Wall clock time and date at job start Tue Mar 31 2020 22:18:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 H 1.09001 * 109.50009 * 55.00018 * 3 2 1 5 5 C 1.53194 * 109.50138 * 294.93716 * 3 2 1 6 6 N 1.46932 * 108.77581 * 185.44486 * 5 3 2 7 7 C 1.34775 * 120.60190 * 233.57634 * 6 5 3 8 8 O 1.21550 * 120.00166 * 359.97438 * 7 6 5 9 9 C 1.47849 * 119.99838 * 179.97438 * 7 6 5 10 10 C 1.40130 * 120.95798 * 89.72284 * 9 7 6 11 11 F 1.35103 * 120.51499 * 0.02562 * 10 9 7 12 12 C 1.38422 * 118.95940 * 179.71039 * 10 9 7 13 13 N 1.31777 * 120.93196 * 0.57703 * 12 10 9 14 14 C 1.31766 * 122.13483 * 359.71571 * 13 12 10 15 15 C 1.38427 * 120.93602 * 359.97438 * 14 13 12 16 16 F 1.35098 * 120.52358 * 180.02562 * 15 14 13 17 17 C 1.46921 * 118.76452 * 53.55333 * 6 5 3 18 18 C 1.53197 * 108.77802 * 306.41353 * 17 6 5 19 19 C 1.53043 * 109.49990 * 175.06370 * 3 2 1 20 20 H 1.08992 * 109.46099 * 301.33323 * 19 3 2 21 21 N 1.46493 * 109.45914 * 61.31492 * 19 3 2 22 22 C 1.36939 * 120.00191 * 205.00247 * 21 19 3 23 23 H 1.08001 * 119.99685 * 359.97438 * 22 21 19 24 24 C 1.38813 * 120.00338 * 179.97438 * 22 21 19 25 25 N 1.31612 * 119.99741 * 359.97438 * 24 22 21 26 26 Si 1.86796 * 119.99861 * 179.97438 * 24 22 21 27 27 H 1.48504 * 109.47554 * 359.97438 * 26 24 22 28 28 H 1.48503 * 109.47028 * 119.99873 * 26 24 22 29 29 H 1.48500 * 109.47204 * 239.99592 * 26 24 22 30 30 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 31 31 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 32 32 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 34 34 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 35 35 H 1.09004 * 109.58231 * 305.20237 * 5 3 2 36 36 H 1.09002 * 109.58374 * 65.61748 * 5 3 2 37 37 H 1.08008 * 119.53935 * 180.29670 * 12 10 9 38 38 H 1.08004 * 119.52912 * 179.97438 * 14 13 12 39 39 H 1.08998 * 109.59002 * 186.62650 * 17 6 5 40 40 H 1.08998 * 109.70306 * 66.26919 * 17 6 5 41 41 H 1.08999 * 109.49709 * 294.68575 * 18 17 6 42 42 H 1.08995 * 109.49808 * 174.58545 * 18 17 6 43 43 H 0.97000 * 120.00431 * 24.99502 * 21 19 3 44 44 H 0.97000 * 119.99732 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6057 1.9819 0.8417 5 6 1.6365 2.1275 -1.3094 6 7 2.2438 3.4649 -1.3501 7 6 1.4842 4.5570 -1.5659 8 8 0.2853 4.4409 -1.7294 9 6 2.1091 5.8964 -1.6036 10 6 2.5915 6.4332 -2.8047 11 9 2.4939 5.7341 -3.9567 12 6 3.1636 7.6936 -2.7936 13 7 3.2676 8.3804 -1.6738 14 6 2.8330 7.9121 -0.5214 15 6 2.2413 6.6634 -0.4384 16 9 1.7982 6.1916 0.7475 17 6 3.6941 3.5892 -1.1507 18 6 4.0739 2.8880 0.1573 19 6 3.5654 1.4448 0.1241 20 1 3.8558 0.9364 1.0435 21 7 4.1497 0.7481 -1.0245 22 6 5.3876 0.1723 -0.9188 23 1 5.9333 0.2321 0.0112 24 6 5.9410 -0.4884 -2.0070 25 7 5.2756 -0.5617 -3.1402 26 14 7.6299 -1.2732 -1.8630 27 1 8.1642 -1.0509 -0.4953 28 1 7.5218 -2.7315 -2.1217 29 1 8.5468 -0.6607 -2.8577 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 1.8933 -0.5139 0.8900 34 1 1.8934 -0.5138 -0.8899 35 1 1.9931 1.5389 -2.1547 36 1 0.5512 2.2168 -1.3557 37 1 3.5342 8.1184 -3.7149 38 1 2.9401 8.5109 0.3710 39 1 3.9660 4.6431 -1.0926 40 1 4.2208 3.1212 -1.9824 41 1 3.6204 3.4143 0.9972 42 1 5.1581 2.8892 0.2692 43 1 3.6596 0.6946 -1.8599 44 1 5.6622 -1.0237 -3.9005 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037856397.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:18:50 Heat of formation + Delta-G solvation = -74.362601 kcal Electronic energy + Delta-G solvation = -30963.257163 eV Core-core repulsion = 26552.035257 eV Total energy + Delta-G solvation = -4411.221906 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.44565 -49.39220 -40.74738 -39.75108 -37.93350 -34.64776 -33.83366 -32.83854 -31.77423 -31.15945 -29.54826 -28.63694 -26.18586 -24.36231 -23.95603 -23.86882 -23.51648 -20.96674 -20.43869 -18.76283 -18.50943 -18.38315 -17.65490 -17.34242 -16.84483 -16.26852 -16.13406 -15.76389 -15.71430 -15.06661 -14.63872 -14.58683 -14.20637 -14.07936 -14.06362 -13.77149 -13.55983 -13.35382 -13.30128 -13.13588 -12.63820 -12.44226 -12.33153 -11.88779 -11.49717 -11.17365 -11.06299 -10.87829 -10.83945 -10.69553 -10.37750 -10.33082 -10.22892 -10.15059 -9.88047 -9.78414 -9.61967 -9.37500 -8.99117 -8.44710 -7.04014 -5.84281 -3.13219 0.22534 0.27480 2.29420 2.80721 2.97916 3.21561 3.37774 3.44180 3.46169 3.59110 3.86274 4.02761 4.26007 4.52734 4.53215 4.95126 5.02855 5.04561 5.18443 5.24609 5.30073 5.37588 5.44090 5.53275 5.63380 5.70431 5.72763 5.83890 5.97885 5.99784 6.06356 6.08503 6.25201 6.28636 6.35066 6.46188 6.51594 6.62404 6.67502 6.84190 6.91115 7.14910 7.38945 7.64418 7.97775 8.33875 9.45851 10.01320 10.36431 11.38073 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.011592 B = 0.004095 C = 0.003533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2414.902786 B = 6836.230765 C = 7923.546463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.109 4.109 3 C -0.103 4.103 4 H 0.068 0.932 5 C 0.118 3.882 6 N -0.582 5.582 7 C 0.560 3.440 8 O -0.527 6.527 9 C -0.142 4.142 10 C 0.112 3.888 11 F -0.107 7.107 12 C 0.068 3.932 13 N -0.421 5.421 14 C 0.066 3.934 15 C 0.111 3.889 16 F -0.110 7.110 17 C 0.113 3.887 18 C -0.149 4.149 19 C 0.179 3.821 20 H 0.054 0.946 21 N -0.719 5.719 22 C -0.239 4.239 23 H 0.070 0.930 24 C -0.010 4.010 25 N -0.931 5.931 26 Si 0.904 3.096 27 H -0.281 1.281 28 H -0.292 1.292 29 H -0.292 1.292 30 H 0.053 0.947 31 H 0.048 0.952 32 H 0.050 0.950 33 H 0.063 0.937 34 H 0.077 0.923 35 H 0.081 0.919 36 H 0.089 0.911 37 H 0.183 0.817 38 H 0.182 0.818 39 H 0.060 0.940 40 H 0.092 0.908 41 H 0.050 0.950 42 H 0.077 0.923 43 H 0.384 0.616 44 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.184 14.751 5.016 16.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.147 4.147 3 C -0.123 4.123 4 H 0.086 0.914 5 C -0.004 4.004 6 N -0.312 5.312 7 C 0.345 3.655 8 O -0.404 6.404 9 C -0.155 4.155 10 C 0.090 3.910 11 F -0.085 7.085 12 C -0.091 4.091 13 N -0.128 5.128 14 C -0.092 4.092 15 C 0.088 3.912 16 F -0.088 7.088 17 C -0.009 4.009 18 C -0.190 4.190 19 C 0.068 3.932 20 H 0.072 0.928 21 N -0.361 5.361 22 C -0.370 4.370 23 H 0.088 0.912 24 C -0.206 4.206 25 N -0.579 5.579 26 Si 0.735 3.265 27 H -0.206 1.206 28 H -0.219 1.219 29 H -0.220 1.220 30 H 0.072 0.928 31 H 0.067 0.933 32 H 0.070 0.930 33 H 0.082 0.918 34 H 0.096 0.904 35 H 0.099 0.901 36 H 0.108 0.892 37 H 0.200 0.800 38 H 0.199 0.801 39 H 0.078 0.922 40 H 0.110 0.890 41 H 0.069 0.931 42 H 0.096 0.904 43 H 0.219 0.781 44 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -6.280 15.344 4.951 17.303 hybrid contribution 0.484 -1.496 -0.253 1.593 sum -5.796 13.848 4.698 15.730 Atomic orbital electron populations 1.21861 0.96751 1.01142 1.01372 1.21412 0.94322 0.95478 1.03532 1.21766 0.97489 0.96324 0.96745 0.91370 1.21838 0.98917 0.80656 0.98948 1.48097 1.08920 1.06340 1.67871 1.17642 0.86471 0.83124 0.78255 1.90810 1.13768 1.85692 1.50165 1.20666 1.03198 0.98459 0.93132 1.18649 0.98946 0.91921 0.81495 1.91635 1.93397 1.78072 1.45424 1.23021 0.98077 0.89547 0.98459 1.67648 1.14012 1.33452 0.97651 1.22995 0.96506 0.91991 0.97742 1.18612 0.98104 0.93815 0.80653 1.91608 1.86417 1.88218 1.42531 1.21782 0.78608 0.99661 1.00827 1.22538 1.02064 0.99418 0.94996 1.20223 0.89651 0.90483 0.92841 0.92792 1.42486 1.19113 1.63993 1.10507 1.19254 0.93522 1.27077 0.97147 0.91163 1.24701 0.98543 1.01378 0.96000 1.69653 1.38031 1.47954 1.02292 0.86177 0.84237 0.78948 0.77145 1.20626 1.21931 1.21970 0.92816 0.93320 0.93049 0.91841 0.90388 0.90066 0.89248 0.79982 0.80068 0.92188 0.88994 0.93118 0.90419 0.78113 0.93523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.05 9.67 37.16 0.36 -1.69 16 2 C -0.11 -1.70 5.19 -26.74 -0.14 -1.84 16 3 C -0.10 -1.64 2.14 -90.50 -0.19 -1.84 16 4 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 5 C 0.12 1.97 5.03 -3.71 -0.02 1.95 16 6 N -0.58 -9.58 2.97 -173.87 -0.52 -10.10 16 7 C 0.56 9.39 6.62 -12.33 -0.08 9.31 16 8 O -0.53 -10.26 16.52 5.32 0.09 -10.17 16 9 C -0.14 -1.95 3.67 -104.55 -0.38 -2.33 16 10 C 0.11 1.37 7.34 -38.80 -0.28 1.09 16 11 F -0.11 -1.47 16.92 2.25 0.04 -1.43 16 12 C 0.07 0.64 11.16 -17.51 -0.20 0.45 16 13 N -0.42 -4.12 10.33 -13.18 -0.14 -4.26 16 14 C 0.07 0.61 11.16 -17.51 -0.20 0.41 16 15 C 0.11 1.29 7.20 -38.81 -0.28 1.01 16 16 F -0.11 -1.36 16.92 2.25 0.04 -1.33 16 17 C 0.11 1.82 6.08 -3.71 -0.02 1.80 16 18 C -0.15 -2.41 5.78 -26.61 -0.15 -2.56 16 19 C 0.18 3.22 2.53 -67.89 -0.17 3.04 16 20 H 0.05 1.00 8.08 -51.93 -0.42 0.59 16 21 N -0.72 -16.00 3.72 -53.39 -0.20 -16.20 16 22 C -0.24 -6.07 9.93 -15.06 -0.15 -6.22 16 23 H 0.07 1.76 7.83 -52.49 -0.41 1.35 16 24 C -0.01 -0.27 5.50 -17.43 -0.10 -0.37 16 25 N -0.93 -26.59 13.06 55.49 0.72 -25.86 16 26 Si 0.90 21.44 29.55 -169.99 -5.02 16.42 16 27 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 28 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 29 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 30 H 0.05 0.72 6.70 -51.93 -0.35 0.37 16 31 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.08 1.41 7.70 -51.93 -0.40 1.01 16 35 H 0.08 1.49 6.64 -51.93 -0.34 1.15 16 36 H 0.09 1.50 5.72 -51.93 -0.30 1.20 16 37 H 0.18 1.17 8.06 -52.48 -0.42 0.75 16 38 H 0.18 1.06 8.06 -52.48 -0.42 0.64 16 39 H 0.06 0.85 6.23 -51.93 -0.32 0.52 16 40 H 0.09 1.72 7.74 -51.93 -0.40 1.32 16 41 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 43 H 0.38 9.20 5.94 -40.82 -0.24 8.96 16 44 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 LS Contribution 366.16 15.07 5.52 5.52 Total: -1.00 -29.98 366.16 -7.18 -37.16 By element: Atomic # 1 Polarization: 13.74 SS G_CDS: -5.71 Total: 8.03 kcal Atomic # 6 Polarization: 4.22 SS G_CDS: -2.01 Total: 2.22 kcal Atomic # 7 Polarization: -56.29 SS G_CDS: -0.13 Total: -56.41 kcal Atomic # 8 Polarization: -10.26 SS G_CDS: 0.09 Total: -10.17 kcal Atomic # 9 Polarization: -2.83 SS G_CDS: 0.08 Total: -2.76 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -29.98 -7.18 -37.16 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037856397.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.207 kcal (2) G-P(sol) polarization free energy of solvation -29.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds