Wall clock time and date at job start Wed Apr 1 2020 00:37:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.49816 * 2 1 4 4 C 1.53196 * 109.49663 * 120.06334 * 2 1 3 5 5 N 1.46921 * 108.77655 * 174.59014 * 4 2 1 6 6 C 1.34779 * 120.63658 * 126.38814 * 5 4 2 7 7 O 1.21556 * 119.99548 * 355.43566 * 6 5 4 8 8 C 1.47833 * 120.00302 * 175.43441 * 6 5 4 9 9 C 1.40027 * 120.56192 * 321.14581 * 8 6 5 10 10 C 1.38356 * 118.28928 * 179.97438 * 9 8 6 11 11 C 1.38349 * 119.30153 * 359.97438 * 10 9 8 12 12 N 1.31929 * 121.08525 * 0.02562 * 11 10 9 13 13 C 1.31698 * 121.87359 * 359.67925 * 12 11 10 14 14 C 1.50694 * 119.71307 * 180.29162 * 13 12 11 15 15 F 1.39900 * 109.47101 * 120.29069 * 14 13 12 16 16 F 1.39900 * 109.47137 * 240.28735 * 14 13 12 17 17 C 1.46928 * 118.73784 * 306.38727 * 5 4 2 18 18 C 1.53200 * 108.77437 * 53.60985 * 17 5 4 19 19 C 1.53040 * 109.31128 * 305.36422 * 18 17 5 20 20 H 1.08994 * 109.46217 * 301.34675 * 19 18 17 21 21 N 1.46492 * 109.46083 * 181.38322 * 19 18 17 22 22 C 1.36940 * 120.00038 * 84.93298 * 21 19 18 23 23 H 1.08009 * 119.99806 * 0.02562 * 22 21 19 24 24 C 1.38812 * 120.00433 * 180.02562 * 22 21 19 25 25 N 1.31613 * 119.99959 * 359.97438 * 24 22 21 26 26 Si 1.86802 * 120.00182 * 179.97438 * 24 22 21 27 27 H 1.48506 * 109.46805 * 60.00070 * 26 24 22 28 28 H 1.48496 * 109.47180 * 179.97438 * 26 24 22 29 29 H 1.48495 * 109.47016 * 300.00259 * 26 24 22 30 30 H 1.09001 * 109.47428 * 299.93800 * 1 2 3 31 31 H 1.08999 * 109.47312 * 59.94298 * 1 2 3 32 32 H 1.09008 * 109.47151 * 179.97438 * 1 2 3 33 33 H 1.09007 * 109.58539 * 294.37381 * 4 2 1 34 34 H 1.08995 * 109.58886 * 54.79478 * 4 2 1 35 35 H 1.08001 * 120.85345 * 359.97438 * 9 8 6 36 36 H 1.08001 * 120.34821 * 180.02562 * 10 9 8 37 37 H 1.08007 * 119.46093 * 180.02562 * 11 10 9 38 38 H 1.09001 * 109.47631 * 0.29307 * 14 13 12 39 39 H 1.08997 * 109.58642 * 293.82376 * 17 5 4 40 40 H 1.09001 * 109.70613 * 173.46685 * 17 5 4 41 41 H 1.08998 * 109.49421 * 185.41215 * 18 17 5 42 42 H 1.08993 * 109.49624 * 65.31790 * 18 17 5 43 43 H 0.97001 * 120.00869 * 264.93950 * 21 19 18 44 44 H 0.96997 * 120.00099 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0412 -0.7234 1.2498 5 7 3.5045 -0.8287 1.1700 6 6 4.2811 -0.3853 2.1783 7 8 3.7781 0.1822 3.1284 8 6 5.7445 -0.5890 2.1290 9 6 6.2808 -1.7822 1.6297 10 6 7.6570 -1.9227 1.6047 11 6 8.4516 -0.8896 2.0687 12 7 7.9183 0.2239 2.5337 13 6 6.6147 0.4072 2.5727 14 6 6.0581 1.7013 3.1079 15 9 5.2993 2.3289 2.1141 16 9 5.2470 1.4370 4.2166 17 6 4.1053 -1.4267 -0.0302 18 6 3.5708 -0.6954 -1.2657 19 6 2.0408 -0.7236 -1.2481 20 1 1.6967 -1.7577 -1.2347 21 7 1.5265 -0.0538 -2.4452 22 6 1.3964 -0.7505 -3.6169 23 1 1.6726 -1.7938 -3.6584 24 6 0.9096 -0.1158 -4.7514 25 7 0.5726 1.1555 -4.7008 26 14 0.7329 -1.0660 -6.3500 27 1 -0.1986 -2.2048 -6.1485 28 1 0.1950 -0.1676 -7.4030 29 1 2.0611 -1.5810 -6.7691 30 1 -0.3634 0.5129 0.8905 31 1 -0.3634 0.5147 -0.8895 32 1 -0.3634 -1.0277 -0.0005 33 1 1.7637 -0.1572 2.1390 34 1 1.6052 -1.7212 1.2987 35 1 5.6367 -2.5726 1.2734 36 1 8.1062 -2.8290 1.2262 37 1 9.5262 -0.9963 2.0500 38 1 6.8785 2.3544 3.4052 39 1 3.8375 -2.4818 -0.0858 40 1 5.1898 -1.3267 0.0130 41 1 3.9335 -1.1904 -2.1666 42 1 3.9159 0.3384 -1.2541 43 1 1.2782 0.8831 -2.4080 44 1 0.2321 1.5989 -5.4935 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036111298.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:37:13 Heat of formation + Delta-G solvation = -73.284274 kcal Electronic energy + Delta-G solvation = -30675.024608 eV Core-core repulsion = 26263.849462 eV Total energy + Delta-G solvation = -4411.175146 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -48.92325 -46.88790 -41.15330 -39.59385 -37.64107 -34.86117 -33.55640 -32.79284 -32.18395 -31.49802 -29.38255 -27.45699 -26.28434 -25.50502 -24.32946 -22.79102 -22.72621 -21.68071 -20.32075 -19.35713 -18.02678 -17.81120 -17.33730 -17.16863 -17.07605 -16.47027 -15.85747 -15.58726 -15.09325 -14.90767 -14.37428 -14.21725 -14.04725 -13.90553 -13.73240 -13.57349 -13.36452 -13.31417 -13.22792 -12.91788 -12.47082 -12.43488 -12.22777 -11.82729 -11.62022 -11.50036 -11.20434 -10.96012 -10.84265 -10.70749 -10.45221 -10.29154 -10.25064 -10.21314 -9.83156 -9.76447 -9.64285 -9.60021 -8.92396 -8.54869 -6.99260 -5.79652 -3.08727 0.21755 0.59654 2.56575 2.86942 3.10487 3.26085 3.40310 3.45015 3.46479 3.96188 4.06999 4.18681 4.30843 4.50787 4.55056 4.74362 4.87068 4.91189 4.97905 4.98431 5.22401 5.24162 5.27680 5.43518 5.47019 5.50728 5.52812 5.65668 5.73960 5.92705 5.96513 6.05908 6.10400 6.26795 6.33591 6.41146 6.48868 6.60131 6.77059 6.90210 7.02370 7.24746 7.37197 7.64848 8.06428 8.38359 9.49692 10.07205 10.42089 11.42699 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.015669 B = 0.003235 C = 0.002993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1786.593316 B = 8653.627201 C = 9351.664714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.111 4.111 3 H 0.071 0.929 4 C 0.122 3.878 5 N -0.595 5.595 6 C 0.552 3.448 7 O -0.513 6.513 8 C -0.137 4.137 9 C -0.048 4.048 10 C -0.158 4.158 11 C 0.117 3.883 12 N -0.462 5.462 13 C 0.096 3.904 14 C 0.324 3.676 15 F -0.189 7.189 16 F -0.170 7.170 17 C 0.096 3.904 18 C -0.152 4.152 19 C 0.185 3.815 20 H 0.048 0.952 21 N -0.720 5.720 22 C -0.241 4.241 23 H 0.069 0.931 24 C -0.011 4.011 25 N -0.931 5.931 26 Si 0.905 3.095 27 H -0.286 1.286 28 H -0.291 1.291 29 H -0.287 1.287 30 H 0.044 0.956 31 H 0.074 0.926 32 H 0.050 0.950 33 H 0.091 0.909 34 H 0.069 0.931 35 H 0.153 0.847 36 H 0.150 0.850 37 H 0.169 0.831 38 H 0.127 0.873 39 H 0.071 0.929 40 H 0.079 0.921 41 H 0.077 0.923 42 H 0.060 0.940 43 H 0.384 0.616 44 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.665 -6.269 15.602 22.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.131 4.131 3 H 0.089 0.911 4 C 0.000 4.000 5 N -0.327 5.327 6 C 0.338 3.662 7 O -0.390 6.390 8 C -0.142 4.142 9 C -0.074 4.074 10 C -0.178 4.178 11 C -0.040 4.040 12 N -0.170 5.170 13 C -0.044 4.044 14 C 0.269 3.731 15 F -0.170 7.170 16 F -0.151 7.151 17 C -0.027 4.027 18 C -0.193 4.193 19 C 0.074 3.926 20 H 0.066 0.934 21 N -0.360 5.360 22 C -0.372 4.372 23 H 0.087 0.913 24 C -0.207 4.207 25 N -0.579 5.579 26 Si 0.736 3.264 27 H -0.213 1.213 28 H -0.217 1.217 29 H -0.213 1.213 30 H 0.063 0.937 31 H 0.093 0.907 32 H 0.069 0.931 33 H 0.109 0.891 34 H 0.087 0.913 35 H 0.170 0.830 36 H 0.168 0.832 37 H 0.187 0.813 38 H 0.144 0.856 39 H 0.089 0.911 40 H 0.097 0.903 41 H 0.095 0.905 42 H 0.079 0.921 43 H 0.218 0.782 44 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 14.842 -5.395 16.253 22.662 hybrid contribution -0.622 -0.977 -1.523 1.914 sum 14.220 -6.373 14.730 21.442 Atomic orbital electron populations 1.21653 0.93981 1.01746 1.01941 1.21749 0.96666 1.00222 0.94423 0.91064 1.21771 0.77510 1.00965 0.99766 1.48013 1.07350 1.59897 1.17486 1.18021 0.85516 0.79392 0.83311 1.90895 1.74246 1.40659 1.33162 1.20861 0.95446 0.96298 1.01631 1.22021 0.95961 0.96320 0.93083 1.22280 0.93907 1.01153 1.00463 1.22973 1.01051 0.87750 0.92276 1.67312 1.11558 1.24036 1.14142 1.21756 0.89809 0.95753 0.97071 1.19993 0.87263 0.89646 0.76154 1.93063 1.78645 1.82807 1.62519 1.93133 1.75194 1.94714 1.52098 1.22249 0.97907 0.97454 0.85115 1.22708 1.00591 1.00525 0.95501 1.20181 0.90174 0.95683 0.86530 0.93406 1.42399 1.76428 1.11467 1.05720 1.19162 1.36242 0.94050 0.87741 0.91317 1.24725 1.01978 0.95988 0.98017 1.69645 1.49748 1.09495 1.29022 0.86306 0.77710 0.78734 0.83631 1.21296 1.21726 1.21347 0.93741 0.90709 0.93065 0.89054 0.91298 0.82965 0.83234 0.81341 0.85629 0.91108 0.90261 0.90482 0.92072 0.78153 0.93426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.20 9.02 37.15 0.34 -1.87 16 2 C -0.11 -1.83 2.46 -90.50 -0.22 -2.06 16 3 H 0.07 1.31 8.14 -51.93 -0.42 0.88 16 4 C 0.12 1.77 5.72 -3.71 -0.02 1.75 16 5 N -0.60 -8.42 2.97 -173.88 -0.52 -8.93 16 6 C 0.55 8.35 6.50 -12.33 -0.08 8.27 16 7 O -0.51 -9.21 12.62 5.32 0.07 -9.14 16 8 C -0.14 -1.73 5.18 -104.82 -0.54 -2.28 16 9 C -0.05 -0.43 7.48 -38.87 -0.29 -0.72 16 10 C -0.16 -1.07 10.10 -39.50 -0.40 -1.47 16 11 C 0.12 0.89 11.17 -17.47 -0.20 0.70 16 12 N -0.46 -4.99 10.24 -9.14 -0.09 -5.09 16 13 C 0.10 1.22 6.31 -82.17 -0.52 0.70 16 14 C 0.32 4.25 5.03 36.00 0.18 4.43 16 15 F -0.19 -2.95 16.33 2.25 0.04 -2.91 16 16 F -0.17 -2.62 14.31 2.25 0.03 -2.59 16 17 C 0.10 1.21 4.90 -3.71 -0.02 1.19 16 18 C -0.15 -2.51 5.66 -26.61 -0.15 -2.66 16 19 C 0.18 3.44 2.19 -67.89 -0.15 3.29 16 20 H 0.05 0.90 8.08 -51.93 -0.42 0.48 16 21 N -0.72 -17.14 4.41 -53.39 -0.24 -17.38 16 22 C -0.24 -6.37 9.93 -15.06 -0.15 -6.52 16 23 H 0.07 1.75 7.83 -52.48 -0.41 1.34 16 24 C -0.01 -0.30 5.50 -17.43 -0.10 -0.40 16 25 N -0.93 -27.52 13.06 55.49 0.72 -26.80 16 26 Si 0.91 21.79 29.55 -169.99 -5.02 16.77 16 27 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 28 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 29 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 30 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.07 1.43 7.36 -51.93 -0.38 1.05 16 32 H 0.05 0.79 8.14 -51.92 -0.42 0.37 16 33 H 0.09 1.39 7.00 -51.93 -0.36 1.03 16 34 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.15 1.11 6.46 -52.49 -0.34 0.77 16 36 H 0.15 0.50 8.06 -52.49 -0.42 0.08 16 37 H 0.17 0.68 8.06 -52.48 -0.42 0.26 16 38 H 0.13 1.20 8.11 -51.93 -0.42 0.78 16 39 H 0.07 0.76 8.12 -51.93 -0.42 0.34 16 40 H 0.08 0.87 4.56 -51.93 -0.24 0.64 16 41 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 42 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 43 H 0.38 9.97 7.50 -40.82 -0.31 9.66 16 44 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 360.25 15.07 5.43 5.43 Total: -1.00 -33.09 360.25 -7.72 -40.81 By element: Atomic # 1 Polarization: 13.32 SS G_CDS: -5.82 Total: 7.50 kcal Atomic # 6 Polarization: 4.65 SS G_CDS: -2.32 Total: 2.33 kcal Atomic # 7 Polarization: -58.08 SS G_CDS: -0.12 Total: -58.20 kcal Atomic # 8 Polarization: -9.21 SS G_CDS: 0.07 Total: -9.14 kcal Atomic # 9 Polarization: -5.57 SS G_CDS: 0.07 Total: -5.50 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -33.09 -7.72 -40.81 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036111298.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.476 kcal (2) G-P(sol) polarization free energy of solvation -33.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds