Wall clock time and date at job start Tue Mar 31 2020 22:18:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52993 * 109.47077 * 2 1 4 4 H 1.09010 * 109.49929 * 55.06740 * 3 2 1 5 5 C 1.53191 * 109.49931 * 294.99898 * 3 2 1 6 6 N 1.46932 * 108.77537 * 185.41382 * 5 3 2 7 7 C 1.34771 * 120.62711 * 233.59001 * 6 5 3 8 8 O 1.21547 * 120.00678 * 356.15737 * 7 6 5 9 9 C 1.47883 * 119.99647 * 176.16292 * 7 6 5 10 10 N 1.32847 * 119.71900 * 40.05086 * 9 7 6 11 11 C 1.31371 * 121.68487 * 179.74754 * 10 9 7 12 12 C 1.39003 * 120.93467 * 0.53480 * 11 10 9 13 13 F 1.35098 * 120.33095 * 179.76035 * 12 11 10 14 14 C 1.38723 * 119.34042 * 359.73074 * 12 11 10 15 15 C 1.38828 * 118.44933 * 0.02562 * 14 12 11 16 16 F 1.35099 * 120.48776 * 180.02562 * 15 14 12 17 17 C 1.46927 * 118.73843 * 53.60871 * 6 5 3 18 18 C 1.53195 * 108.77569 * 306.39087 * 17 6 5 19 19 C 1.53041 * 109.49674 * 175.16165 * 3 2 1 20 20 H 1.09007 * 109.45707 * 301.33687 * 19 3 2 21 21 N 1.46498 * 109.46304 * 61.29689 * 19 3 2 22 22 C 1.36929 * 120.00248 * 205.00359 * 21 19 3 23 23 H 1.08004 * 120.00305 * 359.97438 * 22 21 19 24 24 C 1.38816 * 120.00156 * 180.02562 * 22 21 19 25 25 N 1.31613 * 119.99738 * 359.97438 * 24 22 21 26 26 Si 1.86802 * 120.00052 * 179.97438 * 24 22 21 27 27 H 1.48500 * 109.47299 * 59.99991 * 26 24 22 28 28 H 1.48500 * 109.46923 * 179.97438 * 26 24 22 29 29 H 1.48498 * 109.47180 * 299.99583 * 26 24 22 30 30 H 1.08996 * 109.47119 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47078 * 59.99566 * 1 2 3 32 32 H 1.08997 * 109.46687 * 299.99956 * 1 2 3 33 33 H 1.09004 * 109.46746 * 120.00134 * 2 1 3 34 34 H 1.08998 * 109.47150 * 239.99783 * 2 1 3 35 35 H 1.08997 * 109.58420 * 305.20126 * 5 3 2 36 36 H 1.08999 * 109.58532 * 65.62621 * 5 3 2 37 37 H 1.08000 * 119.53062 * 180.26038 * 11 10 9 38 38 H 1.07995 * 120.77579 * 179.97438 * 14 12 11 39 39 H 1.08998 * 109.58483 * 66.17725 * 17 6 5 40 40 H 1.08995 * 109.58561 * 186.45970 * 17 6 5 41 41 H 1.08998 * 109.49397 * 174.58212 * 18 17 6 42 42 H 1.08993 * 109.49674 * 294.65224 * 18 17 6 43 43 H 0.97002 * 119.99306 * 24.99826 * 21 19 3 44 44 H 0.96999 * 120.00065 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6066 1.9816 0.8424 5 6 1.6351 2.1280 -1.3088 6 7 2.2416 3.4656 -1.3493 7 6 1.4817 4.5578 -1.5636 8 8 0.2946 4.4366 -1.7950 9 6 2.0922 5.9040 -1.5174 10 7 3.2953 6.1000 -2.0454 11 6 3.8717 7.2804 -2.0302 12 6 3.2438 8.3747 -1.4465 13 9 3.8497 9.5820 -1.4334 14 6 1.9884 8.2147 -0.8782 15 6 1.4018 6.9569 -0.9137 16 9 0.1803 6.7548 -0.3731 17 6 3.6923 3.5898 -1.1521 18 6 4.0742 2.8879 0.1549 19 6 3.5656 1.4448 0.1217 20 1 3.8574 0.9358 1.0404 21 7 4.1481 0.7484 -1.0281 22 6 5.3861 0.1726 -0.9245 23 1 5.9334 0.2321 0.0047 24 6 5.9382 -0.4868 -2.0141 25 7 5.2715 -0.5590 -3.1466 26 14 7.6275 -1.2718 -1.8730 27 1 7.6071 -2.3015 -0.8032 28 1 7.9868 -1.9086 -3.1655 29 1 8.6311 -0.2298 -1.5381 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3632 0.5138 0.8900 33 1 1.8934 -0.5139 0.8900 34 1 1.8934 -0.5139 -0.8899 35 1 1.9909 1.5397 -2.1546 36 1 0.5498 2.2173 -1.3538 37 1 4.8490 7.4014 -2.4734 38 1 1.4797 9.0489 -0.4183 39 1 4.2157 3.1208 -1.9852 40 1 3.9645 4.6438 -1.0964 41 1 5.1586 2.8890 0.2650 42 1 3.6225 3.4141 0.9958 43 1 3.6566 0.6952 -1.8627 44 1 5.6572 -1.0201 -3.9079 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001037883418.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:18:35 Heat of formation + Delta-G solvation = -82.658638 kcal Electronic energy + Delta-G solvation = -30447.291348 eV Core-core repulsion = 26035.709699 eV Total energy + Delta-G solvation = -4411.581649 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -50.31065 -50.25529 -42.00499 -40.62798 -39.17115 -35.97928 -35.36128 -33.72311 -33.40024 -32.26822 -31.02428 -29.90685 -27.14191 -25.72403 -25.39961 -25.01106 -24.66989 -22.22742 -21.63532 -20.01040 -19.51283 -19.37008 -19.21368 -18.49805 -17.73601 -17.24667 -17.12492 -16.66380 -16.56586 -16.37151 -16.16507 -15.82931 -15.63827 -15.56305 -15.10329 -14.79965 -14.62663 -14.48165 -14.45092 -14.26388 -14.07757 -13.71263 -13.54030 -13.05808 -12.89664 -12.78811 -12.65068 -12.37716 -12.16355 -12.10665 -11.84195 -11.64181 -11.55365 -11.44653 -11.14632 -11.09978 -10.93230 -10.61273 -10.22559 -9.67536 -8.89439 -7.85266 -5.11588 -0.85757 -0.37969 1.30106 1.51855 1.52968 1.58815 1.71044 2.14636 2.42152 2.62420 2.70955 2.88208 3.26963 3.37630 3.48358 3.71023 3.80719 3.86102 4.03203 4.09160 4.15298 4.27056 4.35949 4.36921 4.43762 4.46058 4.58853 4.61817 4.67736 4.85061 4.94625 4.99662 5.04644 5.15748 5.17771 5.24218 5.26148 5.31330 5.41114 5.51597 5.61400 5.64859 6.20018 6.28561 6.35765 6.85696 7.43619 8.19388 8.43416 9.37783 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.011933 B = 0.003719 C = 0.003023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2345.776346 B = 7527.489840 C = 9261.215670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.104 4.104 3 C -0.092 4.092 4 H 0.086 0.914 5 C 0.123 3.877 6 N -0.579 5.579 7 C 0.564 3.436 8 O -0.564 6.564 9 C 0.026 3.974 10 N -0.414 5.414 11 C 0.073 3.927 12 C 0.117 3.883 13 F -0.107 7.107 14 C -0.135 4.135 15 C 0.125 3.875 16 F -0.115 7.115 17 C 0.118 3.882 18 C -0.144 4.144 19 C 0.172 3.828 20 H 0.050 0.950 21 N -0.723 5.723 22 C -0.228 4.228 23 H 0.075 0.925 24 C -0.071 4.071 25 N -0.968 5.968 26 Si 0.963 3.037 27 H -0.282 1.282 28 H -0.303 1.303 29 H -0.279 1.279 30 H 0.060 0.940 31 H 0.049 0.951 32 H 0.063 0.937 33 H 0.064 0.936 34 H 0.045 0.955 35 H 0.053 0.947 36 H 0.089 0.911 37 H 0.214 0.786 38 H 0.200 0.800 39 H 0.054 0.946 40 H 0.112 0.888 41 H 0.068 0.932 42 H 0.071 0.929 43 H 0.373 0.627 44 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.916 19.049 7.595 21.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.143 4.143 3 C -0.112 4.112 4 H 0.104 0.896 5 C 0.001 3.999 6 N -0.308 5.308 7 C 0.351 3.649 8 O -0.443 6.443 9 C -0.111 4.111 10 N -0.125 5.125 11 C -0.089 4.089 12 C 0.095 3.905 13 F -0.085 7.085 14 C -0.162 4.162 15 C 0.102 3.898 16 F -0.093 7.093 17 C -0.004 4.004 18 C -0.185 4.185 19 C 0.064 3.936 20 H 0.068 0.932 21 N -0.364 5.364 22 C -0.360 4.360 23 H 0.093 0.907 24 C -0.263 4.263 25 N -0.620 5.620 26 Si 0.793 3.207 27 H -0.209 1.209 28 H -0.230 1.230 29 H -0.206 1.206 30 H 0.079 0.921 31 H 0.068 0.932 32 H 0.082 0.918 33 H 0.083 0.917 34 H 0.064 0.936 35 H 0.072 0.928 36 H 0.108 0.892 37 H 0.230 0.770 38 H 0.217 0.783 39 H 0.072 0.928 40 H 0.129 0.871 41 H 0.087 0.913 42 H 0.089 0.911 43 H 0.206 0.794 44 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -6.000 18.184 7.202 20.458 hybrid contribution 0.383 -0.040 -0.270 0.470 sum -5.617 18.145 6.931 20.220 Atomic orbital electron populations 1.21795 0.94711 1.02002 1.01900 1.21334 0.96084 0.94907 1.01929 1.21673 0.95932 0.96653 0.96900 0.89579 1.21662 0.98776 0.81258 0.98230 1.48028 1.09313 1.05935 1.67530 1.17983 0.85553 0.84001 0.77395 1.90783 1.16033 1.86464 1.51006 1.21125 0.93201 0.94297 1.02514 1.67937 1.06783 1.24187 1.13589 1.23702 1.02347 0.85363 0.97470 1.18637 0.91360 0.82376 0.98122 1.91624 1.82070 1.40939 1.93880 1.21867 0.95274 0.97252 1.01787 1.18332 0.81962 0.93504 0.95973 1.91604 1.39588 1.95449 1.82632 1.21995 0.77646 1.02607 0.98147 1.22458 1.01498 0.97948 0.96589 1.20446 0.91006 0.91313 0.90879 0.93213 1.42557 1.18256 1.64252 1.11349 1.19525 0.94303 1.25349 0.96796 0.90689 1.25362 1.01713 1.03174 0.96035 1.69798 1.39587 1.49739 1.02828 0.85367 0.81028 0.78409 0.75853 1.20896 1.22952 1.20554 0.92084 0.93225 0.91754 0.91711 0.93608 0.92843 0.89238 0.76987 0.78283 0.92775 0.87086 0.91324 0.91080 0.79356 0.94437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.82 9.67 71.98 0.70 -3.13 16 2 C -0.10 -3.30 5.19 30.59 0.16 -3.14 16 3 C -0.09 -2.95 2.14 -10.72 -0.02 -2.97 16 4 H 0.09 2.47 8.14 -2.38 -0.02 2.46 16 5 C 0.12 4.29 5.02 86.36 0.43 4.72 16 6 N -0.58 -19.67 2.97 -822.27 -2.44 -22.11 16 7 C 0.56 19.17 7.31 86.80 0.63 19.80 16 8 O -0.56 -22.02 15.69 -3.86 -0.06 -22.08 16 9 C 0.03 0.70 6.01 41.88 0.25 0.95 16 10 N -0.41 -9.86 7.26 -184.60 -1.34 -11.20 16 11 C 0.07 1.14 11.17 84.95 0.95 2.09 16 12 C 0.12 1.53 7.35 22.57 0.17 1.70 16 13 F -0.11 -1.25 17.28 44.97 0.78 -0.48 16 14 C -0.14 -1.86 10.14 22.53 0.23 -1.64 16 15 C 0.13 2.75 7.27 22.75 0.17 2.92 16 16 F -0.11 -2.90 16.25 44.97 0.73 -2.17 16 17 C 0.12 3.91 5.77 86.36 0.50 4.41 16 18 C -0.14 -4.65 5.78 30.67 0.18 -4.47 16 19 C 0.17 6.30 2.53 45.02 0.11 6.42 16 20 H 0.05 1.85 8.08 -2.38 -0.02 1.83 16 21 N -0.72 -33.57 3.72 -322.80 -1.20 -34.77 16 22 C -0.23 -11.84 9.93 84.04 0.83 -11.01 16 23 H 0.08 3.74 7.83 -2.91 -0.02 3.72 16 24 C -0.07 -3.89 5.50 84.86 0.47 -3.43 16 25 N -0.97 -57.71 13.06 21.65 0.28 -57.43 16 26 Si 0.96 45.02 29.55 68.60 2.03 47.04 16 27 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 28 H -0.30 -14.56 7.11 99.48 0.71 -13.86 16 29 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 30 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 31 H 0.05 1.33 6.70 -2.39 -0.02 1.32 16 32 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 33 H 0.06 2.00 8.14 -2.38 -0.02 1.98 16 34 H 0.05 1.74 7.69 -2.39 -0.02 1.73 16 35 H 0.05 2.15 6.64 -2.39 -0.02 2.13 16 36 H 0.09 3.09 5.74 -2.39 -0.01 3.07 16 37 H 0.21 1.95 8.06 -2.91 -0.02 1.92 16 38 H 0.20 1.40 8.06 -2.91 -0.02 1.38 16 39 H 0.05 2.19 7.74 -2.39 -0.02 2.17 16 40 H 0.11 3.21 4.56 -2.39 -0.01 3.20 16 41 H 0.07 2.31 8.14 -2.39 -0.02 2.30 16 42 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 43 H 0.37 19.08 5.94 -92.71 -0.55 18.53 16 44 H 0.25 14.54 8.31 -92.71 -0.77 13.77 16 Total: -1.00 -66.50 362.08 5.02 -61.48 By element: Atomic # 1 Polarization: 28.01 SS G_CDS: 0.50 Total: 28.51 kcal Atomic # 6 Polarization: 7.46 SS G_CDS: 5.75 Total: 13.22 kcal Atomic # 7 Polarization: -120.81 SS G_CDS: -4.70 Total: -125.51 kcal Atomic # 8 Polarization: -22.02 SS G_CDS: -0.06 Total: -22.08 kcal Atomic # 9 Polarization: -4.16 SS G_CDS: 1.51 Total: -2.65 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 2.03 Total: 47.04 kcal Total: -66.50 5.02 -61.48 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037883418.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.182 kcal (2) G-P(sol) polarization free energy of solvation -66.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds