 H -0.286 1.286 30 H 0.051 0.949 31 H 0.074 0.926 32 H 0.044 0.956 33 H 0.091 0.909 34 H 0.070 0.930 35 H 0.153 0.847 36 H 0.149 0.851 37 H 0.134 0.866 38 H 0.175 0.825 39 H 0.072 0.928 40 H 0.080 0.920 41 H 0.060 0.940 42 H 0.077 0.923 43 H 0.384 0.616 44 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.300 -6.202 -15.576 22.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.130 4.130 3 H 0.089 0.911 4 C -0.002 4.002 5 N -0.327 5.327 6 C 0.347 3.653 7 O -0.411 6.411 8 C -0.158 4.158 9 C -0.069 4.069 10 C -0.157 4.157 11 C -0.075 4.075 12 C 0.270 3.730 13 F -0.172 7.172 14 F -0.174 7.174 15 N -0.167 5.167 16 C -0.003 4.003 17 C -0.026 4.026 18 C -0.193 4.193 19 C 0.074 3.926 20 H 0.066 0.934 21 N -0.360 5.360 22 C -0.372 4.372 23 H 0.087 0.913 24 C -0.207 4.207 25 N -0.579 5.579 26 Si 0.737 3.263 27 H -0.213 1.213 28 H -0.217 1.217 29 H -0.213 1.213 30 H 0.070 0.930 31 H 0.093 0.907 32 H 0.063 0.937 33 H 0.109 0.891 34 H 0.089 0.911 35 H 0.170 0.830 36 H 0.167 0.833 37 H 0.151 0.849 38 H 0.192 0.808 39 H 0.090 0.910 40 H 0.098 0.902 41 H 0.079 0.921 42 H 0.096 0.904 43 H 0.218 0.782 44 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 14.572 -5.373 -16.148 22.405 hybrid contribution -0.637 -1.010 1.453 1.880 sum 13.936 -6.383 -14.695 21.234 Atomic orbital electron populations 1.21659 0.93928 1.01830 1.01971 1.21749 0.96731 1.00125 0.94422 0.91108 1.21806 0.77496 1.01147 0.99771 1.48088 1.07463 1.59439 1.17712 1.17999 0.85428 0.79074 0.82751 1.90801 1.74508 1.41353 1.34478 1.21169 0.95535 0.96600 1.02479 1.21940 0.95316 0.96629 0.92988 1.21868 0.93893 1.00374 0.99615 1.21676 0.96000 0.91354 0.98514 1.20110 0.89463 0.89219 0.74254 1.93051 1.90654 1.95123 1.38352 1.93038 1.92755 1.60135 1.71424 1.67307 1.14867 1.21274 1.13284 1.22896 0.86564 0.98793 0.92075 1.22308 0.97911 0.97504 0.84920 1.22791 1.00542 1.00414 0.95544 1.20190 0.90195 0.95746 0.86511 0.93358 1.42395 1.76443 1.11447 1.05716 1.19154 1.36274 0.94088 0.87717 0.91290 1.24734 1.01914 0.96011 0.98070 1.69648 1.49685 1.09521 1.29074 0.86299 0.77755 0.78735 0.83555 1.21291 1.21719 1.21275 0.93010 0.90658 0.93738 0.89055 0.91148 0.82958 0.83339 0.84893 0.80788 0.90962 0.90223 0.92076 0.90400 0.78174 0.93405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.09 9.02 37.16 0.34 -1.75 16 2 C -0.11 -1.70 2.46 -90.50 -0.22 -1.92 16 3 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 4 C 0.12 1.58 5.72 -3.72 -0.02 1.56 16 5 N -0.60 -7.56 2.97 -173.62 -0.51 -8.07 16 6 C 0.56 7.44 7.33 -12.33 -0.09 7.35 16 7 O -0.53 -8.62 16.37 5.32 0.09 -8.53 16 8 C -0.15 -1.68 5.10 -104.82 -0.53 -2.22 16 9 C -0.04 -0.38 7.53 -38.87 -0.29 -0.67 16 10 C -0.14 -1.16 9.60 -39.49 -0.38 -1.54 16 11 C 0.06 0.60 6.28 -82.51 -0.52 0.08 16 12 C 0.32 2.54 5.54 36.01 0.20 2.74 16 13 F -0.19 -1.74 17.25 2.25 0.04 -1.70 16 14 F -0.19 -1.67 17.25 2.25 0.04 -1.63 16 15 N -0.46 -4.85 10.23 -9.14 -0.09 -4.95 16 16 C 0.16 1.68 10.82 -17.13 -0.19 1.49 16 17 C 0.10 1.12 4.98 -3.49 -0.02 1.11 16 18 C -0.15 -2.37 5.67 -26.39 -0.15 -2.52 16 19 C 0.18 3.27 2.19 -67.89 -0.15 3.12 16 20 H 0.05 0.87 8.08 -51.93 -0.42 0.45 16 21 N -0.72 -16.64 4.41 -53.39 -0.24 -16.87 16 22 C -0.24 -6.27 9.93 -15.06 -0.15 -6.42 16 23 H 0.07 1.73 7.83 -52.49 -0.41 1.32 16 24 C -0.01 -0.30 5.50 -17.43 -0.10 -0.40 16 25 N -0.93 -27.15 13.06 55.49 0.72 -26.43 16 26 Si 0.91 21.60 29.55 -169.99 -5.02 16.58 16 27 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 28 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 29 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 30 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.07 1.38 7.36 -51.93 -0.38 0.99 16 32 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.09 1.25 7.00 -51.93 -0.36 0.89 16 34 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 35 H 0.15 1.06 6.74 -52.48 -0.35 0.71 16 36 H 0.15 0.95 8.06 -52.48 -0.42 0.53 16 37 H 0.13 0.74 8.10 -51.93 -0.42 0.32 16 38 H 0.18 1.71 8.06 -52.48 -0.42 1.29 16 39 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 40 H 0.08 0.82 4.78 -51.93 -0.25 0.57 16 41 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 42 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 43 H 0.38 9.67 7.50 -40.82 -0.31 9.36 16 44 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 368.89 15.07 5.56 5.56 Total: -1.00 -30.94 368.89 -7.53 -38.48 By element: Atomic # 1 Polarization: 13.41 SS G_CDS: -5.84 Total: 7.56 kcal Atomic # 6 Polarization: 2.28 SS G_CDS: -2.27 Total: 0.01 kcal Atomic # 7 Polarization: -56.20 SS G_CDS: -0.12 Total: -56.32 kcal Atomic # 8 Polarization: -8.62 SS G_CDS: 0.09 Total: -8.53 kcal Atomic # 9 Polarization: -3.41 SS G_CDS: 0.08 Total: -3.33 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -30.94 -7.53 -38.48 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036066602.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.647 kcal (2) G-P(sol) polarization free energy of solvation -30.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds