Wall clock time and date at job start Wed Apr 1 2020 00:37:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09008 * 109.49916 * 2 1 4 4 C 1.53191 * 109.49925 * 239.93343 * 2 1 3 5 5 N 1.46927 * 108.77245 * 185.38200 * 4 2 1 6 6 C 1.34777 * 120.62672 * 233.58322 * 5 4 2 7 7 O 1.21552 * 120.00179 * 4.18317 * 6 5 4 8 8 C 1.47842 * 120.00036 * 184.18605 * 6 5 4 9 9 C 1.40030 * 120.55755 * 302.43745 * 8 6 5 10 10 C 1.38351 * 118.28835 * 179.75182 * 9 8 6 11 11 C 1.38349 * 119.30638 * 0.55535 * 10 9 8 12 12 N 1.31931 * 121.07859 * 359.42792 * 11 10 9 13 13 C 1.31702 * 121.87513 * 0.27665 * 12 11 10 14 14 C 1.50697 * 119.71353 * 180.02562 * 13 12 11 15 15 F 1.39902 * 109.47314 * 21.11842 * 14 13 12 16 16 F 1.39903 * 109.47109 * 141.11543 * 14 13 12 17 17 C 1.46923 * 118.74291 * 53.86110 * 5 4 2 18 18 C 1.53626 * 108.54134 * 306.09239 * 17 5 4 19 19 C 1.53039 * 109.24025 * 54.85742 * 18 17 5 20 20 H 1.09001 * 109.45755 * 178.49178 * 19 18 17 21 21 N 1.46498 * 109.46367 * 58.53068 * 19 18 17 22 22 C 1.36932 * 120.00063 * 84.93309 * 21 19 18 23 23 H 1.08006 * 120.00220 * 359.97438 * 22 21 19 24 24 C 1.38814 * 120.00185 * 180.02562 * 22 21 19 25 25 N 1.31621 * 120.00198 * 179.97438 * 24 22 21 26 26 Si 1.86799 * 119.99636 * 359.97438 * 24 22 21 27 27 H 1.48503 * 109.47255 * 90.00168 * 26 24 22 28 28 H 1.48499 * 109.46791 * 210.00053 * 26 24 22 29 29 H 1.48500 * 109.47337 * 329.99729 * 26 24 22 30 30 H 1.08998 * 109.46745 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47132 * 300.06585 * 1 2 3 32 32 H 1.09004 * 109.46906 * 60.06510 * 1 2 3 33 33 H 1.08992 * 109.58781 * 65.59654 * 4 2 1 34 34 H 1.08997 * 109.58445 * 305.16742 * 4 2 1 35 35 H 1.08006 * 120.85238 * 0.02562 * 9 8 6 36 36 H 1.08008 * 120.34916 * 180.25795 * 10 9 8 37 37 H 1.08003 * 119.46689 * 179.70851 * 11 10 9 38 38 H 1.09000 * 109.47177 * 261.11619 * 14 13 12 39 39 H 1.09001 * 109.58503 * 65.92146 * 17 5 4 40 40 H 1.09003 * 109.58754 * 186.34976 * 17 5 4 41 41 H 1.08994 * 109.63392 * 294.85961 * 18 17 5 42 42 H 1.09004 * 109.43025 * 174.71894 * 18 17 5 43 43 H 0.97001 * 119.99697 * 264.93045 * 21 19 18 44 44 H 0.96997 * 119.99932 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0276 0.0000 4 6 2.0413 -0.7235 -1.2497 5 7 3.5047 -0.8281 -1.1700 6 6 4.2807 -0.3850 -2.1789 7 8 3.7766 0.1754 -3.1325 8 6 5.7452 -0.5805 -2.1259 9 6 6.4928 -0.0739 -1.0556 10 6 7.8595 -0.2886 -1.0509 11 6 8.4401 -0.9800 -2.0992 12 7 7.7105 -1.4459 -3.0947 13 6 6.4058 -1.2724 -3.1414 14 6 5.6197 -1.8261 -4.3018 15 9 6.3509 -2.8493 -4.9146 16 9 4.4018 -2.3360 -3.8391 17 6 4.1058 -1.4305 0.0277 18 6 3.5715 -0.6941 1.2655 19 6 2.0415 -0.7229 1.2482 20 1 1.6588 -0.2246 2.1389 21 7 1.5797 -2.1131 1.2307 22 6 1.4501 -2.8064 2.4044 23 1 1.6887 -2.3284 3.3431 24 6 1.0130 -4.1238 2.3878 25 7 0.8889 -4.7903 3.5160 26 14 0.6009 -4.9506 0.7643 27 1 1.8166 -5.6080 0.2209 28 1 -0.4572 -5.9695 0.9823 29 1 0.1156 -3.9318 -0.2010 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5149 0.8894 32 1 -0.3633 0.5128 -0.8906 33 1 1.7634 -0.1577 -2.1389 34 1 1.6057 -1.7215 -1.2981 35 1 6.0141 0.4665 -0.2524 36 1 8.4676 0.0839 -0.2396 37 1 9.5075 -1.1449 -2.1004 38 1 5.4302 -1.0321 -5.0241 39 1 3.8350 -2.4850 0.0813 40 1 5.1903 -1.3314 -0.0185 41 1 3.9161 0.3399 1.2536 42 1 3.9345 -1.1887 2.1665 43 1 1.3657 -2.5425 0.3876 44 1 0.5838 -5.7110 3.5043 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036111299.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:37:18 Heat of formation + Delta-G solvation = -72.791516 kcal Electronic energy + Delta-G solvation = -31131.827304 eV Core-core repulsion = 26720.673526 eV Total energy + Delta-G solvation = -4411.153778 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -49.11090 -47.11903 -41.13708 -39.67741 -37.86680 -34.65720 -33.42236 -32.86883 -32.30043 -31.57241 -29.83518 -27.50466 -26.41763 -25.66504 -24.13636 -23.21104 -22.77324 -21.77142 -20.38784 -18.58086 -18.02736 -17.96825 -17.72682 -17.63544 -17.23430 -16.47796 -16.10158 -15.56663 -15.09135 -14.76100 -14.56636 -14.30945 -14.15955 -13.96525 -13.87556 -13.69462 -13.46844 -13.43671 -13.20908 -12.96643 -12.68728 -12.62233 -12.41342 -11.82789 -11.67214 -11.63774 -11.50180 -11.06515 -11.03221 -10.73741 -10.62144 -10.40751 -10.25626 -10.14482 -9.94563 -9.80289 -9.60592 -9.55871 -9.00730 -8.49904 -7.34323 -5.83655 -3.19400 0.29101 0.65133 2.47453 2.88144 3.07461 3.24736 3.32023 3.35348 3.42239 3.85546 3.99180 4.17587 4.36255 4.52797 4.54280 4.67339 4.85680 4.88541 4.92365 4.98870 5.06870 5.15397 5.25094 5.40109 5.48160 5.53677 5.54601 5.56061 5.68016 5.78885 5.85433 6.00106 6.01090 6.13294 6.18449 6.30749 6.37582 6.44741 6.57611 6.68270 6.77544 7.30287 7.39398 7.91856 8.00842 8.35335 9.13219 9.86033 10.05303 11.34565 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.012737 B = 0.004050 C = 0.003921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2197.737186 B = 6912.362523 C = 7139.535761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.111 4.111 3 H 0.072 0.928 4 C 0.119 3.881 5 N -0.589 5.589 6 C 0.564 3.436 7 O -0.538 6.538 8 C -0.139 4.139 9 C -0.044 4.044 10 C -0.157 4.157 11 C 0.116 3.884 12 N -0.455 5.455 13 C 0.092 3.908 14 C 0.326 3.674 15 F -0.186 7.186 16 F -0.184 7.184 17 C 0.103 3.897 18 C -0.149 4.149 19 C 0.184 3.816 20 H 0.062 0.938 21 N -0.743 5.743 22 C -0.243 4.243 23 H 0.091 0.909 24 C 0.009 3.991 25 N -0.932 5.932 26 Si 0.876 3.124 27 H -0.284 1.284 28 H -0.290 1.290 29 H -0.277 1.277 30 H 0.065 0.935 31 H 0.059 0.941 32 H 0.046 0.954 33 H 0.090 0.910 34 H 0.070 0.930 35 H 0.151 0.849 36 H 0.150 0.850 37 H 0.169 0.831 38 H 0.134 0.866 39 H 0.083 0.917 40 H 0.074 0.926 41 H 0.052 0.948 42 H 0.082 0.918 43 H 0.360 0.640 44 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.001 12.153 -10.909 20.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.131 4.131 3 H 0.091 0.909 4 C -0.003 4.003 5 N -0.319 5.319 6 C 0.350 3.650 7 O -0.417 6.417 8 C -0.144 4.144 9 C -0.070 4.070 10 C -0.176 4.176 11 C -0.042 4.042 12 N -0.163 5.163 13 C -0.048 4.048 14 C 0.271 3.729 15 F -0.167 7.167 16 F -0.165 7.165 17 C -0.019 4.019 18 C -0.189 4.189 19 C 0.074 3.926 20 H 0.080 0.920 21 N -0.387 5.387 22 C -0.373 4.373 23 H 0.109 0.891 24 C -0.187 4.187 25 N -0.579 5.579 26 Si 0.706 3.294 27 H -0.211 1.211 28 H -0.216 1.216 29 H -0.203 1.203 30 H 0.084 0.916 31 H 0.078 0.922 32 H 0.065 0.935 33 H 0.109 0.891 34 H 0.089 0.911 35 H 0.169 0.831 36 H 0.168 0.832 37 H 0.186 0.814 38 H 0.151 0.849 39 H 0.101 0.899 40 H 0.092 0.908 41 H 0.071 0.929 42 H 0.100 0.900 43 H 0.194 0.806 44 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 13.082 11.848 -11.832 21.249 hybrid contribution -0.599 -0.533 -0.179 0.822 sum 12.483 11.315 -12.011 20.691 Atomic orbital electron populations 1.21678 0.94015 1.02942 1.00994 1.21768 0.96697 0.99255 0.95413 0.90945 1.21721 0.77885 1.01440 0.99273 1.48015 1.07217 1.58696 1.17995 1.17910 0.85360 0.78863 0.82889 1.90772 1.74345 1.43170 1.33401 1.20707 0.95611 1.01588 0.96511 1.21809 0.94020 0.95389 0.95787 1.22273 0.95218 0.99707 1.00441 1.22996 1.00467 0.92134 0.88558 1.67371 1.05081 1.18039 1.25834 1.21699 0.91430 0.96799 0.94901 1.20102 0.75797 0.86600 0.90393 1.93028 1.77618 1.62507 1.83555 1.93071 1.44770 1.88731 1.89950 1.22060 0.97018 0.99048 0.83747 1.22593 1.00284 0.98728 0.97342 1.20182 0.90780 0.86278 0.95312 0.92024 1.42847 1.80557 1.09370 1.05936 1.19035 1.37883 0.94075 0.86284 0.89143 1.24625 1.01388 0.96704 0.95981 1.69685 1.52992 1.10820 1.24445 0.86702 0.78296 0.79670 0.84712 1.21084 1.21646 1.20345 0.91580 0.92235 0.93453 0.89122 0.91138 0.83135 0.83214 0.81380 0.84859 0.89888 0.90774 0.92888 0.89985 0.80551 0.93027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.00 9.06 37.16 0.34 -1.66 16 2 C -0.11 -1.63 2.67 -90.50 -0.24 -1.87 16 3 H 0.07 0.97 8.14 -51.92 -0.42 0.54 16 4 C 0.12 1.83 5.42 -3.71 -0.02 1.81 16 5 N -0.59 -8.80 2.97 -173.62 -0.51 -9.32 16 6 C 0.56 8.43 5.17 -12.33 -0.06 8.36 16 7 O -0.54 -9.15 15.49 5.32 0.08 -9.07 16 8 C -0.14 -1.77 4.87 -104.82 -0.51 -2.28 16 9 C -0.04 -0.42 7.58 -38.87 -0.29 -0.72 16 10 C -0.16 -1.16 10.10 -39.50 -0.40 -1.56 16 11 C 0.12 0.99 11.17 -17.47 -0.20 0.80 16 12 N -0.46 -5.47 9.85 -9.14 -0.09 -5.56 16 13 C 0.09 1.20 6.61 -82.17 -0.54 0.65 16 14 C 0.33 4.31 5.01 36.00 0.18 4.49 16 15 F -0.19 -2.60 16.97 2.25 0.04 -2.56 16 16 F -0.18 -2.90 14.81 2.25 0.03 -2.87 16 17 C 0.10 1.51 5.77 -3.49 -0.02 1.49 16 18 C -0.15 -2.16 5.80 -26.39 -0.15 -2.32 16 19 C 0.18 3.12 2.53 -67.89 -0.17 2.95 16 20 H 0.06 1.09 8.08 -51.93 -0.42 0.67 16 21 N -0.74 -15.76 3.44 -53.38 -0.18 -15.94 16 22 C -0.24 -6.31 10.41 -15.06 -0.16 -6.47 16 23 H 0.09 2.53 8.06 -52.48 -0.42 2.10 16 24 C 0.01 0.25 5.50 -17.43 -0.10 0.16 16 25 N -0.93 -28.23 13.97 55.49 0.78 -27.45 16 26 Si 0.88 21.56 27.73 -169.99 -4.71 16.85 16 27 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 28 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 29 H -0.28 -6.42 6.52 56.52 0.37 -6.05 16 30 H 0.07 1.10 7.54 -51.93 -0.39 0.71 16 31 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.09 1.38 6.99 -51.93 -0.36 1.02 16 34 H 0.07 1.20 6.64 -51.93 -0.34 0.85 16 35 H 0.15 1.21 7.60 -52.48 -0.40 0.81 16 36 H 0.15 0.61 8.06 -52.48 -0.42 0.18 16 37 H 0.17 0.86 8.06 -52.48 -0.42 0.43 16 38 H 0.13 1.44 8.14 -51.93 -0.42 1.02 16 39 H 0.08 1.45 7.74 -51.93 -0.40 1.05 16 40 H 0.07 0.92 4.40 -51.93 -0.23 0.69 16 41 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.08 1.30 8.14 -51.93 -0.42 0.87 16 43 H 0.36 7.79 3.79 -40.82 -0.15 7.63 16 44 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 357.73 15.07 5.39 5.39 Total: -1.00 -32.50 357.73 -7.21 -39.71 By element: Atomic # 1 Polarization: 12.66 SS G_CDS: -5.68 Total: 6.98 kcal Atomic # 6 Polarization: 6.19 SS G_CDS: -2.35 Total: 3.84 kcal Atomic # 7 Polarization: -58.25 SS G_CDS: -0.01 Total: -58.27 kcal Atomic # 8 Polarization: -9.15 SS G_CDS: 0.08 Total: -9.07 kcal Atomic # 9 Polarization: -5.50 SS G_CDS: 0.07 Total: -5.43 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -4.71 Total: 16.85 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -32.50 -7.21 -39.71 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036111299.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.085 kcal (2) G-P(sol) polarization free energy of solvation -32.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds