Wall clock time and date at job start Tue Mar 31 2020 22:18:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 H 1.09001 * 109.50009 * 55.00018 * 3 2 1 5 5 C 1.53194 * 109.50138 * 294.93716 * 3 2 1 6 6 N 1.46932 * 108.77581 * 185.44486 * 5 3 2 7 7 C 1.34775 * 120.60190 * 233.57634 * 6 5 3 8 8 O 1.21550 * 120.00166 * 359.97438 * 7 6 5 9 9 C 1.47849 * 119.99838 * 179.97438 * 7 6 5 10 10 C 1.40130 * 120.95798 * 89.72284 * 9 7 6 11 11 F 1.35103 * 120.51499 * 0.02562 * 10 9 7 12 12 C 1.38422 * 118.95940 * 179.71039 * 10 9 7 13 13 N 1.31777 * 120.93196 * 0.57703 * 12 10 9 14 14 C 1.31766 * 122.13483 * 359.71571 * 13 12 10 15 15 C 1.38427 * 120.93602 * 359.97438 * 14 13 12 16 16 F 1.35098 * 120.52358 * 180.02562 * 15 14 13 17 17 C 1.46921 * 118.76452 * 53.55333 * 6 5 3 18 18 C 1.53197 * 108.77802 * 306.41353 * 17 6 5 19 19 C 1.53043 * 109.49990 * 175.06370 * 3 2 1 20 20 H 1.08992 * 109.46099 * 301.33323 * 19 3 2 21 21 N 1.46493 * 109.45914 * 61.31492 * 19 3 2 22 22 C 1.36939 * 120.00191 * 205.00247 * 21 19 3 23 23 H 1.08001 * 119.99685 * 359.97438 * 22 21 19 24 24 C 1.38813 * 120.00338 * 179.97438 * 22 21 19 25 25 N 1.31612 * 119.99741 * 359.97438 * 24 22 21 26 26 Si 1.86796 * 119.99861 * 179.97438 * 24 22 21 27 27 H 1.48504 * 109.47554 * 359.97438 * 26 24 22 28 28 H 1.48503 * 109.47028 * 119.99873 * 26 24 22 29 29 H 1.48500 * 109.47204 * 239.99592 * 26 24 22 30 30 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 31 31 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 32 32 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 34 34 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 35 35 H 1.09004 * 109.58231 * 305.20237 * 5 3 2 36 36 H 1.09002 * 109.58374 * 65.61748 * 5 3 2 37 37 H 1.08008 * 119.53935 * 180.29670 * 12 10 9 38 38 H 1.08004 * 119.52912 * 179.97438 * 14 13 12 39 39 H 1.08998 * 109.59002 * 186.62650 * 17 6 5 40 40 H 1.08998 * 109.70306 * 66.26919 * 17 6 5 41 41 H 1.08999 * 109.49709 * 294.68575 * 18 17 6 42 42 H 1.08995 * 109.49808 * 174.58545 * 18 17 6 43 43 H 0.97000 * 120.00431 * 24.99502 * 21 19 3 44 44 H 0.97000 * 119.99732 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6057 1.9819 0.8417 5 6 1.6365 2.1275 -1.3094 6 7 2.2438 3.4649 -1.3501 7 6 1.4842 4.5570 -1.5659 8 8 0.2853 4.4409 -1.7294 9 6 2.1091 5.8964 -1.6036 10 6 2.5915 6.4332 -2.8047 11 9 2.4939 5.7341 -3.9567 12 6 3.1636 7.6936 -2.7936 13 7 3.2676 8.3804 -1.6738 14 6 2.8330 7.9121 -0.5214 15 6 2.2413 6.6634 -0.4384 16 9 1.7982 6.1916 0.7475 17 6 3.6941 3.5892 -1.1507 18 6 4.0739 2.8880 0.1573 19 6 3.5654 1.4448 0.1241 20 1 3.8558 0.9364 1.0435 21 7 4.1497 0.7481 -1.0245 22 6 5.3876 0.1723 -0.9188 23 1 5.9333 0.2321 0.0112 24 6 5.9410 -0.4884 -2.0070 25 7 5.2756 -0.5617 -3.1402 26 14 7.6299 -1.2732 -1.8630 27 1 8.1642 -1.0509 -0.4953 28 1 7.5218 -2.7315 -2.1217 29 1 8.5468 -0.6607 -2.8577 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 1.8933 -0.5139 0.8900 34 1 1.8934 -0.5138 -0.8899 35 1 1.9931 1.5389 -2.1547 36 1 0.5512 2.2168 -1.3557 37 1 3.5342 8.1184 -3.7149 38 1 2.9401 8.5109 0.3710 39 1 3.9660 4.6431 -1.0926 40 1 4.2208 3.1212 -1.9824 41 1 3.6204 3.4143 0.9972 42 1 5.1581 2.8892 0.2692 43 1 3.6596 0.6946 -1.8599 44 1 5.6622 -1.0237 -3.9005 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001037856397.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:18:49 Heat of formation + Delta-G solvation = -91.883338 kcal Electronic energy + Delta-G solvation = -30964.016919 eV Core-core repulsion = 26552.035257 eV Total energy + Delta-G solvation = -4411.981662 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -50.37827 -50.34029 -41.88501 -40.81522 -39.33566 -36.09010 -35.43484 -33.82611 -33.45295 -31.96644 -31.12442 -30.06538 -27.42346 -25.79481 -25.19512 -25.11396 -24.79547 -22.30722 -21.62045 -20.09199 -19.43687 -19.36916 -19.27881 -18.82269 -17.95792 -17.21457 -17.19241 -16.81360 -16.66531 -16.65205 -16.11040 -16.01086 -15.62860 -15.46516 -14.99970 -14.86440 -14.86175 -14.66159 -14.48439 -14.37887 -14.15145 -13.72404 -13.36630 -13.19177 -13.00712 -12.89636 -12.69313 -12.46275 -12.27907 -12.05990 -11.91172 -11.81531 -11.57168 -11.49100 -11.20884 -11.14257 -10.98236 -10.81201 -10.18302 -9.86057 -8.94722 -7.89490 -5.16073 -0.70485 -0.52902 1.01930 1.48533 1.50377 1.58512 1.61036 2.13824 2.32649 2.59114 2.73166 2.84247 3.15883 3.42032 3.44392 3.65157 3.70041 3.78895 3.89876 3.98360 4.10719 4.18521 4.23055 4.25267 4.37182 4.41041 4.50491 4.58408 4.60285 4.71686 4.79355 4.93993 4.95203 5.09384 5.13940 5.18906 5.20220 5.21122 5.34969 5.44441 5.56419 5.60647 6.06676 6.32059 6.36307 6.65718 7.39983 8.14615 8.38422 9.33967 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.011592 B = 0.004095 C = 0.003533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2414.902786 B = 6836.230765 C = 7923.546463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.104 4.104 3 C -0.092 4.092 4 H 0.086 0.914 5 C 0.122 3.878 6 N -0.583 5.583 7 C 0.559 3.441 8 O -0.561 6.561 9 C -0.163 4.163 10 C 0.093 3.907 11 F -0.123 7.123 12 C 0.088 3.912 13 N -0.423 5.423 14 C 0.090 3.910 15 C 0.103 3.897 16 F -0.116 7.116 17 C 0.122 3.878 18 C -0.140 4.140 19 C 0.173 3.827 20 H 0.054 0.946 21 N -0.724 5.724 22 C -0.225 4.225 23 H 0.077 0.923 24 C -0.071 4.071 25 N -0.969 5.969 26 Si 0.962 3.038 27 H -0.266 1.266 28 H -0.301 1.301 29 H -0.299 1.299 30 H 0.048 0.952 31 H 0.063 0.937 32 H 0.061 0.939 33 H 0.066 0.934 34 H 0.046 0.954 35 H 0.056 0.944 36 H 0.089 0.911 37 H 0.215 0.785 38 H 0.221 0.779 39 H 0.083 0.917 40 H 0.060 0.940 41 H 0.075 0.925 42 H 0.073 0.927 43 H 0.373 0.627 44 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.698 17.065 6.989 19.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.143 4.143 3 C -0.111 4.111 4 H 0.105 0.895 5 C 0.000 4.000 6 N -0.313 5.313 7 C 0.345 3.655 8 O -0.441 6.441 9 C -0.175 4.175 10 C 0.071 3.929 11 F -0.101 7.101 12 C -0.070 4.070 13 N -0.129 5.129 14 C -0.068 4.068 15 C 0.080 3.920 16 F -0.094 7.094 17 C 0.000 4.000 18 C -0.181 4.181 19 C 0.064 3.936 20 H 0.072 0.928 21 N -0.365 5.365 22 C -0.357 4.357 23 H 0.095 0.905 24 C -0.263 4.263 25 N -0.620 5.620 26 Si 0.793 3.207 27 H -0.190 1.190 28 H -0.228 1.228 29 H -0.227 1.227 30 H 0.067 0.933 31 H 0.082 0.918 32 H 0.080 0.920 33 H 0.085 0.915 34 H 0.065 0.935 35 H 0.075 0.925 36 H 0.107 0.893 37 H 0.232 0.768 38 H 0.237 0.763 39 H 0.102 0.898 40 H 0.079 0.921 41 H 0.094 0.906 42 H 0.091 0.909 43 H 0.206 0.794 44 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -5.784 17.686 6.979 19.873 hybrid contribution 0.286 -2.130 -0.807 2.295 sum -5.499 15.556 6.172 17.616 Atomic orbital electron populations 1.21798 0.94771 1.02043 1.01837 1.21335 0.96042 0.94821 1.02059 1.21675 0.96011 0.96706 0.96735 0.89541 1.21700 0.98807 0.80908 0.98546 1.48136 1.09071 1.06301 1.67744 1.18100 0.86121 0.84214 0.77024 1.90777 1.15291 1.86484 1.51543 1.20600 1.04791 0.97259 0.94883 1.18901 1.00412 0.92979 0.80603 1.91595 1.93728 1.78635 1.46174 1.23495 0.95895 0.87956 0.99624 1.67822 1.14096 1.33159 0.97860 1.23580 0.93758 0.90739 0.98726 1.18766 0.98965 0.94502 0.79763 1.91592 1.86658 1.88443 1.42693 1.21656 0.78047 1.00767 0.99554 1.22408 1.01843 0.97992 0.95830 1.20443 0.90883 0.91173 0.91102 0.92777 1.42593 1.18333 1.64261 1.11329 1.19602 0.94178 1.25122 0.96812 0.90500 1.25363 1.01709 1.03165 0.96086 1.69805 1.39521 1.49771 1.02926 0.85235 0.80739 0.77337 0.77420 1.19033 1.22848 1.22690 0.93341 0.91778 0.92007 0.91528 0.93536 0.92548 0.89257 0.76842 0.76307 0.89841 0.92150 0.90607 0.90852 0.79359 0.94403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.79 9.67 71.98 0.70 -3.09 16 2 C -0.10 -3.24 5.19 30.59 0.16 -3.08 16 3 C -0.09 -2.87 2.14 -10.72 -0.02 -2.90 16 4 H 0.09 2.45 8.14 -2.39 -0.02 2.43 16 5 C 0.12 4.19 5.03 86.36 0.43 4.63 16 6 N -0.58 -19.30 2.97 -822.29 -2.44 -21.75 16 7 C 0.56 18.75 6.62 86.79 0.57 19.33 16 8 O -0.56 -22.19 16.52 -3.87 -0.06 -22.26 16 9 C -0.16 -4.30 3.67 -19.82 -0.07 -4.37 16 10 C 0.09 2.18 7.34 22.77 0.17 2.35 16 11 F -0.12 -3.39 16.92 44.97 0.76 -2.63 16 12 C 0.09 1.44 11.16 84.74 0.95 2.38 16 13 N -0.42 -6.72 10.33 -195.62 -2.02 -8.74 16 14 C 0.09 1.31 11.16 84.75 0.95 2.26 16 15 C 0.10 2.15 7.20 22.77 0.16 2.31 16 16 F -0.12 -2.61 16.92 44.97 0.76 -1.85 16 17 C 0.12 3.87 6.08 86.37 0.53 4.40 16 18 C -0.14 -4.33 5.78 30.68 0.18 -4.16 16 19 C 0.17 6.13 2.53 45.02 0.11 6.24 16 20 H 0.05 1.94 8.08 -2.39 -0.02 1.92 16 21 N -0.72 -32.82 3.72 -322.82 -1.20 -34.02 16 22 C -0.23 -11.49 9.93 84.03 0.83 -10.65 16 23 H 0.08 3.77 7.83 -2.91 -0.02 3.75 16 24 C -0.07 -3.87 5.50 84.86 0.47 -3.40 16 25 N -0.97 -57.17 13.06 21.65 0.28 -56.88 16 26 Si 0.96 44.62 29.55 68.60 2.03 46.64 16 27 H -0.27 -11.51 7.11 99.48 0.71 -10.81 16 28 H -0.30 -14.24 7.11 99.48 0.71 -13.54 16 29 H -0.30 -14.08 7.11 99.48 0.71 -13.37 16 30 H 0.05 1.29 6.70 -2.39 -0.02 1.28 16 31 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 32 H 0.06 1.46 8.14 -2.38 -0.02 1.44 16 33 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 34 H 0.05 1.74 7.70 -2.39 -0.02 1.72 16 35 H 0.06 2.21 6.64 -2.38 -0.02 2.20 16 36 H 0.09 3.06 5.72 -2.39 -0.01 3.05 16 37 H 0.22 2.00 8.06 -2.91 -0.02 1.98 16 38 H 0.22 1.46 8.06 -2.91 -0.02 1.43 16 39 H 0.08 2.26 6.23 -2.39 -0.01 2.24 16 40 H 0.06 2.32 7.74 -2.39 -0.02 2.31 16 41 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 42 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 43 H 0.37 18.66 5.94 -92.71 -0.55 18.11 16 44 H 0.25 14.36 8.31 -92.71 -0.77 13.59 16 Total: -1.00 -66.47 366.16 4.71 -61.77 By element: Atomic # 1 Polarization: 26.98 SS G_CDS: 0.50 Total: 27.48 kcal Atomic # 6 Polarization: 6.13 SS G_CDS: 6.11 Total: 12.24 kcal Atomic # 7 Polarization: -116.01 SS G_CDS: -5.38 Total: -121.39 kcal Atomic # 8 Polarization: -22.19 SS G_CDS: -0.06 Total: -22.26 kcal Atomic # 9 Polarization: -6.00 SS G_CDS: 1.52 Total: -4.48 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.64 kcal Total: -66.47 4.71 -61.77 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037856397.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.116 kcal (2) G-P(sol) polarization free energy of solvation -66.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds