Wall clock time and date at job start Tue Mar 31 2020 22:18:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52995 * 109.47428 * 2 1 4 4 H 1.09005 * 109.52312 * 304.91916 * 3 2 1 5 5 C 1.53192 * 109.49753 * 64.99884 * 3 2 1 6 6 N 1.46934 * 108.89272 * 174.65998 * 5 3 2 7 7 C 1.34774 * 120.62762 * 126.30014 * 6 5 3 8 8 O 1.21552 * 120.00182 * 352.08568 * 7 6 5 9 9 C 1.47878 * 119.99778 * 172.08383 * 7 6 5 10 10 N 1.32847 * 119.71935 * 352.67705 * 9 7 6 11 11 C 1.31370 * 121.68362 * 179.97438 * 10 9 7 12 12 C 1.38996 * 120.93499 * 359.97438 * 11 10 9 13 13 F 1.35101 * 120.32767 * 180.02562 * 12 11 10 14 14 C 1.38719 * 119.34647 * 0.02562 * 12 11 10 15 15 C 1.38836 * 118.44425 * 359.72887 * 14 12 11 16 16 F 1.35099 * 120.48361 * 180.29009 * 15 14 12 17 17 C 1.46921 * 118.73778 * 306.31754 * 6 5 3 18 18 C 1.53199 * 108.77458 * 53.61543 * 17 6 5 19 19 C 1.53041 * 109.30857 * 305.35990 * 18 17 6 20 20 H 1.09003 * 109.46420 * 181.37231 * 19 18 17 21 21 N 1.46496 * 109.46457 * 301.34434 * 19 18 17 22 22 C 1.36933 * 120.00290 * 275.00718 * 21 19 18 23 23 H 1.08003 * 120.00331 * 359.97438 * 22 21 19 24 24 C 1.38809 * 120.00325 * 179.97438 * 22 21 19 25 25 N 1.31620 * 120.00092 * 359.97438 * 24 22 21 26 26 Si 1.86808 * 120.00194 * 179.97438 * 24 22 21 27 27 H 1.48501 * 109.46946 * 359.97438 * 26 24 22 28 28 H 1.48500 * 109.46919 * 119.99691 * 26 24 22 29 29 H 1.48501 * 109.47027 * 239.99618 * 26 24 22 30 30 H 1.08994 * 109.47012 * 299.99833 * 1 2 3 31 31 H 1.08998 * 109.47232 * 59.99823 * 1 2 3 32 32 H 1.09001 * 109.47209 * 179.97438 * 1 2 3 33 33 H 1.09006 * 109.47347 * 239.99956 * 2 1 3 34 34 H 1.08998 * 109.47232 * 120.00177 * 2 1 3 35 35 H 1.08994 * 109.58581 * 54.80103 * 5 3 2 36 36 H 1.08994 * 109.58695 * 294.52109 * 5 3 2 37 37 H 1.08000 * 119.52821 * 179.97438 * 11 10 9 38 38 H 1.08001 * 120.77802 * 180.02562 * 14 12 11 39 39 H 1.08995 * 109.58628 * 173.39585 * 17 6 5 40 40 H 1.08996 * 109.58865 * 293.82792 * 17 6 5 41 41 H 1.08997 * 109.50071 * 65.30814 * 18 17 6 42 42 H 1.09002 * 109.49590 * 185.38076 * 18 17 6 43 43 H 0.97004 * 120.00012 * 95.00097 * 21 19 18 44 44 H 0.97001 * 120.00394 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6070 1.9819 -0.8424 5 6 1.6351 2.1279 1.3088 6 7 2.2389 3.4668 1.3512 7 6 1.4765 4.5575 1.5646 8 8 0.2651 4.4585 1.5807 9 6 2.1137 5.8745 1.7792 10 7 3.4336 5.9547 1.9062 11 6 4.0399 7.1044 2.0974 12 6 3.3171 8.2892 2.1741 13 9 3.9532 9.4648 2.3706 14 6 1.9363 8.2527 2.0469 15 6 1.3235 7.0241 1.8404 16 9 -0.0182 6.9416 1.7050 17 6 3.6896 3.5939 1.1562 18 6 4.0746 2.8939 -0.1510 19 6 3.5688 1.4498 -0.1197 20 1 3.8626 0.9421 -1.0384 21 7 4.1510 0.7535 1.0302 22 6 5.3898 0.1791 0.9275 23 1 5.9375 0.2389 -0.0014 24 6 5.9417 -0.4803 2.0173 25 7 5.2745 -0.5529 3.1495 26 14 7.6313 -1.2646 1.8769 27 1 8.1671 -1.0444 0.5095 28 1 8.5463 -0.6506 2.8724 29 1 7.5233 -2.7227 2.1369 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3634 -1.0277 -0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8899 35 1 1.9907 1.5397 2.1546 36 1 0.5496 2.2150 1.3550 37 1 5.1150 7.1292 2.1964 38 1 1.3520 9.1593 2.1024 39 1 3.9595 4.6484 1.0992 40 1 4.2128 3.1252 1.9896 41 1 3.6225 3.4195 -0.9920 42 1 5.1592 2.8978 -0.2599 43 1 3.6590 0.6995 1.8645 44 1 5.6603 -1.0133 3.9112 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001037883416.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:18:31 Heat of formation + Delta-G solvation = -72.912672 kcal Electronic energy + Delta-G solvation = -30434.967817 eV Core-core repulsion = 26023.808785 eV Total energy + Delta-G solvation = -4411.159032 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -50.26560 -50.23282 -42.01547 -40.57900 -39.12679 -35.96980 -35.36432 -33.72915 -33.37451 -32.23753 -30.97786 -29.87368 -27.11733 -25.72527 -25.45513 -24.92459 -24.60522 -22.19589 -21.67780 -20.04306 -19.55253 -19.31800 -19.19478 -18.25988 -17.58762 -17.28737 -17.10260 -16.71777 -16.54841 -16.33477 -16.16152 -15.77192 -15.66702 -15.55357 -15.02475 -14.85619 -14.71533 -14.47305 -14.43554 -14.15094 -14.09896 -13.68995 -13.51954 -13.03545 -12.88057 -12.86275 -12.64563 -12.36677 -12.21126 -12.03342 -11.82192 -11.60119 -11.46002 -11.44748 -11.11837 -11.11092 -10.91395 -10.24504 -10.16698 -9.58782 -8.87598 -7.85610 -5.11491 -0.92184 -0.38343 1.38248 1.50429 1.51792 1.60421 1.77508 2.29738 2.43123 2.62170 2.72798 2.82025 3.26679 3.37103 3.48648 3.70160 3.82139 3.87670 4.07395 4.12454 4.17167 4.30868 4.44085 4.44664 4.46840 4.51073 4.60195 4.63661 4.71173 4.88285 4.99326 5.06713 5.08602 5.18137 5.19298 5.25010 5.34601 5.39510 5.51788 5.54361 5.63498 5.71279 6.16772 6.35973 6.37944 6.92261 7.43557 8.19759 8.43910 9.38025 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.011676 B = 0.003736 C = 0.003000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2397.496402 B = 7493.097948 C = 9330.817013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.104 4.104 3 C -0.091 4.091 4 H 0.083 0.917 5 C 0.122 3.878 6 N -0.577 5.577 7 C 0.558 3.442 8 O -0.563 6.563 9 C 0.020 3.980 10 N -0.406 5.406 11 C 0.072 3.928 12 C 0.121 3.879 13 F -0.107 7.107 14 C -0.137 4.137 15 C 0.132 3.868 16 F -0.110 7.110 17 C 0.088 3.912 18 C -0.143 4.143 19 C 0.171 3.829 20 H 0.046 0.954 21 N -0.723 5.723 22 C -0.223 4.223 23 H 0.075 0.925 24 C -0.072 4.072 25 N -0.969 5.969 26 Si 0.962 3.038 27 H -0.267 1.267 28 H -0.298 1.298 29 H -0.301 1.301 30 H 0.049 0.951 31 H 0.062 0.938 32 H 0.060 0.940 33 H 0.063 0.937 34 H 0.045 0.955 35 H 0.052 0.948 36 H 0.088 0.912 37 H 0.215 0.785 38 H 0.200 0.800 39 H 0.157 0.843 40 H 0.046 0.954 41 H 0.067 0.933 42 H 0.067 0.933 43 H 0.373 0.627 44 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.790 19.600 -5.238 21.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.143 4.143 3 C -0.111 4.111 4 H 0.101 0.899 5 C -0.001 4.001 6 N -0.306 5.306 7 C 0.346 3.654 8 O -0.443 6.443 9 C -0.116 4.116 10 N -0.116 5.116 11 C -0.090 4.090 12 C 0.099 3.901 13 F -0.085 7.085 14 C -0.163 4.163 15 C 0.109 3.891 16 F -0.088 7.088 17 C -0.034 4.034 18 C -0.183 4.183 19 C 0.062 3.938 20 H 0.064 0.936 21 N -0.364 5.364 22 C -0.356 4.356 23 H 0.093 0.907 24 C -0.264 4.264 25 N -0.621 5.621 26 Si 0.793 3.207 27 H -0.191 1.191 28 H -0.226 1.226 29 H -0.229 1.229 30 H 0.068 0.932 31 H 0.081 0.919 32 H 0.079 0.921 33 H 0.082 0.918 34 H 0.064 0.936 35 H 0.070 0.930 36 H 0.106 0.894 37 H 0.232 0.768 38 H 0.217 0.783 39 H 0.172 0.828 40 H 0.064 0.936 41 H 0.085 0.915 42 H 0.085 0.915 43 H 0.206 0.794 44 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -5.839 18.713 -5.379 20.327 hybrid contribution 0.285 -0.125 0.749 0.811 sum -5.554 18.588 -4.631 19.945 Atomic orbital electron populations 1.21784 0.94695 1.01970 1.01876 1.21328 0.96093 0.95004 1.01834 1.21701 0.95923 0.96518 0.96944 0.89900 1.21635 0.98762 0.81614 0.98067 1.48024 1.09685 1.05684 1.67257 1.17974 0.85967 0.83792 0.77707 1.90794 1.13986 1.85698 1.53847 1.21245 0.90604 0.93471 1.06300 1.67789 1.07538 1.26890 1.09395 1.23851 1.03606 0.85112 0.96466 1.18642 0.90024 0.82928 0.98544 1.91629 1.81329 1.44085 1.91451 1.21902 0.94375 0.98655 1.01416 1.18362 0.78507 0.93303 0.98902 1.91627 1.28330 1.96791 1.92049 1.22941 0.77167 1.06081 0.97214 1.22433 1.01244 0.97558 0.97093 1.20524 0.90980 0.91650 0.90653 0.93615 1.42558 1.18153 1.64277 1.11374 1.19604 0.94188 1.25007 0.96764 0.90717 1.25358 1.01743 1.03275 0.96057 1.69816 1.39469 1.49955 1.02870 0.85221 0.80756 0.77289 0.77391 1.19121 1.22557 1.22891 0.93202 0.91860 0.92054 0.91838 0.93632 0.92991 0.89411 0.76804 0.78329 0.82764 0.93569 0.91468 0.91465 0.79402 0.94466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.91 9.67 71.98 0.70 -3.21 16 2 C -0.10 -3.39 5.21 30.59 0.16 -3.23 16 3 C -0.09 -3.01 2.15 -10.61 -0.02 -3.04 16 4 H 0.08 2.51 8.14 -2.38 -0.02 2.49 16 5 C 0.12 4.31 5.03 86.36 0.43 4.74 16 6 N -0.58 -19.74 2.97 -822.28 -2.44 -22.19 16 7 C 0.56 18.81 7.65 86.80 0.66 19.47 16 8 O -0.56 -21.63 14.78 -3.88 -0.06 -21.68 16 9 C 0.02 0.54 6.61 41.88 0.28 0.82 16 10 N -0.41 -9.22 6.06 -184.61 -1.12 -10.34 16 11 C 0.07 1.05 11.17 84.94 0.95 2.00 16 12 C 0.12 1.52 7.35 22.57 0.17 1.68 16 13 F -0.11 -1.21 17.28 44.97 0.78 -0.44 16 14 C -0.14 -1.85 10.14 22.53 0.23 -1.62 16 15 C 0.13 2.90 7.30 22.75 0.17 3.07 16 16 F -0.11 -2.87 15.58 44.97 0.70 -2.17 16 17 C 0.09 2.91 5.65 86.37 0.49 3.40 16 18 C -0.14 -4.72 5.78 30.67 0.18 -4.54 16 19 C 0.17 6.41 2.54 45.12 0.11 6.52 16 20 H 0.05 1.75 8.08 -2.39 -0.02 1.73 16 21 N -0.72 -34.03 3.73 -322.32 -1.20 -35.23 16 22 C -0.22 -11.74 9.93 84.03 0.83 -10.91 16 23 H 0.07 3.79 7.83 -2.91 -0.02 3.77 16 24 C -0.07 -4.01 5.50 84.86 0.47 -3.55 16 25 N -0.97 -58.08 13.06 21.65 0.28 -57.79 16 26 Si 0.96 45.29 29.55 68.60 2.03 47.32 16 27 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 28 H -0.30 -14.13 7.11 99.48 0.71 -13.43 16 29 H -0.30 -14.43 7.11 99.48 0.71 -13.73 16 30 H 0.05 1.37 6.69 -2.39 -0.02 1.35 16 31 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 32 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 33 H 0.06 2.02 8.14 -2.38 -0.02 2.00 16 34 H 0.04 1.77 7.71 -2.39 -0.02 1.75 16 35 H 0.05 2.11 6.64 -2.39 -0.02 2.09 16 36 H 0.09 3.08 5.71 -2.39 -0.01 3.06 16 37 H 0.22 1.77 8.06 -2.91 -0.02 1.75 16 38 H 0.20 1.37 8.06 -2.91 -0.02 1.35 16 39 H 0.16 4.42 3.94 -74.46 -0.29 4.13 16 40 H 0.05 1.88 7.74 -2.39 -0.02 1.86 16 41 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 42 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 43 H 0.37 19.28 5.95 -92.71 -0.55 18.72 16 44 H 0.25 14.50 8.31 -92.71 -0.77 13.73 16 Total: -1.00 -67.13 359.59 4.98 -62.15 By element: Atomic # 1 Polarization: 28.55 SS G_CDS: 0.22 Total: 28.77 kcal Atomic # 6 Polarization: 5.81 SS G_CDS: 5.80 Total: 11.61 kcal Atomic # 7 Polarization: -121.07 SS G_CDS: -4.48 Total: -125.55 kcal Atomic # 8 Polarization: -21.63 SS G_CDS: -0.06 Total: -21.68 kcal Atomic # 9 Polarization: -4.08 SS G_CDS: 1.48 Total: -2.60 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 2.03 Total: 47.32 kcal Total: -67.13 4.98 -62.15 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037883416.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.766 kcal (2) G-P(sol) polarization free energy of solvation -67.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds