Wall clock time and date at job start Tue Mar 31 2020 22:18:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47046 * 2 1 4 4 H 1.09002 * 109.52349 * 305.08102 * 3 2 1 5 5 C 1.53191 * 109.49933 * 65.16205 * 3 2 1 6 6 N 1.46922 * 108.77634 * 174.58931 * 5 3 2 7 7 C 1.34774 * 120.62966 * 126.41607 * 6 5 3 8 8 O 1.21548 * 120.00451 * 359.97104 * 7 6 5 9 9 C 1.47849 * 119.99792 * 179.97438 * 7 6 5 10 10 C 1.40124 * 120.96272 * 89.71394 * 9 7 6 11 11 F 1.35104 * 120.51886 * 0.02562 * 10 9 7 12 12 C 1.38440 * 118.95997 * 179.70805 * 10 9 7 13 13 N 1.31762 * 120.92529 * 0.58287 * 12 10 9 14 14 C 1.31762 * 122.14681 * 359.71230 * 13 12 10 15 15 C 1.38435 * 120.93040 * 359.97438 * 14 13 12 16 16 F 1.35101 * 120.52314 * 180.02562 * 15 14 13 17 17 C 1.46927 * 118.73927 * 306.38790 * 6 5 3 18 18 C 1.53201 * 108.77324 * 53.61126 * 17 6 5 19 19 C 1.53038 * 109.31057 * 305.36418 * 18 17 6 20 20 H 1.09004 * 109.46508 * 301.35934 * 19 18 17 21 21 N 1.46502 * 109.45854 * 181.38606 * 19 18 17 22 22 C 1.36930 * 120.00159 * 85.00109 * 21 19 18 23 23 H 1.08000 * 119.99841 * 0.02562 * 22 21 19 24 24 C 1.38810 * 120.00182 * 179.97438 * 22 21 19 25 25 N 1.31622 * 119.99887 * 0.02562 * 24 22 21 26 26 Si 1.86798 * 120.00212 * 179.97438 * 24 22 21 27 27 H 1.48506 * 109.47297 * 89.99941 * 26 24 22 28 28 H 1.48503 * 109.47261 * 330.00122 * 26 24 22 29 29 H 1.48500 * 109.47454 * 210.00115 * 26 24 22 30 30 H 1.09001 * 109.46976 * 299.99522 * 1 2 3 31 31 H 1.09001 * 109.46763 * 60.00236 * 1 2 3 32 32 H 1.08999 * 109.46562 * 179.97438 * 1 2 3 33 33 H 1.09003 * 109.46909 * 239.99934 * 2 1 3 34 34 H 1.08999 * 109.47204 * 120.00057 * 2 1 3 35 35 H 1.09002 * 109.58770 * 54.79739 * 5 3 2 36 36 H 1.09007 * 109.69896 * 294.44820 * 5 3 2 37 37 H 1.07997 * 119.53340 * 180.30180 * 12 10 9 38 38 H 1.07997 * 119.53929 * 179.97438 * 14 13 12 39 39 H 1.09000 * 109.58599 * 293.83192 * 17 6 5 40 40 H 1.08990 * 109.70971 * 173.46644 * 17 6 5 41 41 H 1.08995 * 109.49428 * 185.41586 * 18 17 6 42 42 H 1.08997 * 109.52008 * 65.33166 * 18 17 6 43 43 H 0.97008 * 119.99482 * 265.00165 * 21 19 18 44 44 H 0.96993 * 120.00105 * 359.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6047 1.9828 -0.8407 5 6 1.6386 2.1268 1.3105 6 7 2.2450 3.4644 1.3506 7 6 1.4857 4.5564 1.5681 8 8 0.2870 4.4402 1.7328 9 6 2.1107 5.8957 1.6063 10 6 2.2470 6.6611 0.4405 11 9 1.8075 6.1880 -0.7462 12 6 2.8332 7.9125 0.5249 13 7 3.2693 8.3796 1.6772 14 6 3.1670 7.6919 2.7964 15 6 2.5891 6.4340 2.8083 16 9 2.4879 5.7362 3.9608 17 6 3.6952 3.5889 1.1498 18 6 4.0736 2.8882 -0.1590 19 6 3.5653 1.4451 -0.1258 20 1 4.0007 0.9262 0.7282 21 7 3.9542 0.7621 -1.3621 22 6 5.1918 0.1852 -1.4654 23 1 5.8810 0.2333 -0.6353 24 6 5.5601 -0.4624 -2.6366 25 7 4.7200 -0.5215 -3.6481 26 14 7.2486 -1.2488 -2.7778 27 1 7.1788 -2.6579 -2.3140 28 1 8.2160 -0.4984 -1.9373 29 1 7.6934 -1.2154 -4.1942 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3632 -1.0277 -0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 1.9965 1.5377 2.1549 36 1 0.5533 2.2159 1.3610 37 1 2.9384 8.5123 -0.3670 38 1 3.5392 8.1154 3.7175 39 1 4.2209 3.1189 1.9810 40 1 3.9693 4.6422 1.0928 41 1 5.1577 2.8895 -0.2720 42 1 3.6196 3.4147 -0.9984 43 1 3.3350 0.7186 -2.1075 44 1 3.8434 -0.1129 -3.5750 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037856395.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:18:42 Heat of formation + Delta-G solvation = -75.699321 kcal Electronic energy + Delta-G solvation = -30564.294463 eV Core-core repulsion = 26153.014593 eV Total energy + Delta-G solvation = -4411.279870 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -49.59333 -49.51537 -40.90158 -39.87608 -38.01654 -35.07120 -34.11359 -32.98708 -31.92407 -31.28243 -29.56939 -28.78516 -26.11766 -24.42470 -24.08553 -23.97410 -22.92253 -21.11182 -20.55794 -19.58138 -18.64617 -18.60933 -17.92282 -17.34992 -17.03021 -16.40059 -16.33286 -15.94319 -15.84683 -15.10981 -15.07847 -14.65251 -14.28241 -14.20203 -14.05722 -13.71074 -13.66364 -13.58710 -13.48605 -13.27620 -12.98360 -12.57354 -12.28565 -12.07154 -11.81029 -11.46216 -11.03870 -10.85163 -10.79700 -10.66556 -10.42066 -10.35314 -10.29269 -10.08853 -9.99828 -9.91676 -9.49820 -9.23399 -8.96927 -8.75343 -7.09772 -6.14895 -3.15729 0.08430 0.14928 2.08933 2.60238 2.82995 3.07526 3.46014 3.47876 3.52054 3.66113 3.73082 3.83415 4.12665 4.40192 4.60684 4.76993 4.86575 4.90641 5.03316 5.06272 5.14212 5.18906 5.27526 5.38375 5.49172 5.51550 5.58420 5.71854 5.82323 5.87108 5.95112 5.99171 6.07942 6.17199 6.19475 6.29976 6.34342 6.48967 6.65300 6.76168 6.88001 7.03464 7.11776 7.75020 7.75659 8.70369 9.16154 10.02683 10.17822 11.33154 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.013197 B = 0.003484 C = 0.003113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2121.138489 B = 8035.790507 C = 8991.908192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.110 4.110 3 C -0.106 4.106 4 H 0.070 0.930 5 C 0.119 3.881 6 N -0.588 5.588 7 C 0.564 3.436 8 O -0.521 6.521 9 C -0.145 4.145 10 C 0.113 3.887 11 F -0.106 7.106 12 C 0.070 3.930 13 N -0.419 5.419 14 C 0.068 3.932 15 C 0.109 3.891 16 F -0.110 7.110 17 C 0.106 3.894 18 C -0.150 4.150 19 C 0.190 3.810 20 H 0.051 0.949 21 N -0.730 5.730 22 C -0.332 4.332 23 H 0.064 0.936 24 C -0.042 4.042 25 N -0.943 5.943 26 Si 1.080 2.920 27 H -0.296 1.296 28 H -0.295 1.295 29 H -0.288 1.288 30 H 0.050 0.950 31 H 0.051 0.949 32 H 0.051 0.949 33 H 0.081 0.919 34 H 0.059 0.941 35 H 0.073 0.927 36 H 0.094 0.906 37 H 0.184 0.816 38 H 0.183 0.817 39 H 0.075 0.925 40 H 0.068 0.932 41 H 0.080 0.920 42 H 0.060 0.940 43 H 0.367 0.633 44 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.572 14.965 13.095 20.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.148 4.148 3 C -0.126 4.126 4 H 0.089 0.911 5 C -0.002 4.002 6 N -0.320 5.320 7 C 0.349 3.651 8 O -0.398 6.398 9 C -0.158 4.158 10 C 0.091 3.909 11 F -0.084 7.084 12 C -0.089 4.089 13 N -0.126 5.126 14 C -0.091 4.091 15 C 0.087 3.913 16 F -0.088 7.088 17 C -0.017 4.017 18 C -0.192 4.192 19 C 0.079 3.921 20 H 0.069 0.931 21 N -0.372 5.372 22 C -0.463 4.463 23 H 0.082 0.918 24 C -0.240 4.240 25 N -0.588 5.588 26 Si 0.912 3.088 27 H -0.223 1.223 28 H -0.222 1.222 29 H -0.214 1.214 30 H 0.069 0.931 31 H 0.071 0.929 32 H 0.070 0.930 33 H 0.099 0.901 34 H 0.078 0.922 35 H 0.091 0.909 36 H 0.112 0.888 37 H 0.201 0.799 38 H 0.200 0.800 39 H 0.093 0.907 40 H 0.087 0.913 41 H 0.098 0.902 42 H 0.079 0.921 43 H 0.201 0.799 44 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -3.651 14.766 12.354 19.596 hybrid contribution -1.546 -0.105 0.741 1.718 sum -5.198 14.662 13.095 20.333 Atomic orbital electron populations 1.21854 0.96577 1.01254 1.01407 1.21435 0.94550 0.95373 1.03480 1.21821 0.97794 0.96442 0.96584 0.91121 1.21874 0.99612 0.80468 0.98296 1.48122 1.08782 1.06544 1.68515 1.17657 0.86457 0.83122 0.77914 1.90825 1.13698 1.85645 1.49599 1.20628 1.03603 0.98406 0.93180 1.18660 0.97794 0.93758 0.80707 1.91644 1.86367 1.88097 1.42339 1.23058 0.96158 0.91927 0.97772 1.67652 1.13900 1.33380 0.97664 1.23023 0.98076 0.89492 0.98494 1.18619 0.99364 0.92057 0.81264 1.91607 1.93514 1.78207 1.45522 1.21922 0.78899 1.00878 0.99995 1.22684 1.02539 0.99284 0.94648 1.20109 0.90556 0.90330 0.91099 0.93134 1.42405 1.16613 1.65546 1.12620 1.20028 0.92452 1.32184 1.01617 0.91775 1.25722 1.05784 1.00154 0.92358 1.70850 1.08368 1.47453 1.32101 0.83224 0.74244 0.75739 0.75634 1.22329 1.22201 1.21424 0.93101 0.92949 0.92950 0.90076 0.92203 0.90924 0.88760 0.79867 0.79967 0.90675 0.91340 0.90185 0.92124 0.79915 0.93314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.07 9.68 37.16 0.36 -1.71 16 2 C -0.11 -1.73 5.31 -26.73 -0.14 -1.87 16 3 C -0.11 -1.70 1.92 -90.50 -0.17 -1.88 16 4 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 5 C 0.12 1.71 5.33 -3.71 -0.02 1.69 16 6 N -0.59 -8.44 2.97 -173.88 -0.52 -8.96 16 7 C 0.56 8.53 6.62 -12.33 -0.08 8.45 16 8 O -0.52 -9.40 16.52 5.32 0.09 -9.31 16 9 C -0.15 -1.80 3.68 -104.55 -0.38 -2.18 16 10 C 0.11 1.27 7.19 -38.80 -0.28 0.99 16 11 F -0.11 -1.37 16.92 2.25 0.04 -1.33 16 12 C 0.07 0.60 11.16 -17.51 -0.20 0.40 16 13 N -0.42 -3.70 10.32 -13.18 -0.14 -3.84 16 14 C 0.07 0.54 11.16 -17.51 -0.20 0.35 16 15 C 0.11 1.13 7.34 -38.80 -0.28 0.84 16 16 F -0.11 -1.21 16.92 2.25 0.04 -1.17 16 17 C 0.11 1.41 6.33 -3.71 -0.02 1.39 16 18 C -0.15 -2.48 5.66 -26.61 -0.15 -2.63 16 19 C 0.19 3.50 2.19 -67.89 -0.15 3.35 16 20 H 0.05 0.97 8.08 -51.93 -0.42 0.55 16 21 N -0.73 -17.04 4.33 -53.38 -0.23 -17.27 16 22 C -0.33 -8.81 9.93 -15.06 -0.15 -8.96 16 23 H 0.06 1.68 7.83 -52.49 -0.41 1.27 16 24 C -0.04 -1.18 5.50 -17.43 -0.10 -1.28 16 25 N -0.94 -28.31 13.70 55.49 0.76 -27.55 16 26 Si 1.08 25.23 29.92 -169.99 -5.09 20.15 16 27 H -0.30 -6.75 7.11 56.52 0.40 -6.35 16 28 H -0.30 -6.49 7.11 56.52 0.40 -6.09 16 29 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 30 H 0.05 0.63 6.70 -51.93 -0.35 0.28 16 31 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.08 1.52 7.22 -51.93 -0.37 1.14 16 34 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 35 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 36 H 0.09 1.40 5.73 -51.93 -0.30 1.10 16 37 H 0.18 1.05 8.06 -52.49 -0.42 0.63 16 38 H 0.18 0.86 8.06 -52.49 -0.42 0.44 16 39 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.07 0.81 6.23 -51.93 -0.32 0.49 16 41 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 42 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 43 H 0.37 9.05 6.35 -40.82 -0.26 8.79 16 44 H 0.26 7.57 6.77 -40.82 -0.28 7.29 16 LS Contribution 368.07 15.07 5.55 5.55 Total: -1.00 -32.04 368.07 -7.20 -39.23 By element: Atomic # 1 Polarization: 13.29 SS G_CDS: -5.73 Total: 7.56 kcal Atomic # 6 Polarization: -1.08 SS G_CDS: -1.97 Total: -3.05 kcal Atomic # 7 Polarization: -57.50 SS G_CDS: -0.12 Total: -57.63 kcal Atomic # 8 Polarization: -9.40 SS G_CDS: 0.09 Total: -9.31 kcal Atomic # 9 Polarization: -2.58 SS G_CDS: 0.08 Total: -2.50 kcal Atomic # 14 Polarization: 25.23 SS G_CDS: -5.09 Total: 20.15 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -32.04 -7.20 -39.23 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037856395.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.465 kcal (2) G-P(sol) polarization free energy of solvation -32.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.235 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds