Wall clock time and date at job start Wed Apr 1 2020 00:37:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.49816 * 2 1 4 4 C 1.53196 * 109.49663 * 120.06334 * 2 1 3 5 5 N 1.46921 * 108.77655 * 174.59014 * 4 2 1 6 6 C 1.34779 * 120.63658 * 126.38814 * 5 4 2 7 7 O 1.21556 * 119.99548 * 355.43566 * 6 5 4 8 8 C 1.47833 * 120.00302 * 175.43441 * 6 5 4 9 9 C 1.40027 * 120.56192 * 321.14581 * 8 6 5 10 10 C 1.38356 * 118.28928 * 179.97438 * 9 8 6 11 11 C 1.38349 * 119.30153 * 359.97438 * 10 9 8 12 12 N 1.31929 * 121.08525 * 0.02562 * 11 10 9 13 13 C 1.31698 * 121.87359 * 359.67925 * 12 11 10 14 14 C 1.50694 * 119.71307 * 180.29162 * 13 12 11 15 15 F 1.39900 * 109.47101 * 120.29069 * 14 13 12 16 16 F 1.39900 * 109.47137 * 240.28735 * 14 13 12 17 17 C 1.46928 * 118.73784 * 306.38727 * 5 4 2 18 18 C 1.53200 * 108.77437 * 53.60985 * 17 5 4 19 19 C 1.53040 * 109.31128 * 305.36422 * 18 17 5 20 20 H 1.08994 * 109.46217 * 301.34675 * 19 18 17 21 21 N 1.46492 * 109.46083 * 181.38322 * 19 18 17 22 22 C 1.36940 * 120.00038 * 84.93298 * 21 19 18 23 23 H 1.08009 * 119.99806 * 0.02562 * 22 21 19 24 24 C 1.38812 * 120.00433 * 180.02562 * 22 21 19 25 25 N 1.31613 * 119.99959 * 359.97438 * 24 22 21 26 26 Si 1.86802 * 120.00182 * 179.97438 * 24 22 21 27 27 H 1.48506 * 109.46805 * 60.00070 * 26 24 22 28 28 H 1.48496 * 109.47180 * 179.97438 * 26 24 22 29 29 H 1.48495 * 109.47016 * 300.00259 * 26 24 22 30 30 H 1.09001 * 109.47428 * 299.93800 * 1 2 3 31 31 H 1.08999 * 109.47312 * 59.94298 * 1 2 3 32 32 H 1.09008 * 109.47151 * 179.97438 * 1 2 3 33 33 H 1.09007 * 109.58539 * 294.37381 * 4 2 1 34 34 H 1.08995 * 109.58886 * 54.79478 * 4 2 1 35 35 H 1.08001 * 120.85345 * 359.97438 * 9 8 6 36 36 H 1.08001 * 120.34821 * 180.02562 * 10 9 8 37 37 H 1.08007 * 119.46093 * 180.02562 * 11 10 9 38 38 H 1.09001 * 109.47631 * 0.29307 * 14 13 12 39 39 H 1.08997 * 109.58642 * 293.82376 * 17 5 4 40 40 H 1.09001 * 109.70613 * 173.46685 * 17 5 4 41 41 H 1.08998 * 109.49421 * 185.41215 * 18 17 5 42 42 H 1.08993 * 109.49624 * 65.31790 * 18 17 5 43 43 H 0.97001 * 120.00869 * 264.93950 * 21 19 18 44 44 H 0.96997 * 120.00099 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0412 -0.7234 1.2498 5 7 3.5045 -0.8287 1.1700 6 6 4.2811 -0.3853 2.1783 7 8 3.7781 0.1822 3.1284 8 6 5.7445 -0.5890 2.1290 9 6 6.2808 -1.7822 1.6297 10 6 7.6570 -1.9227 1.6047 11 6 8.4516 -0.8896 2.0687 12 7 7.9183 0.2239 2.5337 13 6 6.6147 0.4072 2.5727 14 6 6.0581 1.7013 3.1079 15 9 5.2993 2.3289 2.1141 16 9 5.2470 1.4370 4.2166 17 6 4.1053 -1.4267 -0.0302 18 6 3.5708 -0.6954 -1.2657 19 6 2.0408 -0.7236 -1.2481 20 1 1.6967 -1.7577 -1.2347 21 7 1.5265 -0.0538 -2.4452 22 6 1.3964 -0.7505 -3.6169 23 1 1.6726 -1.7938 -3.6584 24 6 0.9096 -0.1158 -4.7514 25 7 0.5726 1.1555 -4.7008 26 14 0.7329 -1.0660 -6.3500 27 1 -0.1986 -2.2048 -6.1485 28 1 0.1950 -0.1676 -7.4030 29 1 2.0611 -1.5810 -6.7691 30 1 -0.3634 0.5129 0.8905 31 1 -0.3634 0.5147 -0.8895 32 1 -0.3634 -1.0277 -0.0005 33 1 1.7637 -0.1572 2.1390 34 1 1.6052 -1.7212 1.2987 35 1 5.6367 -2.5726 1.2734 36 1 8.1062 -2.8290 1.2262 37 1 9.5262 -0.9963 2.0500 38 1 6.8785 2.3544 3.4052 39 1 3.8375 -2.4818 -0.0858 40 1 5.1898 -1.3267 0.0130 41 1 3.9335 -1.1904 -2.1666 42 1 3.9159 0.3384 -1.2541 43 1 1.2782 0.8831 -2.4080 44 1 0.2321 1.5989 -5.4935 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036111298.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:37:12 Heat of formation + Delta-G solvation = -94.924750 kcal Electronic energy + Delta-G solvation = -30675.963010 eV Core-core repulsion = 26263.849462 eV Total energy + Delta-G solvation = -4412.113547 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 1.68 seconds Orbital eigenvalues (eV) -50.00441 -47.99470 -42.04713 -40.60376 -38.96563 -36.30870 -34.86259 -33.73642 -33.28202 -32.89688 -31.06670 -28.43961 -27.43046 -26.84886 -25.56886 -24.12707 -23.65518 -23.04990 -21.51814 -20.62267 -19.08184 -18.90573 -18.67230 -18.35885 -18.23344 -17.50036 -16.84600 -16.78422 -16.30522 -16.08979 -15.68745 -15.52305 -15.34087 -15.08191 -14.92027 -14.77781 -14.47283 -14.39651 -14.34583 -14.11934 -13.92007 -13.64373 -13.25538 -13.13991 -12.98196 -12.81516 -12.74587 -12.50012 -12.43572 -12.19638 -12.10537 -11.86308 -11.67298 -11.21666 -11.17556 -11.03003 -10.83216 -10.63780 -10.40819 -9.73228 -8.96547 -7.89878 -5.18193 -0.54105 -0.07347 1.49356 1.51823 1.52151 1.57771 1.85976 2.28308 2.49462 2.59095 3.13773 3.14337 3.33882 3.43338 3.72119 3.77022 3.78311 3.85268 3.94063 3.95587 4.03389 4.05405 4.20412 4.25589 4.34199 4.35022 4.48022 4.62548 4.73780 4.76005 4.78635 4.81578 4.92977 4.93479 4.99259 5.16283 5.27980 5.37416 5.41638 5.48272 5.55646 5.60290 6.23748 6.30830 6.57858 6.95658 7.37111 8.12947 8.36419 9.33732 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.015669 B = 0.003235 C = 0.002993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1786.593316 B = 8653.627201 C = 9351.664714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.101 4.101 3 H 0.043 0.957 4 C 0.129 3.871 5 N -0.597 5.597 6 C 0.548 3.452 7 O -0.552 6.552 8 C -0.164 4.164 9 C -0.050 4.050 10 C -0.137 4.137 11 C 0.117 3.883 12 N -0.477 5.477 13 C 0.075 3.925 14 C 0.312 3.688 15 F -0.210 7.210 16 F -0.189 7.189 17 C 0.104 3.896 18 C -0.143 4.143 19 C 0.181 3.819 20 H 0.057 0.943 21 N -0.733 5.733 22 C -0.232 4.232 23 H 0.081 0.919 24 C -0.077 4.077 25 N -0.973 5.973 26 Si 0.969 3.031 27 H -0.278 1.278 28 H -0.302 1.302 29 H -0.277 1.277 30 H 0.061 0.939 31 H 0.039 0.961 32 H 0.063 0.937 33 H 0.081 0.919 34 H 0.095 0.905 35 H 0.174 0.826 36 H 0.196 0.804 37 H 0.209 0.791 38 H 0.156 0.844 39 H 0.105 0.895 40 H 0.101 0.899 41 H 0.072 0.928 42 H 0.034 0.966 43 H 0.369 0.631 44 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.210 -9.782 15.831 25.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.121 4.121 3 H 0.062 0.938 4 C 0.006 3.994 5 N -0.328 5.328 6 C 0.336 3.664 7 O -0.431 6.431 8 C -0.170 4.170 9 C -0.076 4.076 10 C -0.156 4.156 11 C -0.040 4.040 12 N -0.186 5.186 13 C -0.064 4.064 14 C 0.258 3.742 15 F -0.192 7.192 16 F -0.170 7.170 17 C -0.018 4.018 18 C -0.184 4.184 19 C 0.072 3.928 20 H 0.075 0.925 21 N -0.372 5.372 22 C -0.364 4.364 23 H 0.099 0.901 24 C -0.269 4.269 25 N -0.624 5.624 26 Si 0.799 3.201 27 H -0.204 1.204 28 H -0.229 1.229 29 H -0.203 1.203 30 H 0.080 0.920 31 H 0.058 0.942 32 H 0.082 0.918 33 H 0.100 0.900 34 H 0.113 0.887 35 H 0.191 0.809 36 H 0.213 0.787 37 H 0.225 0.775 38 H 0.173 0.827 39 H 0.123 0.877 40 H 0.119 0.881 41 H 0.091 0.909 42 H 0.052 0.948 43 H 0.200 0.800 44 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 17.420 -8.962 16.509 25.618 hybrid contribution -1.294 0.080 -1.518 1.997 sum 16.125 -8.882 14.990 23.741 Atomic orbital electron populations 1.21563 0.93739 1.02251 1.01092 1.21614 0.96842 0.98814 0.94873 0.93805 1.21656 0.78250 1.01750 0.97712 1.48076 1.07081 1.59831 1.17836 1.18494 0.86795 0.78376 0.82767 1.90866 1.75268 1.42249 1.34688 1.20780 0.93655 0.98296 1.04253 1.22340 0.97537 0.95246 0.92492 1.22789 0.92641 1.02130 0.98030 1.23788 1.03084 0.86742 0.90361 1.67337 1.10420 1.25842 1.15019 1.21592 0.90770 0.95509 0.98489 1.20489 0.87204 0.91220 0.75329 1.93007 1.79387 1.83367 1.63419 1.93080 1.75942 1.94951 1.53003 1.22325 0.98980 0.98242 0.82222 1.22497 0.98662 0.99608 0.97654 1.20424 0.91473 0.95589 0.85289 0.92548 1.42613 1.76863 1.10850 1.06830 1.19599 1.33894 0.94518 0.88385 0.90076 1.25514 1.03112 0.96859 1.01390 1.69825 1.51973 1.11285 1.29317 0.85267 0.77957 0.77324 0.79549 1.20365 1.22922 1.20275 0.91957 0.94163 0.91779 0.90014 0.88714 0.80861 0.78690 0.77451 0.82677 0.87739 0.88070 0.90901 0.94752 0.80001 0.94327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.23 9.02 71.98 0.65 -3.58 16 2 C -0.10 -3.40 2.46 -10.72 -0.03 -3.43 16 3 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 4 C 0.13 3.61 5.72 86.36 0.49 4.11 16 5 N -0.60 -16.11 2.97 -822.30 -2.44 -18.56 16 6 C 0.55 16.37 6.50 86.78 0.56 16.94 16 7 O -0.55 -20.34 12.62 -3.89 -0.05 -20.39 16 8 C -0.16 -3.91 5.18 -19.99 -0.10 -4.02 16 9 C -0.05 -0.72 7.48 22.73 0.17 -0.55 16 10 C -0.14 -1.13 10.10 22.32 0.23 -0.90 16 11 C 0.12 1.29 11.17 84.70 0.95 2.23 16 12 N -0.48 -9.25 10.24 -182.84 -1.87 -11.12 16 13 C 0.08 1.85 6.31 42.89 0.27 2.12 16 14 C 0.31 8.39 5.03 71.23 0.36 8.75 16 15 F -0.21 -6.91 16.33 44.97 0.73 -6.18 16 16 F -0.19 -6.08 14.31 44.97 0.64 -5.43 16 17 C 0.10 2.34 4.90 86.36 0.42 2.76 16 18 C -0.14 -4.60 5.66 30.67 0.17 -4.43 16 19 C 0.18 6.65 2.19 45.02 0.10 6.75 16 20 H 0.06 2.00 8.08 -2.39 -0.02 1.98 16 21 N -0.73 -35.60 4.41 -322.82 -1.42 -37.02 16 22 C -0.23 -12.27 9.93 84.03 0.83 -11.44 16 23 H 0.08 4.01 7.83 -2.91 -0.02 3.99 16 24 C -0.08 -4.31 5.50 84.86 0.47 -3.84 16 25 N -0.97 -59.37 13.06 21.65 0.28 -59.08 16 26 Si 0.97 45.02 29.55 68.60 2.03 47.05 16 27 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 28 H -0.30 -14.47 7.11 99.48 0.71 -13.77 16 29 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 30 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 31 H 0.04 1.59 7.36 -2.39 -0.02 1.58 16 32 H 0.06 1.92 8.14 -2.38 -0.02 1.90 16 33 H 0.08 2.50 7.00 -2.38 -0.02 2.48 16 34 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 35 H 0.17 1.65 6.46 -2.91 -0.02 1.63 16 36 H 0.20 -0.13 8.06 -2.91 -0.02 -0.16 16 37 H 0.21 0.53 8.06 -2.91 -0.02 0.50 16 38 H 0.16 3.01 8.11 -2.39 -0.02 2.99 16 39 H 0.10 1.73 8.12 -2.39 -0.02 1.71 16 40 H 0.10 1.89 4.56 -2.39 -0.01 1.88 16 41 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 42 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 43 H 0.37 20.04 7.50 -92.71 -0.70 19.34 16 44 H 0.25 14.84 8.31 -92.71 -0.77 14.07 16 Total: -1.00 -76.83 360.25 3.79 -73.04 By element: Atomic # 1 Polarization: 25.88 SS G_CDS: 0.35 Total: 26.22 kcal Atomic # 6 Polarization: 5.93 SS G_CDS: 5.54 Total: 11.47 kcal Atomic # 7 Polarization: -120.32 SS G_CDS: -5.46 Total: -125.78 kcal Atomic # 8 Polarization: -20.34 SS G_CDS: -0.05 Total: -20.39 kcal Atomic # 9 Polarization: -12.99 SS G_CDS: 1.38 Total: -11.61 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 2.03 Total: 47.05 kcal Total: -76.83 3.79 -73.04 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036111298.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.887 kcal (2) G-P(sol) polarization free energy of solvation -76.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.038 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.68 seconds