Wall clock time and date at job start Tue Mar 31 2020 22:18:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.46833 * 2 1 4 4 H 1.09002 * 109.49725 * 304.93757 * 3 2 1 5 5 C 1.53192 * 109.49579 * 65.00058 * 3 2 1 6 6 N 1.46927 * 108.77318 * 174.61998 * 5 3 2 7 7 C 1.34773 * 120.63516 * 126.41107 * 6 5 3 8 8 O 1.21555 * 119.99820 * 359.97438 * 7 6 5 9 9 C 1.47851 * 120.00256 * 179.97438 * 7 6 5 10 10 C 1.40121 * 120.95888 * 89.72452 * 9 7 6 11 11 F 1.35105 * 120.51798 * 359.97438 * 10 9 7 12 12 C 1.38428 * 118.96028 * 179.77775 * 10 9 7 13 13 N 1.31776 * 120.92737 * 0.50741 * 12 10 9 14 14 C 1.31765 * 122.13947 * 359.73868 * 13 12 10 15 15 C 1.38434 * 120.93332 * 0.02562 * 14 13 12 16 16 F 1.35100 * 120.52061 * 179.97438 * 15 14 13 17 17 C 1.46926 * 118.73580 * 306.38910 * 6 5 3 18 18 C 1.53192 * 108.77820 * 53.60911 * 17 6 5 19 19 C 1.53033 * 109.31270 * 305.36633 * 18 17 6 20 20 H 1.09004 * 109.45285 * 181.37911 * 19 18 17 21 21 N 1.46502 * 109.46177 * 301.34300 * 19 18 17 22 22 C 1.36934 * 119.99932 * 275.07154 * 21 19 18 23 23 H 1.08006 * 120.00240 * 359.97438 * 22 21 19 24 24 C 1.38812 * 120.00092 * 179.97438 * 22 21 19 25 25 N 1.31612 * 120.00084 * 359.97438 * 24 22 21 26 26 Si 1.86802 * 120.00127 * 179.97438 * 24 22 21 27 27 H 1.48500 * 109.47151 * 59.99821 * 26 24 22 28 28 H 1.48497 * 109.47378 * 180.02562 * 26 24 22 29 29 H 1.48508 * 109.47182 * 299.99985 * 26 24 22 30 30 H 1.09006 * 109.47260 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47560 * 299.99824 * 1 2 3 32 32 H 1.09002 * 109.47557 * 60.00450 * 1 2 3 33 33 H 1.08992 * 109.47087 * 240.00095 * 2 1 3 34 34 H 1.09000 * 109.47039 * 119.99548 * 2 1 3 35 35 H 1.08997 * 109.58972 * 54.82989 * 5 3 2 36 36 H 1.09001 * 109.70306 * 294.47368 * 5 3 2 37 37 H 1.07995 * 119.53894 * 180.26744 * 12 10 9 38 38 H 1.08002 * 119.53268 * 180.02562 * 14 13 12 39 39 H 1.09006 * 109.58406 * 173.39827 * 17 6 5 40 40 H 1.09002 * 109.59019 * 293.81816 * 17 6 5 41 41 H 1.09000 * 109.49511 * 65.31256 * 18 17 6 42 42 H 1.08995 * 109.49883 * 185.40976 * 18 17 6 43 43 H 0.96994 * 120.00060 * 95.06337 * 21 19 18 44 44 H 0.97004 * 120.00333 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6064 1.9817 -0.8423 5 6 1.6349 2.1280 1.3088 6 7 2.2407 3.4660 1.3490 7 6 1.4804 4.5579 1.5633 8 8 0.2813 4.4413 1.7253 9 6 2.1046 5.8976 1.6016 10 6 2.2433 6.6618 0.4353 11 9 1.8076 6.1867 -0.7520 12 6 2.8299 7.9128 0.5195 13 7 3.2631 8.3815 1.6723 14 6 3.1576 7.6953 2.7922 15 6 2.5803 6.4371 2.8041 16 9 2.4769 5.7405 3.9571 17 6 3.6912 3.5909 1.1515 18 6 4.0732 2.8890 -0.1555 19 6 3.5655 1.4457 -0.1220 20 1 3.8573 0.9368 -1.0407 21 7 4.1485 0.7497 1.0277 22 6 5.3868 0.1745 0.9240 23 1 5.9336 0.2336 -0.0056 24 6 5.9395 -0.4845 2.0135 25 7 5.2735 -0.5562 3.1464 26 14 7.6285 -1.2697 1.8718 27 1 8.6321 -0.2280 1.5358 28 1 7.9886 -1.9061 3.1643 29 1 7.6074 -2.2999 0.8023 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3634 0.5138 -0.8900 33 1 1.8933 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 1.9911 1.5400 2.1547 36 1 0.5496 2.2167 1.3566 37 1 2.9374 8.5115 -0.3729 38 1 3.5267 8.1204 3.7139 39 1 3.9626 4.6450 1.0930 40 1 4.2152 3.1223 1.9846 41 1 3.6206 3.4144 -0.9964 42 1 5.1576 2.8907 -0.2659 43 1 3.6574 0.6964 1.8624 44 1 5.6595 -1.0170 3.9077 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037856396.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:18:46 Heat of formation + Delta-G solvation = -74.177167 kcal Electronic energy + Delta-G solvation = -30963.869892 eV Core-core repulsion = 26552.656027 eV Total energy + Delta-G solvation = -4411.213865 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.44351 -49.39229 -40.74629 -39.74983 -37.93113 -34.64542 -33.82976 -32.83812 -31.77148 -31.15851 -29.54543 -28.63427 -26.18456 -24.35931 -23.95545 -23.86774 -23.51103 -20.96466 -20.43722 -18.76219 -18.50801 -18.38155 -17.65277 -17.33907 -16.84329 -16.26761 -16.13357 -15.76239 -15.71321 -15.06379 -14.63791 -14.58333 -14.20291 -14.07890 -14.06586 -13.76788 -13.55914 -13.35508 -13.30021 -13.13445 -12.63067 -12.44131 -12.32656 -11.88636 -11.49576 -11.17325 -11.05078 -10.87054 -10.81960 -10.69441 -10.37243 -10.33257 -10.26769 -10.16915 -9.88120 -9.78286 -9.61178 -9.37398 -8.97888 -8.44507 -7.03875 -5.83569 -3.12654 0.22643 0.27515 2.29531 2.80804 2.98039 3.21592 3.38725 3.44162 3.45011 3.59163 3.86335 4.02878 4.26116 4.53088 4.53352 4.95303 5.02926 5.04702 5.18658 5.24750 5.30158 5.37775 5.44274 5.53537 5.63494 5.70598 5.72945 5.84006 5.98042 5.99970 6.06548 6.08697 6.25375 6.28863 6.35218 6.46369 6.51756 6.62620 6.67700 6.84403 6.91312 7.14989 7.39118 7.63682 7.97903 8.34493 9.46304 10.01731 10.36951 11.38597 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.011589 B = 0.004095 C = 0.003534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2415.553040 B = 6836.441783 C = 7921.409341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.109 4.109 3 C -0.103 4.103 4 H 0.068 0.932 5 C 0.118 3.882 6 N -0.582 5.582 7 C 0.560 3.440 8 O -0.527 6.527 9 C -0.142 4.142 10 C 0.111 3.889 11 F -0.110 7.110 12 C 0.066 3.934 13 N -0.421 5.421 14 C 0.068 3.932 15 C 0.113 3.887 16 F -0.107 7.107 17 C 0.113 3.887 18 C -0.149 4.149 19 C 0.179 3.821 20 H 0.054 0.946 21 N -0.718 5.718 22 C -0.240 4.240 23 H 0.069 0.931 24 C -0.009 4.009 25 N -0.932 5.932 26 Si 0.904 3.096 27 H -0.287 1.287 28 H -0.292 1.292 29 H -0.287 1.287 30 H 0.050 0.950 31 H 0.053 0.947 32 H 0.048 0.952 33 H 0.063 0.937 34 H 0.077 0.923 35 H 0.081 0.919 36 H 0.089 0.911 37 H 0.182 0.818 38 H 0.183 0.817 39 H 0.060 0.940 40 H 0.092 0.908 41 H 0.050 0.950 42 H 0.077 0.923 43 H 0.384 0.616 44 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.171 14.712 -4.963 16.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.147 4.147 3 C -0.123 4.123 4 H 0.086 0.914 5 C -0.004 4.004 6 N -0.312 5.312 7 C 0.345 3.655 8 O -0.404 6.404 9 C -0.155 4.155 10 C 0.088 3.912 11 F -0.088 7.088 12 C -0.092 4.092 13 N -0.128 5.128 14 C -0.091 4.091 15 C 0.090 3.910 16 F -0.085 7.085 17 C -0.009 4.009 18 C -0.190 4.190 19 C 0.068 3.932 20 H 0.072 0.928 21 N -0.361 5.361 22 C -0.371 4.371 23 H 0.087 0.913 24 C -0.205 4.205 25 N -0.580 5.580 26 Si 0.736 3.264 27 H -0.214 1.214 28 H -0.218 1.218 29 H -0.213 1.213 30 H 0.069 0.931 31 H 0.072 0.928 32 H 0.067 0.933 33 H 0.082 0.918 34 H 0.096 0.904 35 H 0.099 0.901 36 H 0.107 0.893 37 H 0.199 0.801 38 H 0.200 0.800 39 H 0.078 0.922 40 H 0.110 0.890 41 H 0.069 0.931 42 H 0.096 0.904 43 H 0.219 0.781 44 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -6.269 15.298 -4.881 17.238 hybrid contribution 0.490 -1.490 0.228 1.585 sum -5.779 13.808 -4.653 15.675 Atomic orbital electron populations 1.21861 0.96752 1.01140 1.01372 1.21413 0.94319 0.95479 1.03530 1.21764 0.97487 0.96316 0.96739 0.91371 1.21833 0.98935 0.80635 0.98956 1.48101 1.08911 1.06330 1.67892 1.17643 0.86473 0.83126 0.78253 1.90811 1.13757 1.85693 1.50185 1.20662 1.03240 0.98462 0.93086 1.18614 0.98174 0.93794 0.80609 1.91610 1.86656 1.88109 1.42401 1.22997 0.96553 0.91951 0.97733 1.67645 1.14009 1.33455 0.97658 1.23020 0.98025 0.89594 0.98458 1.18649 0.98947 0.91959 0.81451 1.91633 1.93355 1.78198 1.45341 1.21793 0.78592 0.99651 1.00850 1.22536 1.02060 0.99421 0.95002 1.20222 0.89657 0.90485 0.92833 0.92801 1.42469 1.19043 1.64057 1.10503 1.19160 0.93542 1.27349 0.97097 0.91281 1.24697 0.98520 1.01349 0.95983 1.69631 1.38168 1.47931 1.02234 0.86320 0.84315 0.79202 0.76611 1.21366 1.21775 1.21329 0.93053 0.92810 0.93327 0.91844 0.90386 0.90078 0.89259 0.80069 0.79983 0.92178 0.88990 0.93119 0.90420 0.78109 0.93418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.05 9.67 37.16 0.36 -1.69 16 2 C -0.11 -1.70 5.19 -26.73 -0.14 -1.84 16 3 C -0.10 -1.64 2.14 -90.50 -0.19 -1.84 16 4 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 5 C 0.12 1.97 5.03 -3.71 -0.02 1.95 16 6 N -0.58 -9.59 2.97 -173.88 -0.52 -10.11 16 7 C 0.56 9.40 6.62 -12.33 -0.08 9.31 16 8 O -0.53 -10.26 16.52 5.32 0.09 -10.18 16 9 C -0.14 -1.95 3.68 -104.55 -0.38 -2.33 16 10 C 0.11 1.29 7.19 -38.81 -0.28 1.01 16 11 F -0.11 -1.37 16.92 2.25 0.04 -1.33 16 12 C 0.07 0.61 11.16 -17.51 -0.20 0.41 16 13 N -0.42 -4.13 10.33 -13.18 -0.14 -4.26 16 14 C 0.07 0.65 11.16 -17.51 -0.20 0.45 16 15 C 0.11 1.38 7.34 -38.80 -0.28 1.09 16 16 F -0.11 -1.47 16.92 2.25 0.04 -1.43 16 17 C 0.11 1.82 6.08 -3.71 -0.02 1.80 16 18 C -0.15 -2.41 5.78 -26.61 -0.15 -2.57 16 19 C 0.18 3.22 2.53 -67.89 -0.17 3.05 16 20 H 0.05 1.00 8.08 -51.93 -0.42 0.58 16 21 N -0.72 -16.01 3.72 -53.38 -0.20 -16.21 16 22 C -0.24 -6.11 9.93 -15.06 -0.15 -6.26 16 23 H 0.07 1.72 7.83 -52.48 -0.41 1.31 16 24 C -0.01 -0.25 5.50 -17.43 -0.10 -0.34 16 25 N -0.93 -26.59 13.06 55.49 0.72 -25.86 16 26 Si 0.90 21.43 29.55 -169.99 -5.02 16.41 16 27 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 28 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 29 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 30 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.05 0.72 6.70 -51.93 -0.35 0.37 16 32 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.08 1.41 7.70 -51.93 -0.40 1.01 16 35 H 0.08 1.49 6.64 -51.93 -0.34 1.15 16 36 H 0.09 1.49 5.72 -51.93 -0.30 1.20 16 37 H 0.18 1.07 8.06 -52.49 -0.42 0.64 16 38 H 0.18 1.17 8.06 -52.49 -0.42 0.75 16 39 H 0.06 0.85 6.22 -51.93 -0.32 0.53 16 40 H 0.09 1.72 7.74 -51.93 -0.40 1.32 16 41 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 43 H 0.38 9.21 5.94 -40.82 -0.24 8.96 16 44 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 LS Contribution 366.14 15.07 5.52 5.52 Total: -1.00 -29.92 366.14 -7.18 -37.10 By element: Atomic # 1 Polarization: 13.84 SS G_CDS: -5.70 Total: 8.14 kcal Atomic # 6 Polarization: 4.21 SS G_CDS: -2.01 Total: 2.21 kcal Atomic # 7 Polarization: -56.31 SS G_CDS: -0.13 Total: -56.44 kcal Atomic # 8 Polarization: -10.26 SS G_CDS: 0.09 Total: -10.18 kcal Atomic # 9 Polarization: -2.83 SS G_CDS: 0.08 Total: -2.76 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -29.92 -7.18 -37.10 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037856396.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.080 kcal (2) G-P(sol) polarization free energy of solvation -29.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.097 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds