Wall clock time and date at job start Tue Mar 31 2020 22:18:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.47004 * 2 1 4 4 H 1.09003 * 109.49743 * 304.99444 * 3 2 1 5 5 C 1.53187 * 109.50098 * 65.05962 * 3 2 1 6 6 N 1.46925 * 108.77696 * 174.58611 * 5 3 2 7 7 C 1.34780 * 120.63067 * 126.36905 * 6 5 3 8 8 O 1.21545 * 120.00246 * 352.13701 * 7 6 5 9 9 C 1.47887 * 119.99933 * 172.13189 * 7 6 5 10 10 N 1.32846 * 119.71966 * 352.14075 * 9 7 6 11 11 C 1.31368 * 121.68501 * 179.74438 * 10 9 7 12 12 C 1.39002 * 120.93339 * 0.53870 * 11 10 9 13 13 F 1.35094 * 120.33137 * 179.71287 * 12 11 10 14 14 C 1.38720 * 119.34016 * 359.73365 * 12 11 10 15 15 C 1.38832 * 118.45298 * 0.02562 * 14 12 11 16 16 F 1.35104 * 120.48824 * 179.97438 * 15 14 12 17 17 C 1.46926 * 118.73865 * 306.39476 * 6 5 3 18 18 C 1.53191 * 108.77810 * 53.60521 * 17 6 5 19 19 C 1.53034 * 109.33945 * 305.38088 * 18 17 6 20 20 H 1.08994 * 109.43640 * 301.31498 * 19 18 17 21 21 N 1.46494 * 109.48692 * 181.34859 * 19 18 17 22 22 C 1.36939 * 119.99587 * 84.91648 * 21 19 18 23 23 H 1.07991 * 120.00485 * 0.02562 * 22 21 19 24 24 C 1.38816 * 119.99940 * 180.02562 * 22 21 19 25 25 N 1.31626 * 119.99920 * 359.97438 * 24 22 21 26 26 Si 1.86802 * 120.00136 * 180.02562 * 24 22 21 27 27 H 1.48490 * 109.47196 * 89.99743 * 26 24 22 28 28 H 1.48495 * 109.47048 * 210.00213 * 26 24 22 29 29 H 1.48507 * 109.46695 * 329.99633 * 26 24 22 30 30 H 1.09000 * 109.46636 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47107 * 300.00648 * 1 2 3 32 32 H 1.08997 * 109.46671 * 60.00600 * 1 2 3 33 33 H 1.08998 * 109.47587 * 239.99571 * 2 1 3 34 34 H 1.09007 * 109.46654 * 119.99518 * 2 1 3 35 35 H 1.08998 * 109.58885 * 294.37596 * 5 3 2 36 36 H 1.09006 * 109.58545 * 54.65787 * 5 3 2 37 37 H 1.08000 * 119.53384 * 180.26884 * 11 10 9 38 38 H 1.08007 * 120.77199 * 179.97438 * 14 12 11 39 39 H 1.09007 * 109.58781 * 173.39811 * 17 6 5 40 40 H 1.09005 * 109.58420 * 293.67521 * 17 6 5 41 41 H 1.08997 * 109.49297 * 65.31691 * 18 17 6 42 42 H 1.08999 * 109.49648 * 185.37813 * 18 17 6 43 43 H 0.97005 * 120.00496 * 264.91746 * 21 19 18 44 44 H 0.96998 * 119.99522 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6057 1.9819 -0.8418 5 6 1.6364 2.1276 1.3093 6 7 2.2429 3.4652 1.3497 7 6 1.4830 4.5575 1.5643 8 8 0.2716 4.4609 1.5842 9 6 2.1233 5.8738 1.7757 10 7 3.4428 5.9504 1.9094 11 6 4.0521 7.0996 2.0937 12 6 3.3321 8.2863 2.1673 13 9 3.9707 9.4606 2.3629 14 6 1.9513 8.2528 2.0383 15 6 1.3352 7.0246 1.8394 16 9 -0.0071 6.9443 1.7090 17 6 3.6933 3.5895 1.1512 18 6 4.0740 2.8880 -0.1564 19 6 3.5655 1.4450 -0.1240 20 1 4.0000 0.9264 0.7305 21 7 3.9557 0.7615 -1.3596 22 6 5.1940 0.1857 -1.4617 23 1 5.8826 0.2352 -0.6314 24 6 5.5640 -0.4615 -2.6327 25 7 4.7245 -0.5222 -3.6446 26 14 7.2529 -1.2475 -2.7718 27 1 7.1827 -2.6566 -2.3084 28 1 7.6996 -1.2136 -4.1875 29 1 8.2189 -0.4970 -1.9298 30 1 -0.3632 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3632 0.5137 -0.8900 33 1 1.8935 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8901 35 1 0.5511 2.2169 1.3556 36 1 1.9908 1.5377 2.1547 37 1 5.1272 7.1221 2.1937 38 1 1.3691 9.1608 2.0922 39 1 3.9652 4.6435 1.0930 40 1 4.2176 3.1224 1.9849 41 1 3.6209 3.4142 -0.9967 42 1 5.1582 2.8898 -0.2680 43 1 3.3370 0.7168 -2.1054 44 1 4.9830 -0.9748 -4.4627 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037883414.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:18:28 Heat of formation + Delta-G solvation = -58.370897 kcal Electronic energy + Delta-G solvation = -29972.559191 eV Core-core repulsion = 25562.030738 eV Total energy + Delta-G solvation = -4410.528453 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -49.67521 -49.39525 -41.07795 -39.48514 -37.75023 -34.83811 -33.79826 -32.96955 -31.73053 -31.42943 -29.44853 -28.64325 -25.88052 -24.78040 -24.14274 -23.64224 -22.66511 -20.86220 -20.54147 -19.42871 -18.77303 -18.60676 -17.37830 -17.04733 -16.81719 -16.39135 -16.21027 -15.89827 -15.40093 -15.13134 -14.91938 -14.87932 -14.31429 -14.09704 -13.78301 -13.66090 -13.48688 -13.29963 -13.17741 -12.96893 -12.91161 -12.60985 -12.08442 -11.88553 -11.60161 -11.26178 -10.93062 -10.88000 -10.68276 -10.50345 -10.36671 -10.32613 -10.19228 -10.13115 -9.78092 -9.57184 -9.48136 -9.39290 -8.81228 -8.45107 -6.93259 -5.76247 -3.04509 -0.15978 0.26070 2.28094 2.75433 3.14771 3.19678 3.42871 3.45530 3.48179 3.49820 3.60003 3.97791 4.07261 4.41069 4.58775 4.82177 4.98744 5.13252 5.16835 5.25344 5.36376 5.50342 5.59819 5.62078 5.65570 5.71563 5.78363 5.88856 5.96147 6.13988 6.16803 6.28634 6.39570 6.42557 6.46626 6.49568 6.61510 6.73331 6.87994 6.88846 6.98982 7.11014 7.44698 7.70145 8.04089 8.42138 9.53485 10.11585 10.46506 11.46300 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.013247 B = 0.003156 C = 0.002655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2113.172167 B = 8869.696907 C =10542.169617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.112 4.112 3 C -0.104 4.104 4 H 0.070 0.930 5 C 0.117 3.883 6 N -0.579 5.579 7 C 0.565 3.435 8 O -0.529 6.529 9 C 0.043 3.957 10 N -0.387 5.387 11 C 0.060 3.940 12 C 0.103 3.897 13 F -0.116 7.116 14 C -0.157 4.157 15 C 0.143 3.857 16 F -0.095 7.095 17 C 0.072 3.928 18 C -0.151 4.151 19 C 0.182 3.818 20 H 0.047 0.953 21 N -0.721 5.721 22 C -0.236 4.236 23 H 0.070 0.930 24 C -0.013 4.013 25 N -0.932 5.932 26 Si 0.904 3.096 27 H -0.291 1.291 28 H -0.293 1.293 29 H -0.282 1.282 30 H 0.049 0.951 31 H 0.049 0.951 32 H 0.051 0.949 33 H 0.084 0.916 34 H 0.057 0.943 35 H 0.091 0.909 36 H 0.069 0.931 37 H 0.186 0.814 38 H 0.168 0.832 39 H 0.137 0.863 40 H 0.064 0.936 41 H 0.055 0.945 42 H 0.075 0.925 43 H 0.384 0.616 44 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.947 17.100 13.970 22.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.150 4.150 3 C -0.124 4.124 4 H 0.088 0.912 5 C -0.005 4.005 6 N -0.309 5.309 7 C 0.350 3.650 8 O -0.406 6.406 9 C -0.096 4.096 10 N -0.097 5.097 11 C -0.101 4.101 12 C 0.081 3.919 13 F -0.094 7.094 14 C -0.184 4.184 15 C 0.120 3.880 16 F -0.073 7.073 17 C -0.051 4.051 18 C -0.192 4.192 19 C 0.072 3.928 20 H 0.065 0.935 21 N -0.361 5.361 22 C -0.367 4.367 23 H 0.088 0.912 24 C -0.209 4.209 25 N -0.581 5.581 26 Si 0.736 3.264 27 H -0.218 1.218 28 H -0.219 1.219 29 H -0.208 1.208 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.070 0.930 33 H 0.102 0.898 34 H 0.076 0.924 35 H 0.109 0.891 36 H 0.088 0.912 37 H 0.203 0.797 38 H 0.186 0.814 39 H 0.153 0.847 40 H 0.083 0.917 41 H 0.074 0.926 42 H 0.094 0.906 43 H 0.217 0.783 44 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -4.989 16.188 13.948 21.942 hybrid contribution 0.352 0.571 -0.447 0.806 sum -4.637 16.758 13.501 22.014 Atomic orbital electron populations 1.21847 0.96811 1.01020 1.01327 1.21454 0.94361 0.95660 1.03492 1.21777 0.97818 0.96233 0.96546 0.91178 1.21864 0.99444 0.81033 0.98200 1.48000 1.09468 1.05904 1.67512 1.17508 0.86210 0.82736 0.78531 1.90844 1.12724 1.84871 1.52138 1.21670 0.89720 0.94520 1.03645 1.68016 1.08019 1.25383 1.08294 1.23364 1.02302 0.85916 0.98528 1.18745 0.90211 0.83014 0.99936 1.91593 1.81374 1.44701 1.91736 1.21693 0.94134 0.99001 1.03531 1.18259 0.79168 0.92699 0.97860 1.91674 1.27163 1.96672 1.91748 1.23093 0.77907 1.05899 0.98172 1.22683 1.02044 0.98919 0.95570 1.20224 0.90641 0.90844 0.91123 0.93468 1.42416 1.16434 1.64524 1.12741 1.19219 0.91797 1.27183 0.98537 0.91244 1.24720 0.98105 1.01629 0.96449 1.69663 1.35249 1.48430 1.04746 0.86233 0.84113 0.79336 0.76761 1.21810 1.21896 1.20816 0.93177 0.93229 0.92965 0.89753 0.92447 0.89071 0.91248 0.79719 0.81428 0.84713 0.91731 0.92624 0.90631 0.78254 0.93572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.14 9.67 37.16 0.36 -1.78 16 2 C -0.11 -1.82 5.31 -26.73 -0.14 -1.96 16 3 C -0.10 -1.72 1.92 -90.50 -0.17 -1.90 16 4 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 5 C 0.12 1.72 5.34 -3.71 -0.02 1.70 16 6 N -0.58 -8.51 2.97 -173.86 -0.52 -9.03 16 7 C 0.56 8.53 7.65 -12.31 -0.09 8.44 16 8 O -0.53 -9.30 14.78 5.33 0.08 -9.22 16 9 C 0.04 0.52 6.61 -82.96 -0.55 -0.02 16 10 N -0.39 -3.98 6.07 -9.70 -0.06 -4.04 16 11 C 0.06 0.44 11.17 -17.47 -0.20 0.25 16 12 C 0.10 0.73 7.35 -39.12 -0.29 0.44 16 13 F -0.12 -0.80 17.28 2.25 0.04 -0.76 16 14 C -0.16 -1.17 10.14 -39.18 -0.40 -1.57 16 15 C 0.14 1.53 7.30 -38.84 -0.28 1.25 16 16 F -0.09 -1.19 15.58 2.25 0.04 -1.15 16 17 C 0.07 0.99 5.90 -3.71 -0.02 0.97 16 18 C -0.15 -2.58 5.66 -26.61 -0.15 -2.73 16 19 C 0.18 3.45 2.19 -67.89 -0.15 3.30 16 20 H 0.05 0.92 8.08 -51.93 -0.42 0.50 16 21 N -0.72 -17.25 4.33 -53.39 -0.23 -17.48 16 22 C -0.24 -6.30 9.93 -15.06 -0.15 -6.45 16 23 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 24 C -0.01 -0.37 5.50 -17.43 -0.10 -0.46 16 25 N -0.93 -27.64 13.06 55.49 0.72 -26.91 16 26 Si 0.90 21.97 29.55 -169.99 -5.02 16.95 16 27 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 28 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 29 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 30 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.05 0.64 6.70 -51.93 -0.35 0.29 16 32 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.08 1.64 7.22 -51.93 -0.37 1.27 16 34 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 35 H 0.09 1.38 5.72 -51.93 -0.30 1.08 16 36 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.19 0.81 8.06 -52.49 -0.42 0.38 16 38 H 0.17 0.82 8.06 -52.48 -0.42 0.40 16 39 H 0.14 1.70 3.96 -87.57 -0.35 1.36 16 40 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 41 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 42 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 43 H 0.38 9.94 7.51 -40.82 -0.31 9.64 16 44 H 0.25 7.35 8.31 -40.82 -0.34 7.02 16 LS Contribution 363.17 15.07 5.47 5.47 Total: -1.00 -31.08 363.17 -7.70 -38.77 By element: Atomic # 1 Polarization: 13.78 SS G_CDS: -5.87 Total: 7.92 kcal Atomic # 6 Polarization: 1.83 SS G_CDS: -2.35 Total: -0.52 kcal Atomic # 7 Polarization: -57.38 SS G_CDS: -0.08 Total: -57.46 kcal Atomic # 8 Polarization: -9.30 SS G_CDS: 0.08 Total: -9.22 kcal Atomic # 9 Polarization: -1.99 SS G_CDS: 0.07 Total: -1.91 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -31.08 -7.70 -38.77 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037883414.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.598 kcal (2) G-P(sol) polarization free energy of solvation -31.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds