Wall clock time and date at job start Tue Mar 31 2020 22:18:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47046 * 2 1 4 4 H 1.09002 * 109.52349 * 305.08102 * 3 2 1 5 5 C 1.53191 * 109.49933 * 65.16205 * 3 2 1 6 6 N 1.46922 * 108.77634 * 174.58931 * 5 3 2 7 7 C 1.34774 * 120.62966 * 126.41607 * 6 5 3 8 8 O 1.21548 * 120.00451 * 359.97104 * 7 6 5 9 9 C 1.47849 * 119.99792 * 179.97438 * 7 6 5 10 10 C 1.40124 * 120.96272 * 89.71394 * 9 7 6 11 11 F 1.35104 * 120.51886 * 0.02562 * 10 9 7 12 12 C 1.38440 * 118.95997 * 179.70805 * 10 9 7 13 13 N 1.31762 * 120.92529 * 0.58287 * 12 10 9 14 14 C 1.31762 * 122.14681 * 359.71230 * 13 12 10 15 15 C 1.38435 * 120.93040 * 359.97438 * 14 13 12 16 16 F 1.35101 * 120.52314 * 180.02562 * 15 14 13 17 17 C 1.46927 * 118.73927 * 306.38790 * 6 5 3 18 18 C 1.53201 * 108.77324 * 53.61126 * 17 6 5 19 19 C 1.53038 * 109.31057 * 305.36418 * 18 17 6 20 20 H 1.09004 * 109.46508 * 301.35934 * 19 18 17 21 21 N 1.46502 * 109.45854 * 181.38606 * 19 18 17 22 22 C 1.36930 * 120.00159 * 85.00109 * 21 19 18 23 23 H 1.08000 * 119.99841 * 0.02562 * 22 21 19 24 24 C 1.38810 * 120.00182 * 179.97438 * 22 21 19 25 25 N 1.31622 * 119.99887 * 0.02562 * 24 22 21 26 26 Si 1.86798 * 120.00212 * 179.97438 * 24 22 21 27 27 H 1.48506 * 109.47297 * 89.99941 * 26 24 22 28 28 H 1.48503 * 109.47261 * 330.00122 * 26 24 22 29 29 H 1.48500 * 109.47454 * 210.00115 * 26 24 22 30 30 H 1.09001 * 109.46976 * 299.99522 * 1 2 3 31 31 H 1.09001 * 109.46763 * 60.00236 * 1 2 3 32 32 H 1.08999 * 109.46562 * 179.97438 * 1 2 3 33 33 H 1.09003 * 109.46909 * 239.99934 * 2 1 3 34 34 H 1.08999 * 109.47204 * 120.00057 * 2 1 3 35 35 H 1.09002 * 109.58770 * 54.79739 * 5 3 2 36 36 H 1.09007 * 109.69896 * 294.44820 * 5 3 2 37 37 H 1.07997 * 119.53340 * 180.30180 * 12 10 9 38 38 H 1.07997 * 119.53929 * 179.97438 * 14 13 12 39 39 H 1.09000 * 109.58599 * 293.83192 * 17 6 5 40 40 H 1.08990 * 109.70971 * 173.46644 * 17 6 5 41 41 H 1.08995 * 109.49428 * 185.41586 * 18 17 6 42 42 H 1.08997 * 109.52008 * 65.33166 * 18 17 6 43 43 H 0.97008 * 119.99482 * 265.00165 * 21 19 18 44 44 H 0.96993 * 120.00105 * 359.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6047 1.9828 -0.8407 5 6 1.6386 2.1268 1.3105 6 7 2.2450 3.4644 1.3506 7 6 1.4857 4.5564 1.5681 8 8 0.2870 4.4402 1.7328 9 6 2.1107 5.8957 1.6063 10 6 2.2470 6.6611 0.4405 11 9 1.8075 6.1880 -0.7462 12 6 2.8332 7.9125 0.5249 13 7 3.2693 8.3796 1.6772 14 6 3.1670 7.6919 2.7964 15 6 2.5891 6.4340 2.8083 16 9 2.4879 5.7362 3.9608 17 6 3.6952 3.5889 1.1498 18 6 4.0736 2.8882 -0.1590 19 6 3.5653 1.4451 -0.1258 20 1 4.0007 0.9262 0.7282 21 7 3.9542 0.7621 -1.3621 22 6 5.1918 0.1852 -1.4654 23 1 5.8810 0.2333 -0.6353 24 6 5.5601 -0.4624 -2.6366 25 7 4.7200 -0.5215 -3.6481 26 14 7.2486 -1.2488 -2.7778 27 1 7.1788 -2.6579 -2.3140 28 1 8.2160 -0.4984 -1.9373 29 1 7.6934 -1.2154 -4.1942 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3632 -1.0277 -0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 1.9965 1.5377 2.1549 36 1 0.5533 2.2159 1.3610 37 1 2.9384 8.5123 -0.3670 38 1 3.5392 8.1154 3.7175 39 1 4.2209 3.1189 1.9810 40 1 3.9693 4.6422 1.0928 41 1 5.1577 2.8895 -0.2720 42 1 3.6196 3.4147 -0.9984 43 1 3.3350 0.7186 -2.1075 44 1 3.8434 -0.1129 -3.5750 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001037856395.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:18:42 Heat of formation + Delta-G solvation = -95.347297 kcal Electronic energy + Delta-G solvation = -30565.146463 eV Core-core repulsion = 26153.014593 eV Total energy + Delta-G solvation = -4412.131870 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -50.41544 -50.37835 -41.92176 -40.83442 -39.36741 -36.58649 -35.62149 -33.89053 -33.57686 -31.99611 -31.08425 -30.17207 -27.31230 -25.86838 -25.23082 -24.83247 -24.52424 -22.48961 -21.71867 -20.87259 -19.49538 -19.43454 -19.31143 -18.97848 -18.04804 -17.31682 -17.22527 -16.86523 -16.74108 -16.69914 -16.33185 -15.97146 -15.68796 -15.42652 -15.13415 -14.97940 -14.89732 -14.75841 -14.61414 -14.41270 -14.20196 -13.65023 -13.48553 -13.36747 -13.21387 -12.78591 -12.63593 -12.50784 -12.26259 -11.93305 -11.88135 -11.72299 -11.66759 -11.51383 -11.19759 -11.10442 -11.02139 -10.83462 -10.21511 -10.00776 -9.09666 -8.34770 -5.29129 -0.74153 -0.56185 0.95285 1.53112 1.59489 1.69388 1.82893 2.10238 2.28857 2.69763 2.72212 2.77864 3.12886 3.37707 3.42227 3.54555 3.58430 3.65690 3.77758 3.82827 4.01233 4.13588 4.14696 4.17463 4.25534 4.30740 4.47760 4.52466 4.55430 4.61051 4.62811 4.69894 4.84792 4.87425 5.00432 5.11606 5.17896 5.18869 5.28982 5.37651 5.47525 5.63376 5.94709 6.34020 6.52167 6.58992 7.11042 8.01022 8.14516 9.16787 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.013197 B = 0.003484 C = 0.003113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2121.138489 B = 8035.790507 C = 8991.908192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.105 4.105 3 C -0.094 4.094 4 H 0.051 0.949 5 C 0.124 3.876 6 N -0.590 5.590 7 C 0.562 3.438 8 O -0.558 6.558 9 C -0.164 4.164 10 C 0.094 3.906 11 F -0.123 7.123 12 C 0.088 3.912 13 N -0.423 5.423 14 C 0.091 3.909 15 C 0.104 3.896 16 F -0.115 7.115 17 C 0.115 3.885 18 C -0.139 4.139 19 C 0.185 3.815 20 H 0.051 0.949 21 N -0.741 5.741 22 C -0.321 4.321 23 H 0.069 0.931 24 C -0.104 4.104 25 N -0.979 5.979 26 Si 1.126 2.874 27 H -0.288 1.288 28 H -0.271 1.271 29 H -0.298 1.298 30 H 0.065 0.935 31 H 0.045 0.955 32 H 0.063 0.937 33 H 0.045 0.955 34 H 0.068 0.932 35 H 0.092 0.908 36 H 0.092 0.908 37 H 0.213 0.787 38 H 0.221 0.779 39 H 0.096 0.904 40 H 0.088 0.912 41 H 0.070 0.930 42 H 0.043 0.957 43 H 0.357 0.643 44 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.439 16.685 15.424 22.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.143 4.143 3 C -0.114 4.114 4 H 0.070 0.930 5 C 0.002 3.998 6 N -0.320 5.320 7 C 0.348 3.652 8 O -0.436 6.436 9 C -0.176 4.176 10 C 0.072 3.928 11 F -0.102 7.102 12 C -0.070 4.070 13 N -0.130 5.130 14 C -0.067 4.067 15 C 0.081 3.919 16 F -0.094 7.094 17 C -0.007 4.007 18 C -0.180 4.180 19 C 0.077 3.923 20 H 0.069 0.931 21 N -0.382 5.382 22 C -0.452 4.452 23 H 0.087 0.913 24 C -0.295 4.295 25 N -0.627 5.627 26 Si 0.952 3.048 27 H -0.215 1.215 28 H -0.196 1.196 29 H -0.225 1.225 30 H 0.084 0.916 31 H 0.064 0.936 32 H 0.082 0.918 33 H 0.064 0.936 34 H 0.087 0.913 35 H 0.110 0.890 36 H 0.110 0.890 37 H 0.229 0.771 38 H 0.237 0.763 39 H 0.114 0.886 40 H 0.106 0.894 41 H 0.089 0.911 42 H 0.062 0.938 43 H 0.189 0.811 44 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -2.513 16.521 14.737 22.281 hybrid contribution -1.928 -0.562 0.094 2.010 sum -4.441 15.959 14.831 22.234 Atomic orbital electron populations 1.21792 0.94654 1.02162 1.01790 1.21345 0.96224 0.94705 1.02067 1.21654 0.95869 0.96773 0.97105 0.93008 1.21807 0.99634 0.80774 0.97573 1.48188 1.09169 1.06499 1.68132 1.18079 0.86078 0.84171 0.76868 1.90794 1.15248 1.86387 1.51219 1.20573 1.05004 0.97304 0.94728 1.18891 0.99297 0.94773 0.79882 1.91602 1.86868 1.88466 1.43243 1.23484 0.94025 0.90753 0.98775 1.67816 1.14022 1.33251 0.97883 1.23598 0.95673 0.87994 0.99484 1.18748 0.99988 0.92798 0.80355 1.91596 1.93644 1.78494 1.45624 1.21895 0.78397 1.01888 0.98536 1.22450 1.01573 0.97876 0.96135 1.20330 0.92209 0.90895 0.88907 0.93132 1.42579 1.15639 1.66106 1.13890 1.20351 0.93270 1.30405 1.01196 0.91274 1.27037 1.08494 1.01461 0.92493 1.70961 1.08537 1.49729 1.33495 0.82632 0.71191 0.75632 0.75368 1.21463 1.19628 1.22478 0.91625 0.93616 0.91807 0.93609 0.91342 0.88972 0.88991 0.77067 0.76302 0.88605 0.89408 0.91123 0.93797 0.81127 0.94673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.90 9.68 71.98 0.70 -3.21 16 2 C -0.11 -3.34 5.31 30.60 0.16 -3.18 16 3 C -0.09 -3.04 1.92 -10.72 -0.02 -3.06 16 4 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 5 C 0.12 3.45 5.33 86.36 0.46 3.91 16 6 N -0.59 -16.35 2.97 -822.31 -2.44 -18.79 16 7 C 0.56 16.66 6.62 86.79 0.57 17.24 16 8 O -0.56 -20.14 16.52 -3.87 -0.06 -20.20 16 9 C -0.16 -3.82 3.68 -19.82 -0.07 -3.89 16 10 C 0.09 1.98 7.19 22.78 0.16 2.14 16 11 F -0.12 -3.17 16.92 44.97 0.76 -2.41 16 12 C 0.09 1.28 11.16 84.75 0.95 2.23 16 13 N -0.42 -5.99 10.32 -195.62 -2.02 -8.01 16 14 C 0.09 1.12 11.16 84.75 0.95 2.07 16 15 C 0.10 1.88 7.34 22.78 0.17 2.04 16 16 F -0.12 -2.26 16.92 44.97 0.76 -1.50 16 17 C 0.12 2.88 6.33 86.37 0.55 3.42 16 18 C -0.14 -4.56 5.66 30.67 0.17 -4.39 16 19 C 0.19 6.86 2.19 45.02 0.10 6.95 16 20 H 0.05 1.89 8.08 -2.39 -0.02 1.87 16 21 N -0.74 -35.51 4.33 -322.81 -1.40 -36.91 16 22 C -0.32 -17.15 9.93 84.03 0.83 -16.32 16 23 H 0.07 3.57 7.83 -2.91 -0.02 3.55 16 24 C -0.10 -5.86 5.50 84.86 0.47 -5.39 16 25 N -0.98 -60.57 13.70 21.65 0.30 -60.27 16 26 Si 1.13 50.94 29.92 68.60 2.05 52.99 16 27 H -0.29 -12.52 7.11 99.48 0.71 -11.81 16 28 H -0.27 -11.05 7.11 99.48 0.71 -10.35 16 29 H -0.30 -13.88 7.11 99.48 0.71 -13.17 16 30 H 0.06 1.56 6.70 -2.39 -0.02 1.54 16 31 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 33 H 0.05 1.78 7.22 -2.39 -0.02 1.77 16 34 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 35 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 36 H 0.09 2.67 5.73 -2.38 -0.01 2.65 16 37 H 0.21 1.76 8.06 -2.91 -0.02 1.74 16 38 H 0.22 1.00 8.06 -2.91 -0.02 0.98 16 39 H 0.10 2.06 8.14 -2.39 -0.02 2.04 16 40 H 0.09 1.90 6.23 -2.39 -0.01 1.89 16 41 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 42 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 43 H 0.36 18.47 6.35 -92.70 -0.59 17.89 16 44 H 0.24 15.06 6.77 -92.71 -0.63 14.44 16 Total: -1.00 -71.36 368.07 4.69 -66.67 By element: Atomic # 1 Polarization: 27.26 SS G_CDS: 0.60 Total: 27.86 kcal Atomic # 6 Polarization: -5.57 SS G_CDS: 6.14 Total: 0.57 kcal Atomic # 7 Polarization: -118.42 SS G_CDS: -5.56 Total: -123.98 kcal Atomic # 8 Polarization: -20.14 SS G_CDS: -0.06 Total: -20.20 kcal Atomic # 9 Polarization: -5.43 SS G_CDS: 1.52 Total: -3.91 kcal Atomic # 14 Polarization: 50.94 SS G_CDS: 2.05 Total: 52.99 kcal Total: -71.36 4.69 -66.67 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037856395.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.677 kcal (2) G-P(sol) polarization free energy of solvation -71.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds