Wall clock time and date at job start Tue Mar 31 2020 22:18:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.47004 * 2 1 4 4 H 1.09003 * 109.49743 * 304.99444 * 3 2 1 5 5 C 1.53187 * 109.50098 * 65.05962 * 3 2 1 6 6 N 1.46925 * 108.77696 * 174.58611 * 5 3 2 7 7 C 1.34780 * 120.63067 * 126.36905 * 6 5 3 8 8 O 1.21545 * 120.00246 * 352.13701 * 7 6 5 9 9 C 1.47887 * 119.99933 * 172.13189 * 7 6 5 10 10 N 1.32846 * 119.71966 * 352.14075 * 9 7 6 11 11 C 1.31368 * 121.68501 * 179.74438 * 10 9 7 12 12 C 1.39002 * 120.93339 * 0.53870 * 11 10 9 13 13 F 1.35094 * 120.33137 * 179.71287 * 12 11 10 14 14 C 1.38720 * 119.34016 * 359.73365 * 12 11 10 15 15 C 1.38832 * 118.45298 * 0.02562 * 14 12 11 16 16 F 1.35104 * 120.48824 * 179.97438 * 15 14 12 17 17 C 1.46926 * 118.73865 * 306.39476 * 6 5 3 18 18 C 1.53191 * 108.77810 * 53.60521 * 17 6 5 19 19 C 1.53034 * 109.33945 * 305.38088 * 18 17 6 20 20 H 1.08994 * 109.43640 * 301.31498 * 19 18 17 21 21 N 1.46494 * 109.48692 * 181.34859 * 19 18 17 22 22 C 1.36939 * 119.99587 * 84.91648 * 21 19 18 23 23 H 1.07991 * 120.00485 * 0.02562 * 22 21 19 24 24 C 1.38816 * 119.99940 * 180.02562 * 22 21 19 25 25 N 1.31626 * 119.99920 * 359.97438 * 24 22 21 26 26 Si 1.86802 * 120.00136 * 180.02562 * 24 22 21 27 27 H 1.48490 * 109.47196 * 89.99743 * 26 24 22 28 28 H 1.48495 * 109.47048 * 210.00213 * 26 24 22 29 29 H 1.48507 * 109.46695 * 329.99633 * 26 24 22 30 30 H 1.09000 * 109.46636 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47107 * 300.00648 * 1 2 3 32 32 H 1.08997 * 109.46671 * 60.00600 * 1 2 3 33 33 H 1.08998 * 109.47587 * 239.99571 * 2 1 3 34 34 H 1.09007 * 109.46654 * 119.99518 * 2 1 3 35 35 H 1.08998 * 109.58885 * 294.37596 * 5 3 2 36 36 H 1.09006 * 109.58545 * 54.65787 * 5 3 2 37 37 H 1.08000 * 119.53384 * 180.26884 * 11 10 9 38 38 H 1.08007 * 120.77199 * 179.97438 * 14 12 11 39 39 H 1.09007 * 109.58781 * 173.39811 * 17 6 5 40 40 H 1.09005 * 109.58420 * 293.67521 * 17 6 5 41 41 H 1.08997 * 109.49297 * 65.31691 * 18 17 6 42 42 H 1.08999 * 109.49648 * 185.37813 * 18 17 6 43 43 H 0.97005 * 120.00496 * 264.91746 * 21 19 18 44 44 H 0.96998 * 119.99522 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6057 1.9819 -0.8418 5 6 1.6364 2.1276 1.3093 6 7 2.2429 3.4652 1.3497 7 6 1.4830 4.5575 1.5643 8 8 0.2716 4.4609 1.5842 9 6 2.1233 5.8738 1.7757 10 7 3.4428 5.9504 1.9094 11 6 4.0521 7.0996 2.0937 12 6 3.3321 8.2863 2.1673 13 9 3.9707 9.4606 2.3629 14 6 1.9513 8.2528 2.0383 15 6 1.3352 7.0246 1.8394 16 9 -0.0071 6.9443 1.7090 17 6 3.6933 3.5895 1.1512 18 6 4.0740 2.8880 -0.1564 19 6 3.5655 1.4450 -0.1240 20 1 4.0000 0.9264 0.7305 21 7 3.9557 0.7615 -1.3596 22 6 5.1940 0.1857 -1.4617 23 1 5.8826 0.2352 -0.6314 24 6 5.5640 -0.4615 -2.6327 25 7 4.7245 -0.5222 -3.6446 26 14 7.2529 -1.2475 -2.7718 27 1 7.1827 -2.6566 -2.3084 28 1 7.6996 -1.2136 -4.1875 29 1 8.2189 -0.4970 -1.9298 30 1 -0.3632 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3632 0.5137 -0.8900 33 1 1.8935 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8901 35 1 0.5511 2.2169 1.3556 36 1 1.9908 1.5377 2.1547 37 1 5.1272 7.1221 2.1937 38 1 1.3691 9.1608 2.0922 39 1 3.9652 4.6435 1.0930 40 1 4.2176 3.1224 1.9849 41 1 3.6209 3.4142 -0.9967 42 1 5.1582 2.8898 -0.2680 43 1 3.3370 0.7168 -2.1054 44 1 4.9830 -0.9748 -4.4627 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001037883414.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:18:27 Heat of formation + Delta-G solvation = -76.672669 kcal Electronic energy + Delta-G solvation = -29973.352815 eV Core-core repulsion = 25562.030738 eV Total energy + Delta-G solvation = -4411.322078 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -50.26473 -50.23515 -42.00486 -40.52991 -39.08791 -36.26417 -35.36149 -33.73396 -33.43245 -32.26156 -31.05234 -29.96083 -27.12891 -25.83413 -25.41309 -24.67559 -24.13900 -22.24063 -21.68737 -20.79518 -19.53524 -19.36747 -19.03894 -18.31172 -17.59356 -17.34466 -17.11914 -16.76632 -16.61725 -16.32237 -16.14579 -15.65239 -15.60056 -15.53135 -15.07198 -14.94281 -14.67962 -14.48746 -14.41081 -14.27340 -13.93039 -13.71569 -13.54583 -13.05732 -12.98758 -12.83134 -12.65647 -12.52973 -12.14782 -12.07961 -11.83372 -11.60682 -11.53275 -11.47542 -11.11632 -11.08422 -10.95692 -10.26656 -10.23780 -9.66432 -8.91698 -7.88868 -5.16333 -0.92329 -0.38548 1.37732 1.49916 1.50934 1.59051 1.74113 2.30130 2.43210 2.59843 2.73239 2.79731 3.26193 3.37569 3.44916 3.70254 3.79418 3.81492 4.01368 4.17187 4.18263 4.30682 4.36863 4.39089 4.43196 4.52510 4.59942 4.64333 4.79412 4.81861 4.90986 5.00886 5.06704 5.07530 5.16090 5.26990 5.35969 5.40969 5.52772 5.54357 5.59501 5.70832 6.13306 6.31834 6.32871 6.90664 7.38779 8.14868 8.38649 9.34801 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.013247 B = 0.003156 C = 0.002655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2113.172167 B = 8869.696907 C =10542.169617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.106 4.106 3 C -0.092 4.092 4 H 0.049 0.951 5 C 0.123 3.877 6 N -0.583 5.583 7 C 0.560 3.440 8 O -0.562 6.562 9 C 0.020 3.980 10 N -0.401 5.401 11 C 0.074 3.926 12 C 0.119 3.881 13 F -0.108 7.108 14 C -0.140 4.140 15 C 0.129 3.871 16 F -0.112 7.112 17 C 0.082 3.918 18 C -0.141 4.141 19 C 0.178 3.822 20 H 0.048 0.952 21 N -0.731 5.731 22 C -0.229 4.229 23 H 0.078 0.922 24 C -0.077 4.077 25 N -0.972 5.972 26 Si 0.968 3.032 27 H -0.290 1.290 28 H -0.301 1.301 29 H -0.267 1.267 30 H 0.061 0.939 31 H 0.064 0.936 32 H 0.043 0.957 33 H 0.047 0.953 34 H 0.066 0.934 35 H 0.089 0.911 36 H 0.087 0.913 37 H 0.221 0.779 38 H 0.196 0.804 39 H 0.156 0.844 40 H 0.079 0.921 41 H 0.037 0.963 42 H 0.067 0.933 43 H 0.369 0.631 44 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.612 19.116 16.213 25.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.144 4.144 3 C -0.113 4.113 4 H 0.067 0.933 5 C 0.000 4.000 6 N -0.313 5.313 7 C 0.348 3.652 8 O -0.441 6.441 9 C -0.116 4.116 10 N -0.112 5.112 11 C -0.088 4.088 12 C 0.097 3.903 13 F -0.086 7.086 14 C -0.167 4.167 15 C 0.106 3.894 16 F -0.090 7.090 17 C -0.040 4.040 18 C -0.182 4.182 19 C 0.069 3.931 20 H 0.066 0.934 21 N -0.370 5.370 22 C -0.361 4.361 23 H 0.096 0.904 24 C -0.269 4.269 25 N -0.623 5.623 26 Si 0.798 3.202 27 H -0.218 1.218 28 H -0.228 1.228 29 H -0.192 1.192 30 H 0.080 0.920 31 H 0.083 0.917 32 H 0.063 0.937 33 H 0.065 0.935 34 H 0.085 0.915 35 H 0.107 0.893 36 H 0.105 0.895 37 H 0.237 0.763 38 H 0.213 0.787 39 H 0.171 0.829 40 H 0.097 0.903 41 H 0.055 0.945 42 H 0.086 0.914 43 H 0.201 0.799 44 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -3.649 18.228 16.247 24.689 hybrid contribution -0.036 0.095 -1.062 1.067 sum -3.684 18.323 15.185 24.081 Atomic orbital electron populations 1.21781 0.94872 1.01941 1.01698 1.21354 0.96055 0.95004 1.02027 1.21622 0.95977 0.96547 0.97105 0.93265 1.21769 0.99472 0.81453 0.97293 1.48061 1.09750 1.05867 1.67596 1.17956 0.85940 0.83754 0.77575 1.90812 1.14154 1.85608 1.53563 1.21229 0.90730 0.93389 1.06292 1.67762 1.07097 1.26966 1.09341 1.23890 1.03668 0.84960 0.96261 1.18683 0.89931 0.83124 0.98548 1.91629 1.81178 1.44327 1.91444 1.21906 0.94543 0.98659 1.01561 1.18405 0.78502 0.93479 0.98999 1.91629 1.28428 1.96815 1.92120 1.23127 0.77526 1.06876 0.96451 1.22494 1.01156 0.97483 0.97037 1.20451 0.92247 0.91441 0.88944 0.93378 1.42594 1.15502 1.65027 1.13884 1.19607 0.92553 1.25607 0.98318 0.90408 1.25486 1.01613 1.03262 0.96519 1.69831 1.37133 1.50171 1.05186 0.85212 0.80417 0.78372 0.76230 1.21788 1.22784 1.19169 0.91998 0.91674 0.93734 0.93451 0.91515 0.89273 0.89465 0.76303 0.78683 0.82866 0.90251 0.94458 0.91443 0.79892 0.94345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.05 9.67 71.98 0.70 -3.36 16 2 C -0.11 -3.52 5.31 30.60 0.16 -3.36 16 3 C -0.09 -3.13 1.92 -10.71 -0.02 -3.15 16 4 H 0.05 1.86 8.14 -2.39 -0.02 1.85 16 5 C 0.12 3.55 5.34 86.36 0.46 4.01 16 6 N -0.58 -16.75 2.97 -822.26 -2.44 -19.19 16 7 C 0.56 16.77 7.65 86.80 0.66 17.43 16 8 O -0.56 -20.01 14.78 -3.86 -0.06 -20.07 16 9 C 0.02 0.46 6.61 41.88 0.28 0.74 16 10 N -0.40 -7.25 6.07 -184.60 -1.12 -8.38 16 11 C 0.07 0.81 11.17 84.95 0.95 1.76 16 12 C 0.12 1.23 7.35 22.57 0.17 1.39 16 13 F -0.11 -1.03 17.28 44.97 0.78 -0.25 16 14 C -0.14 -1.67 10.14 22.53 0.23 -1.44 16 15 C 0.13 2.59 7.30 22.75 0.17 2.75 16 16 F -0.11 -2.79 15.58 44.97 0.70 -2.09 16 17 C 0.08 2.16 5.90 86.36 0.51 2.67 16 18 C -0.14 -4.79 5.66 30.67 0.17 -4.61 16 19 C 0.18 6.79 2.19 45.02 0.10 6.89 16 20 H 0.05 1.84 8.08 -2.39 -0.02 1.82 16 21 N -0.73 -35.95 4.33 -322.83 -1.40 -37.35 16 22 C -0.23 -12.31 9.93 84.03 0.83 -11.48 16 23 H 0.08 3.98 7.83 -2.92 -0.02 3.96 16 24 C -0.08 -4.35 5.50 84.86 0.47 -3.89 16 25 N -0.97 -59.40 13.06 21.65 0.28 -59.12 16 26 Si 0.97 45.61 29.55 68.60 2.03 47.64 16 27 H -0.29 -13.55 7.11 99.48 0.71 -12.85 16 28 H -0.30 -14.47 7.11 99.48 0.71 -13.76 16 29 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 30 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 31 H 0.06 1.61 6.70 -2.39 -0.02 1.60 16 32 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.05 1.92 7.22 -2.39 -0.02 1.91 16 34 H 0.07 2.06 8.14 -2.38 -0.02 2.04 16 35 H 0.09 2.67 5.72 -2.39 -0.01 2.65 16 36 H 0.09 2.23 8.14 -2.38 -0.02 2.21 16 37 H 0.22 0.81 8.06 -2.91 -0.02 0.79 16 38 H 0.20 1.18 8.06 -2.91 -0.02 1.16 16 39 H 0.16 3.57 3.96 -72.76 -0.29 3.28 16 40 H 0.08 1.89 8.14 -2.38 -0.02 1.87 16 41 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 42 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 43 H 0.37 20.08 7.51 -92.70 -0.70 19.38 16 44 H 0.25 14.81 8.31 -92.71 -0.77 14.04 16 Total: -1.00 -69.66 363.17 4.67 -64.99 By element: Atomic # 1 Polarization: 27.38 SS G_CDS: 0.07 Total: 27.45 kcal Atomic # 6 Polarization: 0.53 SS G_CDS: 5.83 Total: 6.36 kcal Atomic # 7 Polarization: -119.35 SS G_CDS: -4.68 Total: -124.03 kcal Atomic # 8 Polarization: -20.01 SS G_CDS: -0.06 Total: -20.07 kcal Atomic # 9 Polarization: -3.81 SS G_CDS: 1.48 Total: -2.33 kcal Atomic # 14 Polarization: 45.61 SS G_CDS: 2.03 Total: 47.64 kcal Total: -69.66 4.67 -64.99 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037883414.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.687 kcal (2) G-P(sol) polarization free energy of solvation -69.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds