Wall clock time and date at job start Wed Apr 1 2020 00:37:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09002 * 109.49663 * 2 1 4 4 C 1.53186 * 109.49757 * 239.93202 * 2 1 3 5 5 N 1.46922 * 108.77698 * 185.41258 * 4 2 1 6 6 C 1.34777 * 120.63169 * 233.58620 * 5 4 2 7 7 O 1.21552 * 120.00206 * 5.74478 * 6 5 4 8 8 C 1.47838 * 119.99902 * 186.01056 * 6 5 4 9 9 C 1.40022 * 120.55784 * 40.99467 * 8 6 5 10 10 C 1.38359 * 118.28865 * 179.97438 * 9 8 6 11 11 C 1.38352 * 119.30293 * 359.97438 * 10 9 8 12 12 C 1.50705 * 119.45747 * 179.97438 * 11 10 9 13 13 F 1.39898 * 109.47259 * 300.00215 * 12 11 10 14 14 F 1.39901 * 109.46868 * 60.00573 * 12 11 10 15 15 N 1.31917 * 121.08083 * 0.02562 * 11 10 9 16 16 C 1.31694 * 121.87979 * 359.72487 * 15 11 10 17 17 C 1.46921 * 118.73800 * 53.86304 * 5 4 2 18 18 C 1.53626 * 108.54340 * 306.09566 * 17 5 4 19 19 C 1.53037 * 109.49564 * 120.09415 * 2 1 3 20 20 H 1.09003 * 109.46361 * 61.29807 * 19 2 1 21 21 N 1.46498 * 109.46370 * 301.33615 * 19 2 1 22 22 C 1.36945 * 120.00112 * 155.00190 * 21 19 2 23 23 H 1.07998 * 119.99585 * 0.02562 * 22 21 19 24 24 C 1.38808 * 119.99906 * 180.02562 * 22 21 19 25 25 N 1.31621 * 120.00088 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 119.99700 * 179.97438 * 24 22 21 27 27 H 1.48498 * 109.47097 * 60.00530 * 26 24 22 28 28 H 1.48501 * 109.47154 * 180.02562 * 26 24 22 29 29 H 1.48503 * 109.47151 * 299.99979 * 26 24 22 30 30 H 1.09002 * 109.47033 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.46979 * 300.06318 * 1 2 3 32 32 H 1.08994 * 109.47229 * 60.06463 * 1 2 3 33 33 H 1.09007 * 109.58661 * 65.62686 * 4 2 1 34 34 H 1.09003 * 109.58916 * 305.20316 * 4 2 1 35 35 H 1.08005 * 120.85845 * 359.97438 * 9 8 6 36 36 H 1.08005 * 120.34870 * 180.02562 * 10 9 8 37 37 H 1.09001 * 109.46988 * 180.02562 * 12 11 10 38 38 H 1.08003 * 119.71809 * 180.27645 * 16 15 11 39 39 H 1.09004 * 109.58884 * 65.92613 * 17 5 4 40 40 H 1.08999 * 109.59164 * 186.35601 * 17 5 4 41 41 H 1.09003 * 109.63068 * 294.86447 * 18 17 5 42 42 H 1.08996 * 109.43099 * 174.72876 * 18 17 5 43 43 H 0.97001 * 120.00076 * 335.00407 * 21 19 2 44 44 H 0.97003 * 119.99588 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0413 -0.7235 -1.2497 5 7 3.5046 -0.8288 -1.1698 6 6 4.2811 -0.3859 -2.1784 7 8 3.7807 0.2001 -3.1185 8 6 5.7408 -0.6179 -2.1442 9 6 6.2567 -1.8444 -1.7081 10 6 7.6301 -2.0108 -1.6958 11 6 8.4421 -0.9705 -2.1111 12 6 9.9386 -1.1478 -2.0985 13 9 10.3652 -1.4185 -0.7940 14 9 10.2889 -2.2135 -2.9344 15 7 7.9278 0.1745 -2.5171 16 6 6.6274 0.3795 -2.5515 17 6 4.1051 -1.4318 0.0279 18 6 3.5708 -0.6954 1.2658 19 6 2.0408 -0.7234 1.2482 20 1 1.6967 -1.7576 1.2349 21 7 1.5266 -0.0536 2.4453 22 6 1.3965 -0.7502 3.6171 23 1 1.6734 -1.7932 3.6588 24 6 0.9087 -0.1156 4.7512 25 7 0.5708 1.1555 4.7002 26 14 0.7306 -1.0661 6.3495 27 1 2.0585 -1.5811 6.7697 28 1 0.1919 -0.1678 7.4022 29 1 -0.2007 -2.2049 6.1470 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5148 0.8894 32 1 -0.3633 0.5128 -0.8905 33 1 1.7638 -0.1574 -2.1389 34 1 1.6053 -1.7213 -1.2984 35 1 5.5994 -2.6400 -1.3896 36 1 8.0639 -2.9434 -1.3661 37 1 10.4157 -0.2346 -2.4543 38 1 6.2440 1.3292 -2.8944 39 1 3.8339 -2.4862 0.0814 40 1 5.1896 -1.3332 -0.0178 41 1 3.9159 0.3385 1.2542 42 1 3.9335 -1.1902 2.1667 43 1 1.2782 0.8834 2.4079 44 1 0.2296 1.5987 5.4927 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036066602.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:37:02 Heat of formation + Delta-G solvation = -101.860653 kcal Electronic energy + Delta-G solvation = -29378.523272 eV Core-core repulsion = 24966.108961 eV Total energy + Delta-G solvation = -4412.414311 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -50.10749 -48.09608 -42.10004 -40.67745 -39.00283 -36.31329 -34.90530 -33.73247 -33.25481 -32.98437 -31.06247 -28.73250 -27.51278 -26.63178 -24.94816 -24.82437 -23.58859 -23.09967 -21.52868 -20.64297 -19.08133 -18.95346 -18.79194 -18.37865 -18.31892 -17.46059 -17.14742 -16.76342 -16.21243 -15.87328 -15.73926 -15.57710 -15.42981 -15.18791 -14.94025 -14.78958 -14.66979 -14.46249 -14.43383 -14.23730 -13.95095 -13.63863 -13.50391 -13.16450 -12.97629 -12.81964 -12.74678 -12.48177 -12.38686 -12.20148 -12.10568 -11.84493 -11.68157 -11.42059 -11.16357 -11.09942 -10.87155 -10.71331 -10.49782 -9.76748 -8.96025 -7.90551 -5.18156 -0.69207 -0.04416 1.42807 1.49401 1.51141 1.56999 1.77824 2.18422 2.39670 2.58605 3.09828 3.19915 3.29025 3.42943 3.57527 3.66916 3.77752 3.79243 3.85645 3.93339 3.98574 4.05666 4.08163 4.27478 4.35882 4.45655 4.49023 4.63859 4.64390 4.75264 4.77043 4.79283 4.81675 4.94398 5.00805 5.15912 5.22691 5.30657 5.39795 5.48736 5.56002 5.61424 6.20719 6.30844 6.46957 6.89566 7.37373 8.13922 8.36242 9.32876 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.013549 B = 0.002722 C = 0.002375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2066.053293 B =10284.039067 C =11785.802849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.101 4.101 3 H 0.050 0.950 4 C 0.127 3.873 5 N -0.595 5.595 6 C 0.564 3.436 7 O -0.568 6.568 8 C -0.167 4.167 9 C -0.034 4.034 10 C -0.135 4.135 11 C 0.055 3.945 12 C 0.327 3.673 13 F -0.197 7.197 14 F -0.196 7.196 15 N -0.470 5.470 16 C 0.146 3.854 17 C 0.106 3.894 18 C -0.144 4.144 19 C 0.179 3.821 20 H 0.054 0.946 21 N -0.732 5.732 22 C -0.230 4.230 23 H 0.080 0.920 24 C -0.077 4.077 25 N -0.972 5.972 26 Si 0.967 3.033 27 H -0.278 1.278 28 H -0.303 1.303 29 H -0.278 1.278 30 H 0.061 0.939 31 H 0.038 0.962 32 H 0.064 0.936 33 H 0.088 0.912 34 H 0.094 0.906 35 H 0.177 0.823 36 H 0.173 0.827 37 H 0.156 0.844 38 H 0.174 0.826 39 H 0.103 0.897 40 H 0.099 0.901 41 H 0.040 0.960 42 H 0.068 0.932 43 H 0.370 0.630 44 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.702 -8.802 -16.373 24.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.121 4.121 3 H 0.069 0.931 4 C 0.004 3.996 5 N -0.326 5.326 6 C 0.352 3.648 7 O -0.448 6.448 8 C -0.172 4.172 9 C -0.060 4.060 10 C -0.155 4.155 11 C -0.084 4.084 12 C 0.273 3.727 13 F -0.178 7.178 14 F -0.177 7.177 15 N -0.179 5.179 16 C -0.013 4.013 17 C -0.016 4.016 18 C -0.185 4.185 19 C 0.071 3.929 20 H 0.072 0.928 21 N -0.371 5.371 22 C -0.362 4.362 23 H 0.098 0.902 24 C -0.269 4.269 25 N -0.623 5.623 26 Si 0.797 3.203 27 H -0.204 1.204 28 H -0.229 1.229 29 H -0.204 1.204 30 H 0.080 0.920 31 H 0.058 0.942 32 H 0.083 0.917 33 H 0.106 0.894 34 H 0.112 0.888 35 H 0.195 0.805 36 H 0.191 0.809 37 H 0.173 0.827 38 H 0.191 0.809 39 H 0.121 0.879 40 H 0.117 0.883 41 H 0.059 0.941 42 H 0.087 0.913 43 H 0.201 0.799 44 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 16.011 -8.028 -16.973 24.676 hybrid contribution -1.017 -0.216 1.617 1.923 sum 14.994 -8.244 -15.356 22.991 Atomic orbital electron populations 1.21575 0.93860 1.02180 1.01183 1.21616 0.96757 0.99078 0.94659 0.93139 1.21709 0.78031 1.01931 0.97883 1.48115 1.07247 1.59314 1.17912 1.18276 0.86257 0.78098 0.82178 1.90783 1.75334 1.42829 1.35836 1.21018 0.94019 0.97869 1.04274 1.22196 0.95875 0.96117 0.91826 1.22179 0.93660 1.00964 0.98680 1.22045 0.97025 0.91305 0.97996 1.20257 0.88789 0.89815 0.73875 1.93039 1.90637 1.95213 1.38944 1.93031 1.92704 1.60493 1.71513 1.67313 1.14623 1.22070 1.13894 1.22955 0.86879 0.99095 0.92359 1.22336 0.98823 0.98190 0.82257 1.22579 0.98604 0.99814 0.97491 1.20446 0.91472 0.95589 0.85420 0.92804 1.42604 1.76848 1.10875 1.06780 1.19570 1.33697 0.94477 0.88445 0.90237 1.25490 1.03235 0.96884 1.01322 1.69816 1.51989 1.11199 1.29297 0.85301 0.77909 0.77365 0.79728 1.20409 1.22926 1.20426 0.92014 0.94245 0.91703 0.89402 0.88797 0.80523 0.80908 0.82695 0.80877 0.87911 0.88268 0.94148 0.91307 0.79891 0.94331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.94 9.02 71.98 0.65 -3.29 16 2 C -0.10 -3.06 2.46 -10.72 -0.03 -3.09 16 3 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 4 C 0.13 3.09 5.72 86.36 0.49 3.58 16 5 N -0.60 -13.76 2.97 -821.49 -2.44 -16.19 16 6 C 0.56 14.08 7.33 86.78 0.64 14.71 16 7 O -0.57 -17.97 16.37 -3.88 -0.06 -18.03 16 8 C -0.17 -3.35 5.10 -19.99 -0.10 -3.46 16 9 C -0.03 -0.49 7.53 22.73 0.17 -0.32 16 10 C -0.14 -1.85 9.60 22.33 0.21 -1.63 16 11 C 0.05 0.91 6.28 42.57 0.27 1.18 16 12 C 0.33 4.39 5.54 71.24 0.39 4.78 16 13 F -0.20 -3.15 17.25 44.97 0.78 -2.37 16 14 F -0.20 -2.96 17.25 44.97 0.78 -2.19 16 15 N -0.47 -9.27 10.23 -182.82 -1.87 -11.14 16 16 C 0.15 3.01 10.82 85.02 0.92 3.93 16 17 C 0.11 2.14 4.98 86.51 0.43 2.57 16 18 C -0.14 -4.31 5.67 30.82 0.17 -4.14 16 19 C 0.18 6.20 2.19 45.02 0.10 6.30 16 20 H 0.05 1.83 8.08 -2.39 -0.02 1.81 16 21 N -0.73 -34.27 4.41 -322.82 -1.42 -35.70 16 22 C -0.23 -11.93 9.93 84.03 0.83 -11.10 16 23 H 0.08 3.88 7.83 -2.91 -0.02 3.86 16 24 C -0.08 -4.28 5.50 84.86 0.47 -3.81 16 25 N -0.97 -58.35 13.06 21.65 0.28 -58.06 16 26 Si 0.97 44.67 29.55 68.60 2.03 46.70 16 27 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 28 H -0.30 -14.41 7.11 99.48 0.71 -13.70 16 29 H -0.28 -12.32 7.11 99.48 0.71 -11.62 16 30 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 31 H 0.04 1.47 7.36 -2.39 -0.02 1.46 16 32 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 33 H 0.09 2.27 7.00 -2.38 -0.02 2.26 16 34 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 35 H 0.18 1.62 6.74 -2.91 -0.02 1.60 16 36 H 0.17 1.50 8.06 -2.91 -0.02 1.48 16 37 H 0.16 1.39 8.10 -2.39 -0.02 1.37 16 38 H 0.17 3.43 8.06 -2.91 -0.02 3.41 16 39 H 0.10 1.55 8.14 -2.38 -0.02 1.53 16 40 H 0.10 1.68 4.78 -2.39 -0.01 1.66 16 41 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 42 H 0.07 2.19 8.14 -2.39 -0.02 2.18 16 43 H 0.37 19.31 7.50 -92.71 -0.70 18.61 16 44 H 0.25 14.63 8.31 -92.71 -0.77 13.86 16 Total: -1.00 -68.34 368.89 4.04 -64.30 By element: Atomic # 1 Polarization: 26.12 SS G_CDS: 0.34 Total: 26.47 kcal Atomic # 6 Polarization: 0.60 SS G_CDS: 5.62 Total: 6.22 kcal Atomic # 7 Polarization: -115.65 SS G_CDS: -5.45 Total: -121.10 kcal Atomic # 8 Polarization: -17.97 SS G_CDS: -0.06 Total: -18.03 kcal Atomic # 9 Polarization: -6.11 SS G_CDS: 1.55 Total: -4.56 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 2.03 Total: 46.70 kcal Total: -68.34 4.04 -64.30 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036066602.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.562 kcal (2) G-P(sol) polarization free energy of solvation -68.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.298 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds