Wall clock time and date at job start Wed Apr 1 2020 00:37:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09008 * 109.49916 * 2 1 4 4 C 1.53191 * 109.49925 * 239.93343 * 2 1 3 5 5 N 1.46927 * 108.77245 * 185.38200 * 4 2 1 6 6 C 1.34777 * 120.62672 * 233.58322 * 5 4 2 7 7 O 1.21552 * 120.00179 * 4.18317 * 6 5 4 8 8 C 1.47842 * 120.00036 * 184.18605 * 6 5 4 9 9 C 1.40030 * 120.55755 * 302.43745 * 8 6 5 10 10 C 1.38351 * 118.28835 * 179.75182 * 9 8 6 11 11 C 1.38349 * 119.30638 * 0.55535 * 10 9 8 12 12 N 1.31931 * 121.07859 * 359.42792 * 11 10 9 13 13 C 1.31702 * 121.87513 * 0.27665 * 12 11 10 14 14 C 1.50697 * 119.71353 * 180.02562 * 13 12 11 15 15 F 1.39902 * 109.47314 * 21.11842 * 14 13 12 16 16 F 1.39903 * 109.47109 * 141.11543 * 14 13 12 17 17 C 1.46923 * 118.74291 * 53.86110 * 5 4 2 18 18 C 1.53626 * 108.54134 * 306.09239 * 17 5 4 19 19 C 1.53039 * 109.24025 * 54.85742 * 18 17 5 20 20 H 1.09001 * 109.45755 * 178.49178 * 19 18 17 21 21 N 1.46498 * 109.46367 * 58.53068 * 19 18 17 22 22 C 1.36932 * 120.00063 * 84.93309 * 21 19 18 23 23 H 1.08006 * 120.00220 * 359.97438 * 22 21 19 24 24 C 1.38814 * 120.00185 * 180.02562 * 22 21 19 25 25 N 1.31621 * 120.00198 * 179.97438 * 24 22 21 26 26 Si 1.86799 * 119.99636 * 359.97438 * 24 22 21 27 27 H 1.48503 * 109.47255 * 90.00168 * 26 24 22 28 28 H 1.48499 * 109.46791 * 210.00053 * 26 24 22 29 29 H 1.48500 * 109.47337 * 329.99729 * 26 24 22 30 30 H 1.08998 * 109.46745 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47132 * 300.06585 * 1 2 3 32 32 H 1.09004 * 109.46906 * 60.06510 * 1 2 3 33 33 H 1.08992 * 109.58781 * 65.59654 * 4 2 1 34 34 H 1.08997 * 109.58445 * 305.16742 * 4 2 1 35 35 H 1.08006 * 120.85238 * 0.02562 * 9 8 6 36 36 H 1.08008 * 120.34916 * 180.25795 * 10 9 8 37 37 H 1.08003 * 119.46689 * 179.70851 * 11 10 9 38 38 H 1.09000 * 109.47177 * 261.11619 * 14 13 12 39 39 H 1.09001 * 109.58503 * 65.92146 * 17 5 4 40 40 H 1.09003 * 109.58754 * 186.34976 * 17 5 4 41 41 H 1.08994 * 109.63392 * 294.85961 * 18 17 5 42 42 H 1.09004 * 109.43025 * 174.71894 * 18 17 5 43 43 H 0.97001 * 119.99697 * 264.93045 * 21 19 18 44 44 H 0.96997 * 119.99932 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0276 0.0000 4 6 2.0413 -0.7235 -1.2497 5 7 3.5047 -0.8281 -1.1700 6 6 4.2807 -0.3850 -2.1789 7 8 3.7766 0.1754 -3.1325 8 6 5.7452 -0.5805 -2.1259 9 6 6.4928 -0.0739 -1.0556 10 6 7.8595 -0.2886 -1.0509 11 6 8.4401 -0.9800 -2.0992 12 7 7.7105 -1.4459 -3.0947 13 6 6.4058 -1.2724 -3.1414 14 6 5.6197 -1.8261 -4.3018 15 9 6.3509 -2.8493 -4.9146 16 9 4.4018 -2.3360 -3.8391 17 6 4.1058 -1.4305 0.0277 18 6 3.5715 -0.6941 1.2655 19 6 2.0415 -0.7229 1.2482 20 1 1.6588 -0.2246 2.1389 21 7 1.5797 -2.1131 1.2307 22 6 1.4501 -2.8064 2.4044 23 1 1.6887 -2.3284 3.3431 24 6 1.0130 -4.1238 2.3878 25 7 0.8889 -4.7903 3.5160 26 14 0.6009 -4.9506 0.7643 27 1 1.8166 -5.6080 0.2209 28 1 -0.4572 -5.9695 0.9823 29 1 0.1156 -3.9318 -0.2010 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5149 0.8894 32 1 -0.3633 0.5128 -0.8906 33 1 1.7634 -0.1577 -2.1389 34 1 1.6057 -1.7215 -1.2981 35 1 6.0141 0.4665 -0.2524 36 1 8.4676 0.0839 -0.2396 37 1 9.5075 -1.1449 -2.1004 38 1 5.4302 -1.0321 -5.0241 39 1 3.8350 -2.4850 0.0813 40 1 5.1903 -1.3314 -0.0185 41 1 3.9161 0.3399 1.2536 42 1 3.9345 -1.1887 2.1665 43 1 1.3657 -2.5425 0.3876 44 1 0.5838 -5.7110 3.5043 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036111299.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:37:17 Heat of formation + Delta-G solvation = -93.446255 kcal Electronic energy + Delta-G solvation = -31132.722961 eV Core-core repulsion = 26720.673526 eV Total energy + Delta-G solvation = -4412.049435 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -50.18533 -48.20636 -42.08302 -40.71154 -39.12926 -36.07753 -34.78420 -33.79771 -33.38638 -32.99570 -31.49094 -28.48524 -27.52390 -26.89526 -25.28698 -24.79269 -23.62978 -23.05566 -21.47050 -19.99080 -19.74652 -18.91275 -18.76899 -18.64689 -18.35389 -17.50992 -17.12254 -16.69781 -16.30731 -16.26187 -15.82362 -15.48071 -15.26908 -15.15785 -15.03779 -15.03072 -14.57635 -14.51082 -14.41052 -14.23480 -13.98997 -13.69834 -13.57664 -13.33616 -13.07851 -12.98239 -12.73885 -12.57317 -12.49670 -12.09270 -12.01210 -11.96276 -11.69914 -11.37878 -11.22019 -11.05897 -10.86416 -10.66901 -10.36972 -9.74338 -9.24849 -7.99905 -5.29632 -0.49582 -0.07226 1.33598 1.35385 1.38488 1.41331 1.81807 2.20646 2.46775 2.47478 2.95519 3.06477 3.22256 3.33122 3.60237 3.65564 3.75975 3.78829 3.87738 3.92671 3.97637 3.99074 4.18426 4.19689 4.30051 4.32695 4.45670 4.54651 4.67107 4.78207 4.79522 4.89643 4.92358 4.98797 5.10394 5.14834 5.22266 5.24865 5.40040 5.42277 5.56376 5.83910 6.21991 6.25662 6.58538 6.87596 7.11655 7.89340 8.06034 9.21935 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.012737 B = 0.004050 C = 0.003921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2197.737186 B = 6912.362523 C = 7139.535761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.099 4.099 3 H 0.098 0.902 4 C 0.120 3.880 5 N -0.590 5.590 6 C 0.566 3.434 7 O -0.564 6.564 8 C -0.159 4.159 9 C -0.048 4.048 10 C -0.135 4.135 11 C 0.116 3.884 12 N -0.480 5.480 13 C 0.073 3.927 14 C 0.317 3.683 15 F -0.194 7.194 16 F -0.203 7.203 17 C 0.109 3.891 18 C -0.139 4.139 19 C 0.175 3.825 20 H 0.056 0.944 21 N -0.744 5.744 22 C -0.208 4.208 23 H 0.067 0.933 24 C -0.056 4.056 25 N -0.982 5.982 26 Si 0.930 3.070 27 H -0.288 1.288 28 H -0.300 1.300 29 H -0.258 1.258 30 H 0.038 0.962 31 H 0.063 0.937 32 H 0.068 0.932 33 H 0.093 0.907 34 H 0.049 0.951 35 H 0.171 0.829 36 H 0.195 0.805 37 H 0.205 0.795 38 H 0.152 0.848 39 H 0.049 0.951 40 H 0.101 0.899 41 H 0.090 0.910 42 H 0.069 0.931 43 H 0.360 0.640 44 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.255 14.551 -11.368 23.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.119 4.119 3 H 0.116 0.884 4 C -0.003 4.003 5 N -0.321 5.321 6 C 0.354 3.646 7 O -0.444 6.444 8 C -0.165 4.165 9 C -0.074 4.074 10 C -0.154 4.154 11 C -0.042 4.042 12 N -0.189 5.189 13 C -0.066 4.066 14 C 0.263 3.737 15 F -0.175 7.175 16 F -0.185 7.185 17 C -0.013 4.013 18 C -0.179 4.179 19 C 0.067 3.933 20 H 0.074 0.926 21 N -0.388 5.388 22 C -0.339 4.339 23 H 0.085 0.915 24 C -0.247 4.247 25 N -0.634 5.634 26 Si 0.760 3.240 27 H -0.215 1.215 28 H -0.227 1.227 29 H -0.183 1.183 30 H 0.058 0.942 31 H 0.082 0.918 32 H 0.087 0.913 33 H 0.111 0.889 34 H 0.068 0.932 35 H 0.188 0.812 36 H 0.212 0.788 37 H 0.221 0.779 38 H 0.169 0.831 39 H 0.068 0.932 40 H 0.119 0.881 41 H 0.109 0.891 42 H 0.088 0.912 43 H 0.194 0.806 44 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 15.352 14.305 -12.328 24.338 hybrid contribution -1.164 -1.149 -0.017 1.636 sum 14.189 13.156 -12.345 22.952 Atomic orbital electron populations 1.21659 0.93896 1.01566 1.02326 1.21684 0.96736 0.99933 0.93524 0.88411 1.21642 0.78506 1.00384 0.99748 1.48023 1.06959 1.58768 1.18300 1.18247 0.86391 0.77930 0.82077 1.90746 1.75213 1.44296 1.34157 1.20598 0.94238 1.03539 0.98101 1.22137 0.94999 0.95065 0.95177 1.22749 0.94489 0.97487 1.00692 1.23737 1.01904 0.90818 0.87707 1.67388 1.04684 1.19200 1.27603 1.21551 0.92054 0.97983 0.95026 1.20440 0.75231 0.86557 0.91501 1.92997 1.77737 1.63021 1.83768 1.93021 1.46115 1.89057 1.90259 1.21983 0.98607 0.97059 0.83614 1.22455 0.97898 1.00853 0.96722 1.20474 0.92534 0.83892 0.96431 0.92570 1.42864 1.80683 1.11004 1.04244 1.19023 1.34253 0.93641 0.87008 0.91481 1.25207 1.03236 0.97806 0.98455 1.69831 1.55972 1.10999 1.26568 0.85789 0.77518 0.78839 0.81867 1.21479 1.22674 1.18259 0.94238 0.91795 0.91294 0.88895 0.93236 0.81185 0.78833 0.77852 0.83125 0.93235 0.88098 0.89137 0.91232 0.80625 0.93676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.71 9.06 71.98 0.65 -3.05 16 2 C -0.10 -2.68 2.67 -10.71 -0.03 -2.71 16 3 H 0.10 2.23 8.14 -2.38 -0.02 2.21 16 4 C 0.12 3.54 5.42 86.36 0.47 4.01 16 5 N -0.59 -16.72 2.97 -821.49 -2.44 -19.16 16 6 C 0.57 16.10 5.17 86.79 0.45 16.55 16 7 O -0.56 -18.68 15.49 -3.88 -0.06 -18.74 16 8 C -0.16 -3.73 4.87 -19.99 -0.10 -3.82 16 9 C -0.05 -0.73 7.58 22.73 0.17 -0.56 16 10 C -0.14 -1.32 10.10 22.32 0.23 -1.10 16 11 C 0.12 1.51 11.17 84.70 0.95 2.46 16 12 N -0.48 -10.52 9.85 -182.84 -1.80 -12.32 16 13 C 0.07 1.81 6.61 42.89 0.28 2.10 16 14 C 0.32 8.39 5.01 71.23 0.36 8.75 16 15 F -0.19 -5.46 16.97 44.97 0.76 -4.70 16 16 F -0.20 -6.51 14.81 44.97 0.67 -5.84 16 17 C 0.11 2.99 5.77 86.51 0.50 3.49 16 18 C -0.14 -3.70 5.80 30.82 0.18 -3.52 16 19 C 0.17 5.63 2.53 45.02 0.11 5.74 16 20 H 0.06 1.90 8.08 -2.39 -0.02 1.88 16 21 N -0.74 -31.30 3.44 -322.80 -1.11 -32.41 16 22 C -0.21 -10.93 10.41 84.03 0.87 -10.05 16 23 H 0.07 3.82 8.06 -2.91 -0.02 3.79 16 24 C -0.06 -3.16 5.50 84.86 0.47 -2.69 16 25 N -0.98 -61.32 13.97 21.65 0.30 -61.01 16 26 Si 0.93 45.52 27.73 68.60 1.90 47.43 16 27 H -0.29 -14.13 7.11 99.48 0.71 -13.42 16 28 H -0.30 -15.05 7.11 99.48 0.71 -14.34 16 29 H -0.26 -11.57 6.52 99.48 0.65 -10.92 16 30 H 0.04 1.27 7.54 -2.39 -0.02 1.26 16 31 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 32 H 0.07 1.56 8.14 -2.38 -0.02 1.54 16 33 H 0.09 2.72 6.99 -2.39 -0.02 2.71 16 34 H 0.05 1.67 6.64 -2.39 -0.02 1.65 16 35 H 0.17 1.87 7.60 -2.91 -0.02 1.85 16 36 H 0.19 0.22 8.06 -2.91 -0.02 0.20 16 37 H 0.20 1.06 8.06 -2.91 -0.02 1.04 16 38 H 0.15 3.28 8.14 -2.39 -0.02 3.26 16 39 H 0.05 1.70 7.74 -2.39 -0.02 1.68 16 40 H 0.10 2.21 4.40 -2.39 -0.01 2.20 16 41 H 0.09 1.78 8.14 -2.39 -0.02 1.77 16 42 H 0.07 2.06 8.14 -2.38 -0.02 2.04 16 43 H 0.36 15.43 3.79 -92.71 -0.35 15.08 16 44 H 0.25 15.38 8.31 -92.71 -0.77 14.61 16 Total: -1.00 -73.86 357.73 4.42 -69.44 By element: Atomic # 1 Polarization: 21.10 SS G_CDS: 0.63 Total: 21.73 kcal Atomic # 6 Polarization: 10.03 SS G_CDS: 5.56 Total: 15.59 kcal Atomic # 7 Polarization: -119.86 SS G_CDS: -5.04 Total: -124.90 kcal Atomic # 8 Polarization: -18.68 SS G_CDS: -0.06 Total: -18.74 kcal Atomic # 9 Polarization: -11.97 SS G_CDS: 1.43 Total: -10.54 kcal Atomic # 14 Polarization: 45.52 SS G_CDS: 1.90 Total: 47.43 kcal Total: -73.86 4.42 -69.44 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036111299.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.009 kcal (2) G-P(sol) polarization free energy of solvation -73.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds