Wall clock time and date at job start Tue Mar 31 2020 22:18:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52993 * 109.47077 * 2 1 4 4 H 1.09010 * 109.49929 * 55.06740 * 3 2 1 5 5 C 1.53191 * 109.49931 * 294.99898 * 3 2 1 6 6 N 1.46932 * 108.77537 * 185.41382 * 5 3 2 7 7 C 1.34771 * 120.62711 * 233.59001 * 6 5 3 8 8 O 1.21547 * 120.00678 * 356.15737 * 7 6 5 9 9 C 1.47883 * 119.99647 * 176.16292 * 7 6 5 10 10 N 1.32847 * 119.71900 * 40.05086 * 9 7 6 11 11 C 1.31371 * 121.68487 * 179.74754 * 10 9 7 12 12 C 1.39003 * 120.93467 * 0.53480 * 11 10 9 13 13 F 1.35098 * 120.33095 * 179.76035 * 12 11 10 14 14 C 1.38723 * 119.34042 * 359.73074 * 12 11 10 15 15 C 1.38828 * 118.44933 * 0.02562 * 14 12 11 16 16 F 1.35099 * 120.48776 * 180.02562 * 15 14 12 17 17 C 1.46927 * 118.73843 * 53.60871 * 6 5 3 18 18 C 1.53195 * 108.77569 * 306.39087 * 17 6 5 19 19 C 1.53041 * 109.49674 * 175.16165 * 3 2 1 20 20 H 1.09007 * 109.45707 * 301.33687 * 19 3 2 21 21 N 1.46498 * 109.46304 * 61.29689 * 19 3 2 22 22 C 1.36929 * 120.00248 * 205.00359 * 21 19 3 23 23 H 1.08004 * 120.00305 * 359.97438 * 22 21 19 24 24 C 1.38816 * 120.00156 * 180.02562 * 22 21 19 25 25 N 1.31613 * 119.99738 * 359.97438 * 24 22 21 26 26 Si 1.86802 * 120.00052 * 179.97438 * 24 22 21 27 27 H 1.48500 * 109.47299 * 59.99991 * 26 24 22 28 28 H 1.48500 * 109.46923 * 179.97438 * 26 24 22 29 29 H 1.48498 * 109.47180 * 299.99583 * 26 24 22 30 30 H 1.08996 * 109.47119 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47078 * 59.99566 * 1 2 3 32 32 H 1.08997 * 109.46687 * 299.99956 * 1 2 3 33 33 H 1.09004 * 109.46746 * 120.00134 * 2 1 3 34 34 H 1.08998 * 109.47150 * 239.99783 * 2 1 3 35 35 H 1.08997 * 109.58420 * 305.20126 * 5 3 2 36 36 H 1.08999 * 109.58532 * 65.62621 * 5 3 2 37 37 H 1.08000 * 119.53062 * 180.26038 * 11 10 9 38 38 H 1.07995 * 120.77579 * 179.97438 * 14 12 11 39 39 H 1.08998 * 109.58483 * 66.17725 * 17 6 5 40 40 H 1.08995 * 109.58561 * 186.45970 * 17 6 5 41 41 H 1.08998 * 109.49397 * 174.58212 * 18 17 6 42 42 H 1.08993 * 109.49674 * 294.65224 * 18 17 6 43 43 H 0.97002 * 119.99306 * 24.99826 * 21 19 3 44 44 H 0.96999 * 120.00065 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6066 1.9816 0.8424 5 6 1.6351 2.1280 -1.3088 6 7 2.2416 3.4656 -1.3493 7 6 1.4817 4.5578 -1.5636 8 8 0.2946 4.4366 -1.7950 9 6 2.0922 5.9040 -1.5174 10 7 3.2953 6.1000 -2.0454 11 6 3.8717 7.2804 -2.0302 12 6 3.2438 8.3747 -1.4465 13 9 3.8497 9.5820 -1.4334 14 6 1.9884 8.2147 -0.8782 15 6 1.4018 6.9569 -0.9137 16 9 0.1803 6.7548 -0.3731 17 6 3.6923 3.5898 -1.1521 18 6 4.0742 2.8879 0.1549 19 6 3.5656 1.4448 0.1217 20 1 3.8574 0.9358 1.0404 21 7 4.1481 0.7484 -1.0281 22 6 5.3861 0.1726 -0.9245 23 1 5.9334 0.2321 0.0047 24 6 5.9382 -0.4868 -2.0141 25 7 5.2715 -0.5590 -3.1466 26 14 7.6275 -1.2718 -1.8730 27 1 7.6071 -2.3015 -0.8032 28 1 7.9868 -1.9086 -3.1655 29 1 8.6311 -0.2298 -1.5381 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3632 0.5138 0.8900 33 1 1.8934 -0.5139 0.8900 34 1 1.8934 -0.5139 -0.8899 35 1 1.9909 1.5397 -2.1546 36 1 0.5498 2.2173 -1.3538 37 1 4.8490 7.4014 -2.4734 38 1 1.4797 9.0489 -0.4183 39 1 4.2157 3.1208 -1.9852 40 1 3.9645 4.6438 -1.0964 41 1 5.1586 2.8890 0.2650 42 1 3.6225 3.4141 0.9958 43 1 3.6566 0.6952 -1.8627 44 1 5.6572 -1.0201 -3.9079 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037883418.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:18:35 Heat of formation + Delta-G solvation = -65.802275 kcal Electronic energy + Delta-G solvation = -30446.560401 eV Core-core repulsion = 26035.709699 eV Total energy + Delta-G solvation = -4410.850702 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.57191 -49.37637 -40.92474 -39.47162 -37.77603 -34.54153 -33.75387 -32.87036 -31.72106 -31.33191 -29.41740 -28.49158 -25.90179 -24.60587 -24.01489 -23.63393 -23.40482 -20.88244 -20.45896 -18.69169 -18.63763 -18.43441 -17.38720 -17.24356 -16.74831 -16.30696 -16.14602 -15.74554 -15.32536 -15.09722 -14.77257 -14.67482 -14.37614 -14.05951 -13.76488 -13.68183 -13.40381 -13.26078 -13.20308 -12.97428 -12.82745 -12.51027 -12.18601 -11.72495 -11.42635 -11.09109 -10.98623 -10.81771 -10.74794 -10.50745 -10.37411 -10.28496 -10.22975 -10.19332 -9.79529 -9.64349 -9.53424 -9.33927 -8.89958 -8.27466 -6.96932 -5.78024 -3.06489 0.01638 0.38265 2.42070 2.86872 3.08264 3.27245 3.42301 3.47571 3.48353 3.55402 3.88102 4.08165 4.18234 4.54931 4.58008 4.91807 5.06388 5.15757 5.25340 5.27715 5.35709 5.57326 5.58594 5.64280 5.69398 5.79247 5.83522 5.89156 5.98160 6.09265 6.16344 6.26364 6.37438 6.38752 6.43036 6.56157 6.61380 6.74365 6.76526 6.94032 6.98877 7.07887 7.57381 7.68678 8.15558 8.40211 9.51914 10.08361 10.43630 11.44241 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.011933 B = 0.003719 C = 0.003023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2345.776346 B = 7527.489840 C = 9261.215670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.109 4.109 3 C -0.103 4.103 4 H 0.066 0.934 5 C 0.118 3.882 6 N -0.575 5.575 7 C 0.567 3.433 8 O -0.533 6.533 9 C 0.052 3.948 10 N -0.389 5.389 11 C 0.064 3.936 12 C 0.098 3.902 13 F -0.117 7.117 14 C -0.155 4.155 15 C 0.133 3.867 16 F -0.103 7.103 17 C 0.107 3.893 18 C -0.153 4.153 19 C 0.178 3.822 20 H 0.051 0.949 21 N -0.717 5.717 22 C -0.238 4.238 23 H 0.068 0.932 24 C -0.010 4.010 25 N -0.931 5.931 26 Si 0.904 3.096 27 H -0.287 1.287 28 H -0.292 1.292 29 H -0.287 1.287 30 H 0.050 0.950 31 H 0.053 0.947 32 H 0.047 0.953 33 H 0.062 0.938 34 H 0.077 0.923 35 H 0.080 0.920 36 H 0.088 0.912 37 H 0.185 0.815 38 H 0.167 0.833 39 H 0.090 0.910 40 H 0.090 0.910 41 H 0.075 0.925 42 H 0.045 0.955 43 H 0.384 0.616 44 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.354 16.512 5.798 18.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.147 4.147 3 C -0.123 4.123 4 H 0.085 0.915 5 C -0.004 4.004 6 N -0.305 5.305 7 C 0.352 3.648 8 O -0.410 6.410 9 C -0.087 4.087 10 N -0.099 5.099 11 C -0.097 4.097 12 C 0.076 3.924 13 F -0.095 7.095 14 C -0.182 4.182 15 C 0.110 3.890 16 F -0.081 7.081 17 C -0.015 4.015 18 C -0.194 4.194 19 C 0.068 3.932 20 H 0.069 0.931 21 N -0.360 5.360 22 C -0.370 4.370 23 H 0.086 0.914 24 C -0.206 4.206 25 N -0.580 5.580 26 Si 0.735 3.265 27 H -0.214 1.214 28 H -0.218 1.218 29 H -0.214 1.214 30 H 0.069 0.931 31 H 0.072 0.928 32 H 0.066 0.934 33 H 0.081 0.919 34 H 0.096 0.904 35 H 0.099 0.901 36 H 0.106 0.894 37 H 0.202 0.798 38 H 0.185 0.815 39 H 0.108 0.892 40 H 0.107 0.893 41 H 0.093 0.907 42 H 0.063 0.937 43 H 0.219 0.781 44 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -6.435 15.626 5.347 17.725 hybrid contribution 0.515 0.589 0.263 0.826 sum -5.920 16.215 5.610 18.150 Atomic orbital electron populations 1.21862 0.96795 1.01090 1.01372 1.21414 0.94276 0.95582 1.03476 1.21764 0.97534 0.96239 0.96798 0.91542 1.21816 0.98821 0.80996 0.98771 1.47997 1.09254 1.05910 1.67354 1.17505 0.85849 0.82880 0.78583 1.90819 1.14668 1.85683 1.49797 1.21575 0.91923 0.95420 0.99825 1.68056 1.06883 1.22220 1.12714 1.23239 1.01722 0.86246 0.98511 1.18743 0.91778 0.82450 0.99464 1.91583 1.82287 1.41515 1.94145 1.21623 0.95570 0.97876 1.03158 1.18249 0.82284 0.92850 0.95609 1.91634 1.38814 1.95277 1.82354 1.22142 0.78056 1.01623 0.99648 1.22584 1.01862 0.99275 0.95650 1.20225 0.89639 0.90688 0.92669 0.93108 1.42451 1.19028 1.63975 1.10538 1.19157 0.93599 1.27144 0.97058 0.91354 1.24685 0.98454 1.01447 0.96001 1.69633 1.38110 1.47984 1.02231 0.86329 0.84451 0.79178 0.76544 1.21413 1.21822 1.21391 0.93117 0.92752 0.93372 0.91948 0.90386 0.90138 0.89384 0.79818 0.81542 0.89199 0.89257 0.90665 0.93670 0.78081 0.93483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.06 9.67 37.16 0.36 -1.70 16 2 C -0.11 -1.72 5.19 -26.73 -0.14 -1.86 16 3 C -0.10 -1.67 2.14 -90.50 -0.19 -1.86 16 4 H 0.07 1.01 8.14 -51.92 -0.42 0.59 16 5 C 0.12 1.99 5.02 -3.71 -0.02 1.97 16 6 N -0.58 -9.64 2.97 -173.87 -0.52 -10.15 16 7 C 0.57 9.56 7.31 -12.31 -0.09 9.47 16 8 O -0.53 -10.21 15.69 5.32 0.08 -10.13 16 9 C 0.05 0.72 6.01 -82.96 -0.50 0.22 16 10 N -0.39 -4.90 7.26 -9.70 -0.07 -4.97 16 11 C 0.06 0.59 11.17 -17.46 -0.20 0.40 16 12 C 0.10 0.82 7.35 -39.12 -0.29 0.54 16 13 F -0.12 -0.94 17.28 2.25 0.04 -0.90 16 14 C -0.16 -1.34 10.14 -39.18 -0.40 -1.74 16 15 C 0.13 1.58 7.27 -38.84 -0.28 1.30 16 16 F -0.10 -1.36 16.25 2.25 0.04 -1.32 16 17 C 0.11 1.77 5.77 -3.71 -0.02 1.75 16 18 C -0.15 -2.53 5.78 -26.61 -0.15 -2.69 16 19 C 0.18 3.27 2.53 -67.89 -0.17 3.10 16 20 H 0.05 0.97 8.08 -51.93 -0.42 0.55 16 21 N -0.72 -16.24 3.72 -53.38 -0.20 -16.44 16 22 C -0.24 -6.14 9.93 -15.06 -0.15 -6.29 16 23 H 0.07 1.72 7.83 -52.48 -0.41 1.31 16 24 C -0.01 -0.26 5.50 -17.43 -0.10 -0.36 16 25 N -0.93 -26.81 13.06 55.49 0.72 -26.08 16 26 Si 0.90 21.60 29.55 -169.99 -5.02 16.57 16 27 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 28 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 29 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 30 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.05 0.73 6.70 -51.93 -0.35 0.39 16 32 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 33 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 34 H 0.08 1.43 7.69 -51.93 -0.40 1.03 16 35 H 0.08 1.51 6.64 -51.93 -0.34 1.16 16 36 H 0.09 1.48 5.74 -51.93 -0.30 1.18 16 37 H 0.18 1.18 8.06 -52.49 -0.42 0.76 16 38 H 0.17 0.97 8.06 -52.49 -0.42 0.55 16 39 H 0.09 1.75 7.74 -51.93 -0.40 1.35 16 40 H 0.09 1.33 4.56 -51.93 -0.24 1.09 16 41 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 42 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.38 9.35 5.94 -40.82 -0.24 9.11 16 44 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 LS Contribution 362.08 15.07 5.46 5.46 Total: -1.00 -29.76 362.08 -7.42 -37.18 By element: Atomic # 1 Polarization: 14.15 SS G_CDS: -5.62 Total: 8.53 kcal Atomic # 6 Polarization: 4.59 SS G_CDS: -2.33 Total: 2.25 kcal Atomic # 7 Polarization: -57.58 SS G_CDS: -0.06 Total: -57.64 kcal Atomic # 8 Polarization: -10.21 SS G_CDS: 0.08 Total: -10.13 kcal Atomic # 9 Polarization: -2.30 SS G_CDS: 0.08 Total: -2.22 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -29.76 -7.42 -37.18 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037883418.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.618 kcal (2) G-P(sol) polarization free energy of solvation -29.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds