Wall clock time and date at job start Tue Mar 31 2020 22:18:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.46833 * 2 1 4 4 H 1.09002 * 109.49725 * 304.93757 * 3 2 1 5 5 C 1.53192 * 109.49579 * 65.00058 * 3 2 1 6 6 N 1.46927 * 108.77318 * 174.61998 * 5 3 2 7 7 C 1.34773 * 120.63516 * 126.41107 * 6 5 3 8 8 O 1.21555 * 119.99820 * 359.97438 * 7 6 5 9 9 C 1.47851 * 120.00256 * 179.97438 * 7 6 5 10 10 C 1.40121 * 120.95888 * 89.72452 * 9 7 6 11 11 F 1.35105 * 120.51798 * 359.97438 * 10 9 7 12 12 C 1.38428 * 118.96028 * 179.77775 * 10 9 7 13 13 N 1.31776 * 120.92737 * 0.50741 * 12 10 9 14 14 C 1.31765 * 122.13947 * 359.73868 * 13 12 10 15 15 C 1.38434 * 120.93332 * 0.02562 * 14 13 12 16 16 F 1.35100 * 120.52061 * 179.97438 * 15 14 13 17 17 C 1.46926 * 118.73580 * 306.38910 * 6 5 3 18 18 C 1.53192 * 108.77820 * 53.60911 * 17 6 5 19 19 C 1.53033 * 109.31270 * 305.36633 * 18 17 6 20 20 H 1.09004 * 109.45285 * 181.37911 * 19 18 17 21 21 N 1.46502 * 109.46177 * 301.34300 * 19 18 17 22 22 C 1.36934 * 119.99932 * 275.07154 * 21 19 18 23 23 H 1.08006 * 120.00240 * 359.97438 * 22 21 19 24 24 C 1.38812 * 120.00092 * 179.97438 * 22 21 19 25 25 N 1.31612 * 120.00084 * 359.97438 * 24 22 21 26 26 Si 1.86802 * 120.00127 * 179.97438 * 24 22 21 27 27 H 1.48500 * 109.47151 * 59.99821 * 26 24 22 28 28 H 1.48497 * 109.47378 * 180.02562 * 26 24 22 29 29 H 1.48508 * 109.47182 * 299.99985 * 26 24 22 30 30 H 1.09006 * 109.47260 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47560 * 299.99824 * 1 2 3 32 32 H 1.09002 * 109.47557 * 60.00450 * 1 2 3 33 33 H 1.08992 * 109.47087 * 240.00095 * 2 1 3 34 34 H 1.09000 * 109.47039 * 119.99548 * 2 1 3 35 35 H 1.08997 * 109.58972 * 54.82989 * 5 3 2 36 36 H 1.09001 * 109.70306 * 294.47368 * 5 3 2 37 37 H 1.07995 * 119.53894 * 180.26744 * 12 10 9 38 38 H 1.08002 * 119.53268 * 180.02562 * 14 13 12 39 39 H 1.09006 * 109.58406 * 173.39827 * 17 6 5 40 40 H 1.09002 * 109.59019 * 293.81816 * 17 6 5 41 41 H 1.09000 * 109.49511 * 65.31256 * 18 17 6 42 42 H 1.08995 * 109.49883 * 185.40976 * 18 17 6 43 43 H 0.96994 * 120.00060 * 95.06337 * 21 19 18 44 44 H 0.97004 * 120.00333 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6064 1.9817 -0.8423 5 6 1.6349 2.1280 1.3088 6 7 2.2407 3.4660 1.3490 7 6 1.4804 4.5579 1.5633 8 8 0.2813 4.4413 1.7253 9 6 2.1046 5.8976 1.6016 10 6 2.2433 6.6618 0.4353 11 9 1.8076 6.1867 -0.7520 12 6 2.8299 7.9128 0.5195 13 7 3.2631 8.3815 1.6723 14 6 3.1576 7.6953 2.7922 15 6 2.5803 6.4371 2.8041 16 9 2.4769 5.7405 3.9571 17 6 3.6912 3.5909 1.1515 18 6 4.0732 2.8890 -0.1555 19 6 3.5655 1.4457 -0.1220 20 1 3.8573 0.9368 -1.0407 21 7 4.1485 0.7497 1.0277 22 6 5.3868 0.1745 0.9240 23 1 5.9336 0.2336 -0.0056 24 6 5.9395 -0.4845 2.0135 25 7 5.2735 -0.5562 3.1464 26 14 7.6285 -1.2697 1.8718 27 1 8.6321 -0.2280 1.5358 28 1 7.9886 -1.9061 3.1643 29 1 7.6074 -2.2999 0.8023 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3634 0.5138 -0.8900 33 1 1.8933 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 1.9911 1.5400 2.1547 36 1 0.5496 2.2167 1.3566 37 1 2.9374 8.5115 -0.3729 38 1 3.5267 8.1204 3.7139 39 1 3.9626 4.6450 1.0930 40 1 4.2152 3.1223 1.9846 41 1 3.6206 3.4144 -0.9964 42 1 5.1576 2.8907 -0.2659 43 1 3.6574 0.6964 1.8624 44 1 5.6595 -1.0170 3.9077 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001037856396.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:18:45 Heat of formation + Delta-G solvation = -91.638906 kcal Electronic energy + Delta-G solvation = -30964.627090 eV Core-core repulsion = 26552.656027 eV Total energy + Delta-G solvation = -4411.971062 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -50.37875 -50.33927 -41.88502 -40.81528 -39.33446 -36.08819 -35.43186 -33.82666 -33.45135 -31.96639 -31.12269 -30.06395 -27.42293 -25.78914 -25.19303 -25.11394 -24.79626 -22.30693 -21.62032 -20.09167 -19.43618 -19.36814 -19.27500 -18.82221 -17.95762 -17.21419 -17.19282 -16.81222 -16.66466 -16.65142 -16.11265 -16.00321 -15.63294 -15.46135 -14.99823 -14.86496 -14.86470 -14.66017 -14.48342 -14.37857 -14.14281 -13.72430 -13.36690 -13.19518 -13.01106 -12.82144 -12.69301 -12.45992 -12.27416 -12.16273 -11.91079 -11.81387 -11.57109 -11.48356 -11.20864 -11.14157 -10.97272 -10.79937 -10.18286 -9.86031 -8.94472 -7.88750 -5.15500 -0.70480 -0.52952 1.01909 1.50230 1.51101 1.56970 1.61020 2.13827 2.32590 2.59649 2.73125 2.84217 3.15851 3.42048 3.44607 3.65166 3.70054 3.78992 3.89897 3.98432 4.10652 4.18485 4.23060 4.25315 4.37164 4.41017 4.50401 4.58406 4.60349 4.71686 4.79409 4.93977 4.95151 5.09362 5.13940 5.18845 5.20225 5.21121 5.34975 5.44403 5.56291 5.60400 6.06694 6.32279 6.36293 6.65702 7.40351 8.15044 8.39026 9.34211 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.011589 B = 0.004095 C = 0.003534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2415.553040 B = 6836.441783 C = 7921.409341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.104 4.104 3 C -0.091 4.091 4 H 0.086 0.914 5 C 0.122 3.878 6 N -0.583 5.583 7 C 0.559 3.441 8 O -0.561 6.561 9 C -0.163 4.163 10 C 0.102 3.898 11 F -0.116 7.116 12 C 0.090 3.910 13 N -0.423 5.423 14 C 0.088 3.912 15 C 0.094 3.906 16 F -0.123 7.123 17 C 0.122 3.878 18 C -0.140 4.140 19 C 0.173 3.827 20 H 0.054 0.946 21 N -0.724 5.724 22 C -0.228 4.228 23 H 0.076 0.924 24 C -0.070 4.070 25 N -0.969 5.969 26 Si 0.963 3.037 27 H -0.279 1.279 28 H -0.303 1.303 29 H -0.282 1.282 30 H 0.061 0.939 31 H 0.048 0.952 32 H 0.063 0.937 33 H 0.066 0.934 34 H 0.046 0.954 35 H 0.056 0.944 36 H 0.089 0.911 37 H 0.220 0.780 38 H 0.215 0.785 39 H 0.083 0.917 40 H 0.060 0.940 41 H 0.075 0.925 42 H 0.073 0.927 43 H 0.373 0.627 44 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.669 17.008 -6.894 19.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.143 4.143 3 C -0.111 4.111 4 H 0.105 0.895 5 C 0.000 4.000 6 N -0.313 5.313 7 C 0.345 3.655 8 O -0.441 6.441 9 C -0.175 4.175 10 C 0.080 3.920 11 F -0.094 7.094 12 C -0.068 4.068 13 N -0.129 5.129 14 C -0.070 4.070 15 C 0.071 3.929 16 F -0.101 7.101 17 C 0.000 4.000 18 C -0.181 4.181 19 C 0.064 3.936 20 H 0.072 0.928 21 N -0.365 5.365 22 C -0.360 4.360 23 H 0.094 0.906 24 C -0.262 4.262 25 N -0.620 5.620 26 Si 0.793 3.207 27 H -0.206 1.206 28 H -0.230 1.230 29 H -0.208 1.208 30 H 0.080 0.920 31 H 0.067 0.933 32 H 0.082 0.918 33 H 0.085 0.915 34 H 0.065 0.935 35 H 0.074 0.926 36 H 0.107 0.893 37 H 0.237 0.763 38 H 0.232 0.768 39 H 0.102 0.898 40 H 0.079 0.921 41 H 0.094 0.906 42 H 0.091 0.909 43 H 0.206 0.794 44 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -5.757 17.621 -6.865 19.768 hybrid contribution 0.289 -2.118 0.767 2.271 sum -5.468 15.503 -6.098 17.533 Atomic orbital electron populations 1.21797 0.94767 1.02045 1.01836 1.21335 0.96043 0.94819 1.02054 1.21672 0.96004 0.96700 0.96732 0.89549 1.21696 0.98822 0.80888 0.98549 1.48139 1.09058 1.06294 1.67767 1.18102 0.86123 0.84216 0.77021 1.90778 1.15278 1.86484 1.51562 1.20597 1.04838 0.97259 0.94838 1.18768 0.99039 0.94487 0.79715 1.91594 1.86896 1.88335 1.42564 1.23581 0.93803 0.90701 0.98718 1.67819 1.14094 1.33162 0.97866 1.23495 0.95839 0.88000 0.99625 1.18901 1.00412 0.93018 0.80555 1.91594 1.93686 1.78758 1.46087 1.21665 0.78039 1.00750 0.99566 1.22405 1.01820 0.98005 0.95844 1.20441 0.90892 0.91171 0.91092 0.92801 1.42574 1.18265 1.64339 1.11322 1.19525 0.94222 1.25449 0.96809 0.90568 1.25366 1.01715 1.03115 0.96048 1.69792 1.39626 1.49728 1.02829 0.85372 0.80987 0.78439 0.75889 1.20576 1.22971 1.20828 0.92004 0.93331 0.91790 0.91543 0.93527 0.92555 0.89267 0.76310 0.76837 0.89833 0.92148 0.90611 0.90879 0.79357 0.94389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.79 9.67 71.98 0.70 -3.10 16 2 C -0.10 -3.24 5.19 30.60 0.16 -3.08 16 3 C -0.09 -2.87 2.14 -10.72 -0.02 -2.90 16 4 H 0.09 2.46 8.14 -2.39 -0.02 2.44 16 5 C 0.12 4.20 5.03 86.36 0.43 4.63 16 6 N -0.58 -19.33 2.97 -822.30 -2.44 -21.78 16 7 C 0.56 18.77 6.62 86.79 0.57 19.35 16 8 O -0.56 -22.21 16.52 -3.89 -0.06 -22.28 16 9 C -0.16 -4.31 3.68 -19.82 -0.07 -4.38 16 10 C 0.10 2.15 7.19 22.77 0.16 2.31 16 11 F -0.12 -2.62 16.92 44.97 0.76 -1.86 16 12 C 0.09 1.32 11.16 84.75 0.95 2.26 16 13 N -0.42 -6.73 10.33 -195.62 -2.02 -8.75 16 14 C 0.09 1.44 11.16 84.75 0.95 2.39 16 15 C 0.09 2.18 7.34 22.77 0.17 2.35 16 16 F -0.12 -3.39 16.92 44.97 0.76 -2.63 16 17 C 0.12 3.88 6.08 86.36 0.53 4.41 16 18 C -0.14 -4.35 5.78 30.67 0.18 -4.17 16 19 C 0.17 6.15 2.53 45.02 0.11 6.26 16 20 H 0.05 1.94 8.08 -2.38 -0.02 1.92 16 21 N -0.72 -32.87 3.72 -322.81 -1.20 -34.07 16 22 C -0.23 -11.65 9.93 84.03 0.83 -10.82 16 23 H 0.08 3.73 7.83 -2.91 -0.02 3.71 16 24 C -0.07 -3.82 5.50 84.86 0.47 -3.36 16 25 N -0.97 -57.12 13.06 21.65 0.28 -56.84 16 26 Si 0.96 44.57 29.55 68.60 2.03 46.60 16 27 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 28 H -0.30 -14.47 7.11 99.48 0.71 -13.76 16 29 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 30 H 0.06 1.46 8.14 -2.38 -0.02 1.44 16 31 H 0.05 1.30 6.70 -2.39 -0.02 1.28 16 32 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 34 H 0.05 1.74 7.70 -2.39 -0.02 1.72 16 35 H 0.06 2.21 6.64 -2.39 -0.02 2.20 16 36 H 0.09 3.06 5.72 -2.39 -0.01 3.05 16 37 H 0.22 1.46 8.06 -2.91 -0.02 1.44 16 38 H 0.22 2.00 8.06 -2.91 -0.02 1.98 16 39 H 0.08 2.26 6.22 -2.38 -0.01 2.25 16 40 H 0.06 2.33 7.74 -2.39 -0.02 2.31 16 41 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 42 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 43 H 0.37 18.68 5.94 -92.71 -0.55 18.13 16 44 H 0.25 14.44 8.31 -92.71 -0.77 13.66 16 Total: -1.00 -66.33 366.14 4.71 -61.62 By element: Atomic # 1 Polarization: 27.32 SS G_CDS: 0.50 Total: 27.82 kcal Atomic # 6 Polarization: 6.05 SS G_CDS: 6.11 Total: 12.15 kcal Atomic # 7 Polarization: -116.05 SS G_CDS: -5.38 Total: -121.43 kcal Atomic # 8 Polarization: -22.21 SS G_CDS: -0.06 Total: -22.28 kcal Atomic # 9 Polarization: -6.00 SS G_CDS: 1.52 Total: -4.48 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.60 kcal Total: -66.33 4.71 -61.62 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037856396.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.014 kcal (2) G-P(sol) polarization free energy of solvation -66.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds