Wall clock time and date at job start Wed Apr 1 2020 00:37:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09005 * 109.52412 * 2 1 4 4 C 1.53194 * 109.49860 * 120.07896 * 2 1 3 5 5 N 1.46924 * 108.89321 * 174.65858 * 4 2 1 6 6 C 1.34781 * 120.62729 * 126.29990 * 5 4 2 7 7 O 1.21548 * 120.00042 * 354.13100 * 6 5 4 8 8 C 1.47841 * 119.99745 * 174.13451 * 6 5 4 9 9 C 1.40026 * 120.55934 * 309.09474 * 8 6 5 10 10 C 1.38358 * 118.28733 * 179.73314 * 9 8 6 11 11 C 1.38352 * 119.30406 * 0.54155 * 10 9 8 12 12 N 1.31927 * 121.07752 * 359.71951 * 11 10 9 13 13 C 1.31697 * 121.88117 * 359.97438 * 12 11 10 14 14 C 1.50697 * 119.71480 * 179.97438 * 13 12 11 15 15 F 1.39902 * 109.47520 * 19.85484 * 14 13 12 16 16 F 1.39905 * 109.46938 * 139.85367 * 14 13 12 17 17 C 1.46917 * 118.74094 * 306.32274 * 5 4 2 18 18 C 1.53192 * 108.77804 * 53.60609 * 17 5 4 19 19 C 1.53040 * 109.31065 * 305.36861 * 18 17 5 20 20 H 1.09011 * 109.45622 * 181.36944 * 19 18 17 21 21 N 1.46498 * 109.46072 * 301.34042 * 19 18 17 22 22 C 1.36938 * 119.99946 * 275.00424 * 21 19 18 23 23 H 1.07995 * 120.00444 * 359.97438 * 22 21 19 24 24 C 1.38820 * 119.99855 * 180.02562 * 22 21 19 25 25 N 1.31620 * 119.99708 * 359.97438 * 24 22 21 26 26 Si 1.86795 * 119.99847 * 179.97438 * 24 22 21 27 27 H 1.48501 * 109.47320 * 59.99969 * 26 24 22 28 28 H 1.48504 * 109.46983 * 179.97438 * 26 24 22 29 29 H 1.48492 * 109.47258 * 299.99618 * 26 24 22 30 30 H 1.08999 * 109.47274 * 299.91925 * 1 2 3 31 31 H 1.09002 * 109.47196 * 59.91881 * 1 2 3 32 32 H 1.09004 * 109.46906 * 179.91744 * 1 2 3 33 33 H 1.08994 * 109.58579 * 54.79986 * 4 2 1 34 34 H 1.09001 * 109.58442 * 294.52011 * 4 2 1 35 35 H 1.08001 * 120.85149 * 359.97438 * 9 8 6 36 36 H 1.07996 * 120.34367 * 180.23543 * 10 9 8 37 37 H 1.07996 * 119.46255 * 179.69344 * 11 10 9 38 38 H 1.09002 * 109.47517 * 259.85106 * 14 13 12 39 39 H 1.09007 * 109.59092 * 173.39680 * 17 5 4 40 40 H 1.09004 * 109.58547 * 293.67885 * 17 5 4 41 41 H 1.09003 * 109.49309 * 65.31753 * 18 17 5 42 42 H 1.08997 * 109.50010 * 185.38208 * 18 17 5 43 43 H 0.96994 * 120.00129 * 95.00466 * 21 19 18 44 44 H 0.96998 * 119.99432 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0274 0.0000 4 6 2.0413 -0.7238 1.2496 5 7 3.5048 -0.8290 1.1731 6 6 4.2789 -0.3843 2.1828 7 8 3.7766 0.2050 3.1197 8 6 5.7392 -0.6132 2.1507 9 6 6.2540 -1.8941 1.9163 10 6 7.6281 -2.0539 1.8907 11 6 8.4416 -0.9559 2.1068 12 7 7.9282 0.2385 2.3307 13 6 6.6274 0.4424 2.3588 14 6 6.0938 1.8274 2.6196 15 9 7.0925 2.7700 2.3525 16 9 4.9928 2.0668 1.7902 17 6 4.1083 -1.4276 -0.0252 18 6 3.5767 -0.6973 -1.2624 19 6 2.0466 -0.7256 -1.2483 20 1 1.6659 -0.2277 -2.1402 21 7 1.5843 -2.1156 -1.2304 22 6 1.4556 -2.8095 -2.4039 23 1 1.6945 -2.3320 -3.3426 24 6 1.0170 -4.1265 -2.3870 25 7 0.7253 -4.7083 -1.2430 26 14 0.8408 -5.0728 -3.9878 27 1 2.1583 -5.1422 -4.6695 28 1 0.3602 -6.4480 -3.6996 29 1 -0.1355 -4.3809 -4.8670 30 1 -0.3634 0.5126 0.8907 31 1 -0.3634 0.5151 -0.8893 32 1 -0.3633 -1.0277 -0.0015 33 1 1.6053 -1.7215 1.2981 34 1 1.7615 -0.1592 2.1390 35 1 5.5954 -2.7349 1.7556 36 1 8.0610 -3.0265 1.7088 37 1 9.5145 -1.0787 2.0923 38 1 5.7874 1.9083 3.6625 39 1 5.1926 -1.3254 0.0217 40 1 3.8429 -2.4835 -0.0794 41 1 3.9216 0.3366 -1.2507 42 1 3.9419 -1.1925 -2.1622 43 1 1.3693 -2.5444 -0.3874 44 1 0.4192 -5.6286 -1.2312 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036111297.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:37:07 Heat of formation + Delta-G solvation = -96.858961 kcal Electronic energy + Delta-G solvation = -31007.896475 eV Core-core repulsion = 26595.699054 eV Total energy + Delta-G solvation = -4412.197421 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -50.10535 -48.12161 -42.03770 -40.66639 -39.03842 -35.97590 -34.73529 -33.73566 -33.30727 -32.92578 -30.94374 -28.44500 -27.45600 -26.76373 -25.52329 -24.84247 -23.58195 -23.06189 -21.41761 -19.90149 -19.27232 -18.83044 -18.76358 -18.54970 -18.25285 -17.46537 -17.07592 -16.56227 -16.32141 -16.02418 -15.91996 -15.59580 -15.27067 -15.01110 -14.94173 -14.82039 -14.60102 -14.43403 -14.27193 -14.14794 -14.01260 -13.64977 -13.46313 -13.04631 -12.97921 -12.82578 -12.68940 -12.52019 -12.43202 -12.15400 -12.00339 -11.93670 -11.58289 -11.33947 -11.16652 -11.02906 -10.82511 -10.67785 -10.35908 -9.67443 -8.91525 -7.87021 -5.13081 -0.51455 -0.07492 1.46259 1.51729 1.52857 1.58289 1.85743 2.24428 2.48900 2.61322 2.99743 3.11143 3.25956 3.46609 3.68351 3.79271 3.81254 3.86714 3.88940 3.98355 4.03756 4.07684 4.19588 4.28281 4.32754 4.36716 4.50732 4.59286 4.69917 4.80278 4.82506 4.91870 4.94186 5.00328 5.12901 5.17841 5.25023 5.28178 5.39273 5.46020 5.58154 5.62391 6.28068 6.34568 6.58388 6.91414 7.42951 8.17306 8.42871 9.35689 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.015301 B = 0.003645 C = 0.003235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1829.479116 B = 7679.125129 C = 8654.116809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.099 4.099 3 H 0.079 0.921 4 C 0.125 3.875 5 N -0.588 5.588 6 C 0.563 3.437 7 O -0.565 6.565 8 C -0.159 4.159 9 C -0.049 4.049 10 C -0.138 4.138 11 C 0.121 3.879 12 N -0.477 5.477 13 C 0.080 3.920 14 C 0.322 3.678 15 F -0.193 7.193 16 F -0.199 7.199 17 C 0.122 3.878 18 C -0.143 4.143 19 C 0.175 3.825 20 H 0.046 0.954 21 N -0.722 5.722 22 C -0.229 4.229 23 H 0.073 0.927 24 C -0.067 4.067 25 N -0.966 5.966 26 Si 0.961 3.039 27 H -0.280 1.280 28 H -0.301 1.301 29 H -0.285 1.285 30 H 0.065 0.935 31 H 0.058 0.942 32 H 0.043 0.957 33 H 0.060 0.940 34 H 0.087 0.913 35 H 0.155 0.845 36 H 0.189 0.811 37 H 0.207 0.793 38 H 0.148 0.852 39 H 0.088 0.912 40 H 0.067 0.933 41 H 0.064 0.936 42 H 0.069 0.931 43 H 0.375 0.625 44 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.818 7.912 7.370 18.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.119 4.119 3 H 0.097 0.903 4 C 0.003 3.997 5 N -0.318 5.318 6 C 0.350 3.650 7 O -0.446 6.446 8 C -0.164 4.164 9 C -0.075 4.075 10 C -0.157 4.157 11 C -0.037 4.037 12 N -0.186 5.186 13 C -0.059 4.059 14 C 0.268 3.732 15 F -0.174 7.174 16 F -0.180 7.180 17 C 0.000 4.000 18 C -0.183 4.183 19 C 0.066 3.934 20 H 0.064 0.936 21 N -0.363 5.363 22 C -0.361 4.361 23 H 0.090 0.910 24 C -0.259 4.259 25 N -0.617 5.617 26 Si 0.792 3.208 27 H -0.206 1.206 28 H -0.228 1.228 29 H -0.212 1.212 30 H 0.084 0.916 31 H 0.077 0.923 32 H 0.062 0.938 33 H 0.079 0.921 34 H 0.105 0.895 35 H 0.173 0.827 36 H 0.207 0.793 37 H 0.224 0.776 38 H 0.165 0.835 39 H 0.107 0.893 40 H 0.085 0.915 41 H 0.082 0.918 42 H 0.088 0.912 43 H 0.209 0.791 44 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 15.083 8.918 7.766 19.166 hybrid contribution -1.156 -1.558 -0.905 2.140 sum 13.927 7.360 6.862 17.182 Atomic orbital electron populations 1.21585 0.93742 1.01679 1.01796 1.21672 0.96772 0.99119 0.94350 0.90251 1.21568 0.78384 1.00670 0.99091 1.47988 1.07009 1.59019 1.17831 1.18291 0.86336 0.78094 0.82232 1.90730 1.75200 1.42878 1.35783 1.20565 0.93558 0.96497 1.05790 1.22090 0.97600 0.95193 0.92584 1.22704 0.92411 1.02861 0.97731 1.23724 1.02955 0.85941 0.91033 1.67417 1.11408 1.27068 1.12701 1.21602 0.90549 0.94643 0.99148 1.20321 0.74590 0.82586 0.95747 1.92997 1.62107 1.66686 1.95631 1.93022 1.54606 1.94730 1.75658 1.21734 0.97482 0.97511 0.83296 1.22389 0.98781 0.99722 0.97435 1.20439 0.91858 0.85387 0.95749 0.93622 1.42525 1.79076 1.08999 1.05691 1.19501 1.35102 0.93882 0.87643 0.90956 1.25312 1.03379 0.98293 0.98934 1.69780 1.53623 1.12912 1.25361 0.85400 0.77784 0.77451 0.80208 1.20595 1.22797 1.21158 0.91614 0.92334 0.93781 0.92144 0.89487 0.82702 0.79338 0.77599 0.83488 0.89340 0.91467 0.91761 0.91224 0.79095 0.94338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.07 9.07 71.98 0.65 -3.42 16 2 C -0.10 -3.18 2.68 -10.61 -0.03 -3.21 16 3 H 0.08 2.41 8.14 -2.38 -0.02 2.39 16 4 C 0.13 4.12 5.42 86.36 0.47 4.59 16 5 N -0.59 -18.36 2.97 -822.33 -2.45 -20.80 16 6 C 0.56 17.51 5.50 86.78 0.48 17.99 16 7 O -0.57 -20.14 14.93 -3.87 -0.06 -20.20 16 8 C -0.16 -4.06 4.69 -19.99 -0.09 -4.15 16 9 C -0.05 -0.94 7.80 22.73 0.18 -0.76 16 10 C -0.14 -1.75 10.10 22.33 0.23 -1.52 16 11 C 0.12 1.71 11.17 84.71 0.95 2.66 16 12 N -0.48 -10.59 9.83 -182.85 -1.80 -12.39 16 13 C 0.08 2.02 6.61 42.89 0.28 2.31 16 14 C 0.32 8.41 4.83 71.24 0.34 8.75 16 15 F -0.19 -5.19 16.96 44.97 0.76 -4.43 16 16 F -0.20 -6.10 14.72 44.97 0.66 -5.44 16 17 C 0.12 3.66 5.19 86.36 0.45 4.11 16 18 C -0.14 -4.55 5.78 30.67 0.18 -4.37 16 19 C 0.17 6.31 2.54 45.12 0.11 6.43 16 20 H 0.05 1.72 8.08 -2.38 -0.02 1.70 16 21 N -0.72 -32.28 3.65 -322.32 -1.18 -33.46 16 22 C -0.23 -11.61 9.93 84.04 0.83 -10.78 16 23 H 0.07 3.56 7.83 -2.91 -0.02 3.54 16 24 C -0.07 -3.56 5.50 84.86 0.47 -3.10 16 25 N -0.97 -55.34 13.06 21.65 0.28 -55.05 16 26 Si 0.96 43.88 29.55 68.60 2.03 45.90 16 27 H -0.28 -12.28 7.11 99.48 0.71 -11.58 16 28 H -0.30 -14.12 7.11 99.48 0.71 -13.41 16 29 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 30 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 31 H 0.06 1.75 8.14 -2.39 -0.02 1.74 16 32 H 0.04 1.62 7.55 -2.38 -0.02 1.60 16 33 H 0.06 2.21 6.64 -2.39 -0.02 2.20 16 34 H 0.09 2.86 7.00 -2.39 -0.02 2.85 16 35 H 0.16 2.85 7.60 -2.91 -0.02 2.83 16 36 H 0.19 0.92 8.06 -2.91 -0.02 0.89 16 37 H 0.21 1.21 8.06 -2.91 -0.02 1.18 16 38 H 0.15 3.29 8.14 -2.39 -0.02 3.27 16 39 H 0.09 2.27 5.27 -2.38 -0.01 2.26 16 40 H 0.07 2.33 7.74 -2.39 -0.02 2.31 16 41 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 42 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 43 H 0.38 18.17 5.93 -92.71 -0.55 17.62 16 44 H 0.25 14.05 8.31 -92.71 -0.77 13.28 16 Total: -1.00 -66.10 360.71 4.24 -61.85 By element: Atomic # 1 Polarization: 28.00 SS G_CDS: 0.49 Total: 28.49 kcal Atomic # 6 Polarization: 10.03 SS G_CDS: 5.49 Total: 15.52 kcal Atomic # 7 Polarization: -116.56 SS G_CDS: -5.14 Total: -121.70 kcal Atomic # 8 Polarization: -20.14 SS G_CDS: -0.06 Total: -20.20 kcal Atomic # 9 Polarization: -11.30 SS G_CDS: 1.42 Total: -9.87 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.90 kcal Total: -66.10 4.24 -61.85 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036111297.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.004 kcal (2) G-P(sol) polarization free energy of solvation -66.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.855 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds