Wall clock time and date at job start Tue Mar 31 2020 22:18:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.46858 * 2 1 4 4 H 1.08997 * 109.49805 * 54.93341 * 3 2 1 5 5 C 1.53196 * 109.49376 * 294.83238 * 3 2 1 6 6 N 1.46933 * 108.77261 * 185.41485 * 5 3 2 7 7 C 1.34773 * 120.63105 * 233.63114 * 6 5 3 8 8 O 1.21550 * 119.99646 * 0.02562 * 7 6 5 9 9 C 1.47852 * 119.99832 * 179.97438 * 7 6 5 10 10 C 1.40121 * 120.95759 * 89.72575 * 9 7 6 11 11 F 1.35106 * 120.52235 * 359.97438 * 10 9 7 12 12 C 1.38425 * 118.95860 * 179.75180 * 10 9 7 13 13 N 1.31769 * 120.93102 * 0.52514 * 12 10 9 14 14 C 1.31770 * 122.14023 * 359.72464 * 13 12 10 15 15 C 1.38427 * 120.92662 * 0.02562 * 14 13 12 16 16 F 1.35109 * 120.51841 * 179.97438 * 15 14 13 17 17 C 1.46926 * 118.73494 * 53.61115 * 6 5 3 18 18 C 1.53186 * 108.77645 * 306.38787 * 17 6 5 19 19 C 1.53038 * 109.31561 * 54.64154 * 18 17 6 20 20 H 1.09006 * 109.45055 * 58.63882 * 19 18 17 21 21 N 1.46496 * 109.46568 * 178.61475 * 19 18 17 22 22 C 1.36945 * 119.99718 * 275.06601 * 21 19 18 23 23 H 1.07997 * 119.99756 * 359.97438 * 22 21 19 24 24 C 1.38805 * 119.99878 * 179.97438 * 22 21 19 25 25 N 1.31624 * 120.00257 * 0.02562 * 24 22 21 26 26 Si 1.86803 * 119.99929 * 179.97438 * 24 22 21 27 27 H 1.48496 * 109.47187 * 179.97438 * 26 24 22 28 28 H 1.48494 * 109.47141 * 300.00154 * 26 24 22 29 29 H 1.48498 * 109.47018 * 60.00200 * 26 24 22 30 30 H 1.08992 * 109.47572 * 300.00122 * 1 2 3 31 31 H 1.09005 * 109.46559 * 60.00535 * 1 2 3 32 32 H 1.09002 * 109.46905 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.47264 * 239.99561 * 2 1 3 34 34 H 1.08996 * 109.47086 * 119.99692 * 2 1 3 35 35 H 1.09001 * 109.59097 * 305.20179 * 5 3 2 36 36 H 1.09002 * 109.58383 * 65.63096 * 5 3 2 37 37 H 1.07995 * 119.53779 * 180.25339 * 12 10 9 38 38 H 1.07993 * 119.53936 * 179.97438 * 14 13 12 39 39 H 1.08997 * 109.58642 * 66.18067 * 17 6 5 40 40 H 1.09004 * 109.58203 * 186.46371 * 17 6 5 41 41 H 1.08993 * 109.50239 * 294.68482 * 18 17 6 42 42 H 1.09002 * 109.49882 * 174.58706 * 18 17 6 43 43 H 0.96996 * 120.00499 * 95.06331 * 21 19 18 44 44 H 0.97001 * 119.99885 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6047 1.9823 0.8410 5 6 1.6385 2.1267 -1.3106 6 7 2.2451 3.4644 -1.3508 7 6 1.4856 4.5565 -1.5675 8 8 0.2869 4.4402 -1.7315 9 6 2.1106 5.8959 -1.6046 10 6 2.5942 6.4326 -2.8052 11 9 2.4988 5.7331 -3.9572 12 6 3.1670 7.6927 -2.7934 13 7 3.2695 8.3796 -1.6736 14 6 2.8330 7.9117 -0.5217 15 6 2.2415 6.6628 -0.4393 16 9 1.7973 6.1909 0.7462 17 6 3.6952 3.5887 -1.1499 18 6 4.0735 2.8882 0.1588 19 6 3.5652 1.4451 0.1258 20 1 4.0009 0.9263 -0.7282 21 7 3.9541 0.7622 1.3621 22 6 5.1923 0.1864 1.4660 23 1 5.8819 0.2355 0.6363 24 6 5.5609 -0.4602 2.6376 25 7 4.7202 -0.5204 3.6486 26 14 7.2496 -1.2462 2.7790 27 1 7.3960 -1.8669 4.1200 28 1 7.4000 -2.2880 1.7316 29 1 8.2956 -0.2077 2.5980 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 1.9965 1.5376 -2.1550 36 1 0.5532 2.2160 -1.3587 37 1 3.5391 8.1171 -3.7141 38 1 2.9389 8.5105 0.3707 39 1 4.2209 3.1189 -1.9812 40 1 3.9673 4.6428 -1.0945 41 1 3.6192 3.4148 0.9979 42 1 5.1577 2.8895 0.2719 43 1 3.3346 0.7178 2.1072 44 1 4.9778 -0.9727 4.4672 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037856398.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:18:54 Heat of formation + Delta-G solvation = -75.949086 kcal Electronic energy + Delta-G solvation = -30513.678082 eV Core-core repulsion = 26102.387381 eV Total energy + Delta-G solvation = -4411.290701 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -49.56003 -49.47321 -40.85676 -39.82356 -37.92967 -34.93127 -33.90341 -32.94221 -31.80432 -31.25052 -29.62843 -28.85263 -26.15786 -24.54819 -24.05089 -23.92957 -22.84274 -20.96902 -20.48507 -19.51239 -18.60932 -18.57363 -17.87678 -17.15951 -16.95518 -16.36392 -16.26302 -15.89102 -15.80889 -15.10683 -14.92694 -14.58751 -14.16883 -14.11700 -14.02172 -13.79102 -13.64940 -13.41453 -13.32644 -13.17744 -12.82308 -12.53354 -12.18758 -11.98595 -11.73559 -11.37394 -10.98798 -10.91604 -10.80772 -10.78936 -10.45033 -10.29867 -10.27829 -10.20906 -9.97278 -9.77295 -9.67244 -9.46592 -8.95612 -8.70311 -7.02377 -5.81993 -3.11343 0.11963 0.18268 2.13806 2.65312 2.86554 3.11107 3.39469 3.44472 3.45489 3.49509 3.76654 3.87820 4.16134 4.43643 4.53027 4.83192 4.90502 4.94599 5.12111 5.14589 5.20369 5.24406 5.35350 5.44869 5.54447 5.58858 5.60613 5.79326 5.88715 5.91897 6.03379 6.07831 6.21396 6.26240 6.29986 6.38540 6.43819 6.58741 6.73882 6.88653 6.96878 7.06519 7.17746 7.63502 7.80891 8.35862 9.47513 10.03812 10.38898 11.40185 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.013181 B = 0.003473 C = 0.003105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2123.732940 B = 8060.548147 C = 9016.663367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.111 4.111 3 C -0.105 4.105 4 H 0.072 0.928 5 C 0.119 3.881 6 N -0.588 5.588 7 C 0.563 3.437 8 O -0.522 6.522 9 C -0.145 4.145 10 C 0.109 3.891 11 F -0.110 7.110 12 C 0.067 3.933 13 N -0.419 5.419 14 C 0.069 3.931 15 C 0.114 3.886 16 F -0.106 7.106 17 C 0.106 3.894 18 C -0.151 4.151 19 C 0.184 3.816 20 H 0.049 0.951 21 N -0.719 5.719 22 C -0.241 4.241 23 H 0.069 0.931 24 C -0.010 4.010 25 N -0.931 5.931 26 Si 0.905 3.095 27 H -0.291 1.291 28 H -0.286 1.286 29 H -0.286 1.286 30 H 0.052 0.948 31 H 0.048 0.952 32 H 0.050 0.950 33 H 0.058 0.942 34 H 0.085 0.915 35 H 0.072 0.928 36 H 0.093 0.907 37 H 0.183 0.817 38 H 0.184 0.816 39 H 0.074 0.926 40 H 0.067 0.933 41 H 0.061 0.939 42 H 0.079 0.921 43 H 0.385 0.615 44 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.810 14.785 -12.576 19.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.149 4.149 3 C -0.125 4.125 4 H 0.090 0.910 5 C -0.003 4.003 6 N -0.319 5.319 7 C 0.348 3.652 8 O -0.398 6.398 9 C -0.158 4.158 10 C 0.087 3.913 11 F -0.089 7.089 12 C -0.091 4.091 13 N -0.126 5.126 14 C -0.090 4.090 15 C 0.091 3.909 16 F -0.084 7.084 17 C -0.017 4.017 18 C -0.192 4.192 19 C 0.073 3.927 20 H 0.067 0.933 21 N -0.359 5.359 22 C -0.373 4.373 23 H 0.087 0.913 24 C -0.206 4.206 25 N -0.579 5.579 26 Si 0.736 3.264 27 H -0.217 1.217 28 H -0.213 1.213 29 H -0.213 1.213 30 H 0.071 0.929 31 H 0.067 0.933 32 H 0.069 0.931 33 H 0.077 0.923 34 H 0.104 0.896 35 H 0.090 0.910 36 H 0.112 0.888 37 H 0.200 0.800 38 H 0.201 0.799 39 H 0.093 0.907 40 H 0.086 0.914 41 H 0.080 0.920 42 H 0.098 0.902 43 H 0.219 0.781 44 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -4.908 15.364 -12.676 20.514 hybrid contribution 0.402 -1.430 0.500 1.567 sum -4.505 13.934 -12.175 19.045 Atomic orbital electron populations 1.21852 0.96741 1.01148 1.01327 1.21450 0.94426 0.95419 1.03631 1.21803 0.97788 0.96464 0.96446 0.90991 1.21899 0.99569 0.80417 0.98429 1.48133 1.08794 1.06557 1.68427 1.17652 0.86462 0.83117 0.77959 1.90824 1.13699 1.85644 1.49669 1.20635 1.03501 0.98430 0.93194 1.18615 0.99383 0.92022 0.81310 1.91608 1.93561 1.78128 1.45573 1.23013 0.98164 0.89492 0.98472 1.67658 1.13940 1.33390 0.97658 1.23052 0.96143 0.91989 0.97772 1.18653 0.97705 0.93740 0.80767 1.91649 1.86209 1.88123 1.42413 1.21935 0.78894 1.00819 1.00084 1.22708 1.02483 0.99437 0.94604 1.20175 0.90695 0.90357 0.91432 0.93257 1.42387 1.16488 1.64383 1.12637 1.19157 0.91777 1.27692 0.98633 0.91286 1.24721 0.98107 1.01401 0.96385 1.69649 1.35264 1.48208 1.04759 0.86307 0.84109 0.79189 0.76778 1.21723 1.21274 1.21326 0.92923 0.93252 0.93054 0.92346 0.89610 0.90953 0.88824 0.80013 0.79889 0.90723 0.91446 0.91975 0.90232 0.78125 0.93418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.08 9.67 37.16 0.36 -1.72 16 2 C -0.11 -1.75 5.31 -26.73 -0.14 -1.89 16 3 C -0.11 -1.68 1.92 -90.49 -0.17 -1.86 16 4 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 5 C 0.12 1.70 5.33 -3.70 -0.02 1.68 16 6 N -0.59 -8.42 2.97 -173.87 -0.52 -8.94 16 7 C 0.56 8.54 6.62 -12.33 -0.08 8.46 16 8 O -0.52 -9.43 16.52 5.32 0.09 -9.34 16 9 C -0.14 -1.79 3.67 -104.55 -0.38 -2.18 16 10 C 0.11 1.13 7.34 -38.81 -0.28 0.84 16 11 F -0.11 -1.21 16.92 2.25 0.04 -1.17 16 12 C 0.07 0.54 11.16 -17.51 -0.20 0.35 16 13 N -0.42 -3.72 10.33 -13.19 -0.14 -3.86 16 14 C 0.07 0.60 11.16 -17.51 -0.20 0.40 16 15 C 0.11 1.27 7.20 -38.81 -0.28 0.99 16 16 F -0.11 -1.36 16.92 2.25 0.04 -1.33 16 17 C 0.11 1.39 6.34 -3.71 -0.02 1.37 16 18 C -0.15 -2.46 5.66 -26.62 -0.15 -2.61 16 19 C 0.18 3.35 2.19 -67.89 -0.15 3.20 16 20 H 0.05 0.92 8.08 -51.93 -0.42 0.50 16 21 N -0.72 -16.73 4.33 -53.38 -0.23 -16.96 16 22 C -0.24 -6.31 9.93 -15.06 -0.15 -6.45 16 23 H 0.07 1.75 7.83 -52.49 -0.41 1.34 16 24 C -0.01 -0.27 5.50 -17.43 -0.10 -0.36 16 25 N -0.93 -27.15 13.06 55.49 0.72 -26.42 16 26 Si 0.91 21.66 29.55 -169.99 -5.02 16.64 16 27 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 28 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 29 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 30 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.05 0.62 6.70 -51.93 -0.35 0.27 16 32 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 33 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.09 1.62 7.22 -51.93 -0.37 1.24 16 35 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 36 H 0.09 1.39 5.72 -51.93 -0.30 1.10 16 37 H 0.18 0.87 8.06 -52.49 -0.42 0.45 16 38 H 0.18 1.06 8.06 -52.49 -0.42 0.63 16 39 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 40 H 0.07 0.80 6.23 -51.93 -0.32 0.47 16 41 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 42 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 43 H 0.38 9.72 7.51 -40.82 -0.31 9.42 16 44 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 369.77 15.07 5.57 5.57 Total: -1.00 -30.93 369.77 -7.26 -38.19 By element: Atomic # 1 Polarization: 13.26 SS G_CDS: -5.84 Total: 7.41 kcal Atomic # 6 Polarization: 2.18 SS G_CDS: -1.97 Total: 0.22 kcal Atomic # 7 Polarization: -56.02 SS G_CDS: -0.16 Total: -56.18 kcal Atomic # 8 Polarization: -9.43 SS G_CDS: 0.09 Total: -9.34 kcal Atomic # 9 Polarization: -2.58 SS G_CDS: 0.08 Total: -2.50 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -30.93 -7.26 -38.19 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037856398.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.760 kcal (2) G-P(sol) polarization free energy of solvation -30.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds