Wall clock time and date at job start Tue Mar 31 2020 22:18:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52995 * 109.47428 * 2 1 4 4 H 1.09005 * 109.52312 * 304.91916 * 3 2 1 5 5 C 1.53192 * 109.49753 * 64.99884 * 3 2 1 6 6 N 1.46934 * 108.89272 * 174.65998 * 5 3 2 7 7 C 1.34774 * 120.62762 * 126.30014 * 6 5 3 8 8 O 1.21552 * 120.00182 * 352.08568 * 7 6 5 9 9 C 1.47878 * 119.99778 * 172.08383 * 7 6 5 10 10 N 1.32847 * 119.71935 * 352.67705 * 9 7 6 11 11 C 1.31370 * 121.68362 * 179.97438 * 10 9 7 12 12 C 1.38996 * 120.93499 * 359.97438 * 11 10 9 13 13 F 1.35101 * 120.32767 * 180.02562 * 12 11 10 14 14 C 1.38719 * 119.34647 * 0.02562 * 12 11 10 15 15 C 1.38836 * 118.44425 * 359.72887 * 14 12 11 16 16 F 1.35099 * 120.48361 * 180.29009 * 15 14 12 17 17 C 1.46921 * 118.73778 * 306.31754 * 6 5 3 18 18 C 1.53199 * 108.77458 * 53.61543 * 17 6 5 19 19 C 1.53041 * 109.30857 * 305.35990 * 18 17 6 20 20 H 1.09003 * 109.46420 * 181.37231 * 19 18 17 21 21 N 1.46496 * 109.46457 * 301.34434 * 19 18 17 22 22 C 1.36933 * 120.00290 * 275.00718 * 21 19 18 23 23 H 1.08003 * 120.00331 * 359.97438 * 22 21 19 24 24 C 1.38809 * 120.00325 * 179.97438 * 22 21 19 25 25 N 1.31620 * 120.00092 * 359.97438 * 24 22 21 26 26 Si 1.86808 * 120.00194 * 179.97438 * 24 22 21 27 27 H 1.48501 * 109.46946 * 359.97438 * 26 24 22 28 28 H 1.48500 * 109.46919 * 119.99691 * 26 24 22 29 29 H 1.48501 * 109.47027 * 239.99618 * 26 24 22 30 30 H 1.08994 * 109.47012 * 299.99833 * 1 2 3 31 31 H 1.08998 * 109.47232 * 59.99823 * 1 2 3 32 32 H 1.09001 * 109.47209 * 179.97438 * 1 2 3 33 33 H 1.09006 * 109.47347 * 239.99956 * 2 1 3 34 34 H 1.08998 * 109.47232 * 120.00177 * 2 1 3 35 35 H 1.08994 * 109.58581 * 54.80103 * 5 3 2 36 36 H 1.08994 * 109.58695 * 294.52109 * 5 3 2 37 37 H 1.08000 * 119.52821 * 179.97438 * 11 10 9 38 38 H 1.08001 * 120.77802 * 180.02562 * 14 12 11 39 39 H 1.08995 * 109.58628 * 173.39585 * 17 6 5 40 40 H 1.08996 * 109.58865 * 293.82792 * 17 6 5 41 41 H 1.08997 * 109.50071 * 65.30814 * 18 17 6 42 42 H 1.09002 * 109.49590 * 185.38076 * 18 17 6 43 43 H 0.97004 * 120.00012 * 95.00097 * 21 19 18 44 44 H 0.97001 * 120.00394 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6070 1.9819 -0.8424 5 6 1.6351 2.1279 1.3088 6 7 2.2389 3.4668 1.3512 7 6 1.4765 4.5575 1.5646 8 8 0.2651 4.4585 1.5807 9 6 2.1137 5.8745 1.7792 10 7 3.4336 5.9547 1.9062 11 6 4.0399 7.1044 2.0974 12 6 3.3171 8.2892 2.1741 13 9 3.9532 9.4648 2.3706 14 6 1.9363 8.2527 2.0469 15 6 1.3235 7.0241 1.8404 16 9 -0.0182 6.9416 1.7050 17 6 3.6896 3.5939 1.1562 18 6 4.0746 2.8939 -0.1510 19 6 3.5688 1.4498 -0.1197 20 1 3.8626 0.9421 -1.0384 21 7 4.1510 0.7535 1.0302 22 6 5.3898 0.1791 0.9275 23 1 5.9375 0.2389 -0.0014 24 6 5.9417 -0.4803 2.0173 25 7 5.2745 -0.5529 3.1495 26 14 7.6313 -1.2646 1.8769 27 1 8.1671 -1.0444 0.5095 28 1 8.5463 -0.6506 2.8724 29 1 7.5233 -2.7227 2.1369 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3634 -1.0277 -0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8899 35 1 1.9907 1.5397 2.1546 36 1 0.5496 2.2150 1.3550 37 1 5.1150 7.1292 2.1964 38 1 1.3520 9.1593 2.1024 39 1 3.9595 4.6484 1.0992 40 1 4.2128 3.1252 1.9896 41 1 3.6225 3.4195 -0.9920 42 1 5.1592 2.8978 -0.2599 43 1 3.6590 0.6995 1.8645 44 1 5.6603 -1.0133 3.9112 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037883416.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:18:32 Heat of formation + Delta-G solvation = -55.934736 kcal Electronic energy + Delta-G solvation = -30434.231598 eV Core-core repulsion = 26023.808785 eV Total energy + Delta-G solvation = -4410.422813 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.57951 -49.29990 -40.95280 -39.41051 -37.72667 -34.55308 -33.73015 -32.85617 -31.68245 -31.30652 -29.35322 -28.44896 -25.88031 -24.64361 -23.96912 -23.55671 -23.36066 -20.84273 -20.49082 -18.71580 -18.67896 -18.34591 -17.29918 -17.09886 -16.71473 -16.28207 -16.04323 -15.79995 -15.27316 -15.06548 -14.80529 -14.70311 -14.33980 -14.11056 -13.72494 -13.62635 -13.40888 -13.22474 -13.17539 -12.89913 -12.80366 -12.51244 -12.13895 -11.77304 -11.39004 -11.12018 -11.00950 -10.84234 -10.72901 -10.39239 -10.35065 -10.24592 -10.15114 -10.11287 -9.74831 -9.52957 -9.37050 -9.21416 -8.79657 -8.19276 -6.93654 -5.76824 -3.04620 -0.04355 0.37175 2.41562 2.91500 3.26757 3.32988 3.42277 3.48591 3.50454 3.56904 3.74531 4.08002 4.21171 4.53123 4.59367 4.93146 5.08557 5.20962 5.25789 5.31037 5.40650 5.60166 5.66746 5.72007 5.76524 5.84996 5.88841 5.92453 6.06246 6.13303 6.21188 6.34873 6.41030 6.46973 6.53859 6.64661 6.67469 6.83206 6.84504 6.97501 7.04588 7.08606 7.66464 7.71267 8.21180 8.41721 9.53467 10.10876 10.46014 11.45759 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.011676 B = 0.003736 C = 0.003000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2397.496402 B = 7493.097948 C = 9330.817013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.110 4.110 3 C -0.102 4.102 4 H 0.066 0.934 5 C 0.116 3.884 6 N -0.572 5.572 7 C 0.562 3.438 8 O -0.535 6.535 9 C 0.045 3.955 10 N -0.383 5.383 11 C 0.060 3.940 12 C 0.101 3.899 13 F -0.117 7.117 14 C -0.157 4.157 15 C 0.141 3.859 16 F -0.096 7.096 17 C 0.078 3.922 18 C -0.150 4.150 19 C 0.177 3.823 20 H 0.049 0.951 21 N -0.718 5.718 22 C -0.234 4.234 23 H 0.069 0.931 24 C -0.012 4.012 25 N -0.932 5.932 26 Si 0.902 3.098 27 H -0.281 1.281 28 H -0.293 1.293 29 H -0.293 1.293 30 H 0.053 0.947 31 H 0.047 0.953 32 H 0.049 0.951 33 H 0.061 0.939 34 H 0.077 0.923 35 H 0.078 0.922 36 H 0.086 0.914 37 H 0.185 0.815 38 H 0.167 0.833 39 H 0.132 0.868 40 H 0.083 0.917 41 H 0.043 0.957 42 H 0.073 0.927 43 H 0.383 0.617 44 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.317 16.987 -3.924 18.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.148 4.148 3 C -0.122 4.122 4 H 0.084 0.916 5 C -0.006 4.006 6 N -0.302 5.302 7 C 0.347 3.653 8 O -0.413 6.413 9 C -0.093 4.093 10 N -0.093 5.093 11 C -0.101 4.101 12 C 0.079 3.921 13 F -0.095 7.095 14 C -0.184 4.184 15 C 0.118 3.882 16 F -0.074 7.074 17 C -0.044 4.044 18 C -0.191 4.191 19 C 0.066 3.934 20 H 0.067 0.933 21 N -0.360 5.360 22 C -0.365 4.365 23 H 0.087 0.913 24 C -0.208 4.208 25 N -0.581 5.581 26 Si 0.734 3.266 27 H -0.207 1.207 28 H -0.220 1.220 29 H -0.221 1.221 30 H 0.072 0.928 31 H 0.066 0.934 32 H 0.068 0.932 33 H 0.080 0.920 34 H 0.095 0.905 35 H 0.097 0.903 36 H 0.105 0.895 37 H 0.202 0.798 38 H 0.185 0.815 39 H 0.148 0.852 40 H 0.101 0.899 41 H 0.062 0.938 42 H 0.092 0.908 43 H 0.219 0.781 44 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -6.359 16.076 -4.012 17.748 hybrid contribution 0.438 0.520 0.347 0.764 sum -5.921 16.596 -3.665 17.998 Atomic orbital electron populations 1.21853 0.96812 1.01017 1.01376 1.21407 0.94257 0.95706 1.03390 1.21793 0.97523 0.96080 0.96809 0.91577 1.21807 0.98829 0.81236 0.98731 1.47995 1.09624 1.05714 1.66850 1.17505 0.86205 0.82771 0.78827 1.90828 1.12771 1.84926 1.52726 1.21731 0.89692 0.94561 1.03343 1.68109 1.08091 1.25066 1.08039 1.23401 1.02371 0.85923 0.98376 1.18756 0.90246 0.82963 1.00176 1.91587 1.81521 1.44622 1.91795 1.21667 0.94124 0.98944 1.03699 1.18267 0.79139 0.92710 0.98113 1.91662 1.27287 1.96667 1.91758 1.22982 0.77598 1.04838 0.98950 1.22547 1.01615 0.98927 0.96021 1.20306 0.89604 0.90962 0.92481 0.93316 1.42459 1.18922 1.64023 1.10606 1.19259 0.93497 1.26727 0.97055 0.91255 1.24681 0.98464 1.01587 0.96036 1.69658 1.37948 1.48242 1.02243 0.86187 0.84415 0.78903 0.77084 1.20675 1.22029 1.22053 0.92781 0.93370 0.93168 0.92007 0.90468 0.90338 0.89527 0.79765 0.81535 0.85200 0.89920 0.93803 0.90819 0.78147 0.93648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.10 9.67 37.15 0.36 -1.74 16 2 C -0.11 -1.76 5.21 -26.74 -0.14 -1.90 16 3 C -0.10 -1.69 2.15 -90.34 -0.19 -1.88 16 4 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 5 C 0.12 1.98 5.03 -3.71 -0.02 1.97 16 6 N -0.57 -9.62 2.97 -173.87 -0.52 -10.14 16 7 C 0.56 9.38 7.65 -12.32 -0.09 9.29 16 8 O -0.53 -10.09 14.78 5.32 0.08 -10.02 16 9 C 0.05 0.62 6.61 -82.96 -0.55 0.07 16 10 N -0.38 -4.66 6.06 -9.70 -0.06 -4.72 16 11 C 0.06 0.54 11.17 -17.47 -0.20 0.34 16 12 C 0.10 0.83 7.35 -39.12 -0.29 0.54 16 13 F -0.12 -0.92 17.28 2.25 0.04 -0.88 16 14 C -0.16 -1.33 10.14 -39.18 -0.40 -1.73 16 15 C 0.14 1.66 7.30 -38.84 -0.28 1.37 16 16 F -0.10 -1.29 15.58 2.25 0.04 -1.25 16 17 C 0.08 1.29 5.65 -3.71 -0.02 1.27 16 18 C -0.15 -2.54 5.78 -26.61 -0.15 -2.69 16 19 C 0.18 3.31 2.54 -67.73 -0.17 3.14 16 20 H 0.05 0.95 8.08 -51.93 -0.42 0.53 16 21 N -0.72 -16.44 3.73 -53.23 -0.20 -16.64 16 22 C -0.23 -6.08 9.93 -15.06 -0.15 -6.23 16 23 H 0.07 1.77 7.83 -52.48 -0.41 1.36 16 24 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 25 N -0.93 -27.00 13.06 55.49 0.72 -26.27 16 26 Si 0.90 21.71 29.55 -169.99 -5.02 16.69 16 27 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 28 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 29 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 30 H 0.05 0.74 6.69 -51.93 -0.35 0.40 16 31 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.08 1.43 7.71 -51.93 -0.40 1.03 16 35 H 0.08 1.48 6.64 -51.93 -0.34 1.14 16 36 H 0.09 1.47 5.71 -51.93 -0.30 1.17 16 37 H 0.19 1.13 8.06 -52.49 -0.42 0.71 16 38 H 0.17 0.95 8.06 -52.49 -0.42 0.53 16 39 H 0.13 1.92 3.94 -88.43 -0.35 1.57 16 40 H 0.08 1.62 7.74 -51.93 -0.40 1.22 16 41 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 43 H 0.38 9.44 5.95 -40.82 -0.24 9.20 16 44 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 LS Contribution 359.59 15.07 5.42 5.42 Total: -1.00 -30.04 359.59 -7.62 -37.66 By element: Atomic # 1 Polarization: 14.48 SS G_CDS: -5.73 Total: 8.75 kcal Atomic # 6 Polarization: 3.80 SS G_CDS: -2.39 Total: 1.40 kcal Atomic # 7 Polarization: -57.72 SS G_CDS: -0.05 Total: -57.77 kcal Atomic # 8 Polarization: -10.09 SS G_CDS: 0.08 Total: -10.02 kcal Atomic # 9 Polarization: -2.21 SS G_CDS: 0.07 Total: -2.13 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -30.04 -7.62 -37.66 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037883416.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.273 kcal (2) G-P(sol) polarization free energy of solvation -30.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds