Wall clock time and date at job start Tue Mar 31 2020 22:18:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.46858 * 2 1 4 4 H 1.08997 * 109.49805 * 54.93341 * 3 2 1 5 5 C 1.53196 * 109.49376 * 294.83238 * 3 2 1 6 6 N 1.46933 * 108.77261 * 185.41485 * 5 3 2 7 7 C 1.34773 * 120.63105 * 233.63114 * 6 5 3 8 8 O 1.21550 * 119.99646 * 0.02562 * 7 6 5 9 9 C 1.47852 * 119.99832 * 179.97438 * 7 6 5 10 10 C 1.40121 * 120.95759 * 89.72575 * 9 7 6 11 11 F 1.35106 * 120.52235 * 359.97438 * 10 9 7 12 12 C 1.38425 * 118.95860 * 179.75180 * 10 9 7 13 13 N 1.31769 * 120.93102 * 0.52514 * 12 10 9 14 14 C 1.31770 * 122.14023 * 359.72464 * 13 12 10 15 15 C 1.38427 * 120.92662 * 0.02562 * 14 13 12 16 16 F 1.35109 * 120.51841 * 179.97438 * 15 14 13 17 17 C 1.46926 * 118.73494 * 53.61115 * 6 5 3 18 18 C 1.53186 * 108.77645 * 306.38787 * 17 6 5 19 19 C 1.53038 * 109.31561 * 54.64154 * 18 17 6 20 20 H 1.09006 * 109.45055 * 58.63882 * 19 18 17 21 21 N 1.46496 * 109.46568 * 178.61475 * 19 18 17 22 22 C 1.36945 * 119.99718 * 275.06601 * 21 19 18 23 23 H 1.07997 * 119.99756 * 359.97438 * 22 21 19 24 24 C 1.38805 * 119.99878 * 179.97438 * 22 21 19 25 25 N 1.31624 * 120.00257 * 0.02562 * 24 22 21 26 26 Si 1.86803 * 119.99929 * 179.97438 * 24 22 21 27 27 H 1.48496 * 109.47187 * 179.97438 * 26 24 22 28 28 H 1.48494 * 109.47141 * 300.00154 * 26 24 22 29 29 H 1.48498 * 109.47018 * 60.00200 * 26 24 22 30 30 H 1.08992 * 109.47572 * 300.00122 * 1 2 3 31 31 H 1.09005 * 109.46559 * 60.00535 * 1 2 3 32 32 H 1.09002 * 109.46905 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.47264 * 239.99561 * 2 1 3 34 34 H 1.08996 * 109.47086 * 119.99692 * 2 1 3 35 35 H 1.09001 * 109.59097 * 305.20179 * 5 3 2 36 36 H 1.09002 * 109.58383 * 65.63096 * 5 3 2 37 37 H 1.07995 * 119.53779 * 180.25339 * 12 10 9 38 38 H 1.07993 * 119.53936 * 179.97438 * 14 13 12 39 39 H 1.08997 * 109.58642 * 66.18067 * 17 6 5 40 40 H 1.09004 * 109.58203 * 186.46371 * 17 6 5 41 41 H 1.08993 * 109.50239 * 294.68482 * 18 17 6 42 42 H 1.09002 * 109.49882 * 174.58706 * 18 17 6 43 43 H 0.96996 * 120.00499 * 95.06331 * 21 19 18 44 44 H 0.97001 * 119.99885 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6047 1.9823 0.8410 5 6 1.6385 2.1267 -1.3106 6 7 2.2451 3.4644 -1.3508 7 6 1.4856 4.5565 -1.5675 8 8 0.2869 4.4402 -1.7315 9 6 2.1106 5.8959 -1.6046 10 6 2.5942 6.4326 -2.8052 11 9 2.4988 5.7331 -3.9572 12 6 3.1670 7.6927 -2.7934 13 7 3.2695 8.3796 -1.6736 14 6 2.8330 7.9117 -0.5217 15 6 2.2415 6.6628 -0.4393 16 9 1.7973 6.1909 0.7462 17 6 3.6952 3.5887 -1.1499 18 6 4.0735 2.8882 0.1588 19 6 3.5652 1.4451 0.1258 20 1 4.0009 0.9263 -0.7282 21 7 3.9541 0.7622 1.3621 22 6 5.1923 0.1864 1.4660 23 1 5.8819 0.2355 0.6363 24 6 5.5609 -0.4602 2.6376 25 7 4.7202 -0.5204 3.6486 26 14 7.2496 -1.2462 2.7790 27 1 7.3960 -1.8669 4.1200 28 1 7.4000 -2.2880 1.7316 29 1 8.2956 -0.2077 2.5980 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 1.9965 1.5376 -2.1550 36 1 0.5532 2.2160 -1.3587 37 1 3.5391 8.1171 -3.7141 38 1 2.9389 8.5105 0.3707 39 1 4.2209 3.1189 -1.9812 40 1 3.9673 4.6428 -1.0945 41 1 3.6192 3.4148 0.9979 42 1 5.1577 2.8895 0.2719 43 1 3.3346 0.7178 2.1072 44 1 4.9778 -0.9727 4.4672 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001037856398.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:18:53 Heat of formation + Delta-G solvation = -94.704060 kcal Electronic energy + Delta-G solvation = -30514.491359 eV Core-core repulsion = 26102.387381 eV Total energy + Delta-G solvation = -4412.103977 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -50.37622 -50.34513 -41.86669 -40.78381 -39.26791 -36.36140 -35.43756 -33.84109 -33.49913 -31.96630 -31.19169 -30.16993 -27.38576 -25.95348 -25.15631 -24.79947 -24.36389 -22.34232 -21.63865 -20.81613 -19.46091 -19.39427 -19.12268 -18.84915 -17.97800 -17.23654 -17.18768 -16.88968 -16.69044 -16.66169 -16.19177 -15.75038 -15.60563 -15.48169 -15.01289 -14.86632 -14.82127 -14.64697 -14.54996 -14.38040 -14.09760 -13.67323 -13.34520 -13.28348 -13.15808 -12.81510 -12.73416 -12.59399 -12.24959 -12.15665 -11.91044 -11.80500 -11.60114 -11.54124 -11.19840 -11.12675 -10.98949 -10.80334 -10.18491 -9.94104 -8.97954 -7.90754 -5.18885 -0.70698 -0.53082 1.00325 1.49293 1.50954 1.56901 1.59134 2.13296 2.32250 2.57949 2.73154 2.82965 3.15863 3.41163 3.42212 3.64099 3.68925 3.72666 3.86311 3.93668 4.10070 4.17786 4.22189 4.24957 4.33419 4.39513 4.57330 4.58428 4.63155 4.70628 4.72705 4.78850 4.94339 4.96062 5.09543 5.19275 5.21305 5.28906 5.38420 5.48096 5.55544 5.57790 6.00941 6.29915 6.36849 6.64553 7.36993 8.11735 8.35459 9.32458 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.013181 B = 0.003473 C = 0.003105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2123.732940 B = 8060.548147 C = 9016.663367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.106 4.106 3 C -0.093 4.093 4 H 0.051 0.949 5 C 0.124 3.876 6 N -0.589 5.589 7 C 0.561 3.439 8 O -0.559 6.559 9 C -0.163 4.163 10 C 0.103 3.897 11 F -0.115 7.115 12 C 0.090 3.910 13 N -0.423 5.423 14 C 0.087 3.913 15 C 0.095 3.905 16 F -0.123 7.123 17 C 0.114 3.886 18 C -0.140 4.140 19 C 0.180 3.820 20 H 0.053 0.947 21 N -0.729 5.729 22 C -0.233 4.233 23 H 0.078 0.922 24 C -0.073 4.073 25 N -0.970 5.970 26 Si 0.967 3.033 27 H -0.301 1.301 28 H -0.279 1.279 29 H -0.278 1.278 30 H 0.044 0.956 31 H 0.063 0.937 32 H 0.062 0.938 33 H 0.068 0.932 34 H 0.049 0.951 35 H 0.093 0.907 36 H 0.090 0.910 37 H 0.220 0.780 38 H 0.212 0.788 39 H 0.096 0.904 40 H 0.086 0.914 41 H 0.043 0.957 42 H 0.072 0.928 43 H 0.371 0.629 44 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.675 16.505 -14.927 22.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.144 4.144 3 C -0.113 4.113 4 H 0.069 0.931 5 C 0.002 3.998 6 N -0.319 5.319 7 C 0.347 3.653 8 O -0.438 6.438 9 C -0.175 4.175 10 C 0.081 3.919 11 F -0.094 7.094 12 C -0.068 4.068 13 N -0.130 5.130 14 C -0.071 4.071 15 C 0.072 3.928 16 F -0.101 7.101 17 C -0.008 4.008 18 C -0.181 4.181 19 C 0.071 3.929 20 H 0.071 0.929 21 N -0.368 5.368 22 C -0.365 4.365 23 H 0.096 0.904 24 C -0.265 4.265 25 N -0.621 5.621 26 Si 0.797 3.203 27 H -0.228 1.228 28 H -0.205 1.205 29 H -0.204 1.204 30 H 0.063 0.937 31 H 0.082 0.918 32 H 0.081 0.919 33 H 0.087 0.913 34 H 0.068 0.932 35 H 0.111 0.889 36 H 0.108 0.892 37 H 0.236 0.764 38 H 0.229 0.771 39 H 0.115 0.885 40 H 0.104 0.896 41 H 0.062 0.938 42 H 0.091 0.909 43 H 0.202 0.798 44 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -3.751 17.113 -15.079 23.115 hybrid contribution 0.023 -1.888 1.155 2.214 sum -3.729 15.225 -13.923 20.966 Atomic orbital electron populations 1.21790 0.94932 1.02029 1.01653 1.21351 0.96006 0.94791 1.02257 1.21640 0.96042 0.96737 0.96899 0.93057 1.21829 0.99533 0.80732 0.97738 1.48205 1.09226 1.06493 1.68006 1.18076 0.86082 0.84182 0.76932 1.90793 1.15275 1.86396 1.51325 1.20578 1.04887 0.97334 0.94733 1.18740 0.99995 0.92759 0.80406 1.91597 1.93689 1.78413 1.45670 1.23585 0.95774 0.88009 0.99457 1.67820 1.14068 1.33264 0.97878 1.23475 0.94022 0.90817 0.98772 1.18883 0.99200 0.94754 0.79949 1.91606 1.86714 1.88493 1.43321 1.21920 0.78331 1.01834 0.98724 1.22475 1.01679 0.97998 0.95986 1.20396 0.92200 0.90958 0.89321 0.92880 1.42553 1.15524 1.64922 1.13821 1.19554 0.92543 1.25979 0.98388 0.90362 1.25463 1.01467 1.03084 0.96505 1.69816 1.37094 1.50011 1.05176 0.85309 0.80430 0.78453 0.76153 1.22781 1.20488 1.20446 0.93714 0.91772 0.91918 0.91317 0.93226 0.88907 0.89169 0.76363 0.77098 0.88548 0.89569 0.93763 0.90912 0.79754 0.94278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.94 9.67 71.98 0.70 -3.25 16 2 C -0.11 -3.36 5.31 30.60 0.16 -3.20 16 3 C -0.09 -3.01 1.92 -10.71 -0.02 -3.03 16 4 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 5 C 0.12 3.43 5.33 86.36 0.46 3.89 16 6 N -0.59 -16.28 2.97 -822.29 -2.44 -18.72 16 7 C 0.56 16.67 6.62 86.79 0.57 17.24 16 8 O -0.56 -20.26 16.52 -3.87 -0.06 -20.32 16 9 C -0.16 -3.81 3.67 -19.82 -0.07 -3.88 16 10 C 0.10 1.88 7.34 22.77 0.17 2.05 16 11 F -0.12 -2.27 16.92 44.97 0.76 -1.51 16 12 C 0.09 1.12 11.16 84.75 0.95 2.07 16 13 N -0.42 -6.04 10.33 -195.64 -2.02 -8.06 16 14 C 0.09 1.28 11.16 84.75 0.95 2.23 16 15 C 0.09 2.00 7.20 22.77 0.16 2.16 16 16 F -0.12 -3.17 16.92 44.97 0.76 -2.41 16 17 C 0.11 2.81 6.34 86.36 0.55 3.36 16 18 C -0.14 -4.52 5.66 30.67 0.17 -4.34 16 19 C 0.18 6.55 2.19 45.02 0.10 6.65 16 20 H 0.05 1.91 8.08 -2.38 -0.02 1.89 16 21 N -0.73 -34.71 4.33 -322.81 -1.40 -36.11 16 22 C -0.23 -12.21 9.93 84.03 0.83 -11.38 16 23 H 0.08 3.89 7.83 -2.91 -0.02 3.87 16 24 C -0.07 -4.05 5.50 84.86 0.47 -3.59 16 25 N -0.97 -58.29 13.06 21.65 0.28 -58.01 16 26 Si 0.97 44.88 29.55 68.60 2.03 46.91 16 27 H -0.30 -14.35 7.11 99.48 0.71 -13.65 16 28 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 29 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 30 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 31 H 0.06 1.54 6.70 -2.38 -0.02 1.52 16 32 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 33 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 34 H 0.05 1.95 7.22 -2.39 -0.02 1.93 16 35 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 36 H 0.09 2.63 5.72 -2.39 -0.01 2.61 16 37 H 0.22 1.03 8.06 -2.91 -0.02 1.00 16 38 H 0.21 1.78 8.06 -2.91 -0.02 1.75 16 39 H 0.10 2.02 8.14 -2.39 -0.02 2.00 16 40 H 0.09 1.85 6.23 -2.39 -0.01 1.84 16 41 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 42 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 43 H 0.37 19.59 7.51 -92.71 -0.70 18.89 16 44 H 0.25 14.66 8.31 -92.71 -0.77 13.89 16 Total: -1.00 -68.76 369.77 4.40 -64.36 By element: Atomic # 1 Polarization: 26.54 SS G_CDS: 0.35 Total: 26.89 kcal Atomic # 6 Polarization: 0.83 SS G_CDS: 6.14 Total: 6.98 kcal Atomic # 7 Polarization: -115.32 SS G_CDS: -5.58 Total: -120.90 kcal Atomic # 8 Polarization: -20.26 SS G_CDS: -0.06 Total: -20.32 kcal Atomic # 9 Polarization: -5.44 SS G_CDS: 1.52 Total: -3.92 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.91 kcal Total: -68.76 4.40 -64.36 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037856398.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.345 kcal (2) G-P(sol) polarization free energy of solvation -68.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.359 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds