Wall clock time and date at job start Tue Mar 31 2020 22:18:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.46754 * 2 1 4 4 H 1.08997 * 109.49654 * 54.93781 * 3 2 1 5 5 C 1.53195 * 109.52675 * 294.85327 * 3 2 1 6 6 N 1.46916 * 108.77477 * 185.39632 * 5 3 2 7 7 C 1.34779 * 120.63442 * 233.58866 * 6 5 3 8 8 O 1.21554 * 119.99475 * 356.16716 * 7 6 5 9 9 C 1.47880 * 120.00506 * 176.16867 * 7 6 5 10 10 N 1.32845 * 119.71624 * 40.15440 * 9 7 6 11 11 C 1.31372 * 121.68624 * 180.02562 * 10 9 7 12 12 C 1.39003 * 120.93262 * 359.97438 * 11 10 9 13 13 F 1.35098 * 120.32919 * 179.97438 * 12 11 10 14 14 C 1.38724 * 119.34446 * 0.02562 * 12 11 10 15 15 C 1.38840 * 118.44264 * 359.73021 * 14 12 11 16 16 F 1.35100 * 120.48425 * 180.28864 * 15 14 12 17 17 C 1.46934 * 118.74097 * 53.61458 * 6 5 3 18 18 C 1.53188 * 108.75969 * 306.38089 * 17 6 5 19 19 C 1.53037 * 109.49530 * 175.00269 * 3 2 1 20 20 H 1.08997 * 109.46331 * 61.34534 * 19 3 2 21 21 N 1.46504 * 109.46145 * 301.37158 * 19 3 2 22 22 C 1.36935 * 120.00260 * 154.97379 * 21 19 3 23 23 H 1.07999 * 119.99887 * 0.02562 * 22 21 19 24 24 C 1.38803 * 120.00207 * 179.97438 * 22 21 19 25 25 N 1.31619 * 119.99916 * 0.02562 * 24 22 21 26 26 Si 1.86801 * 120.00399 * 179.97438 * 24 22 21 27 27 H 1.48496 * 109.47578 * 180.02562 * 26 24 22 28 28 H 1.48498 * 109.47144 * 300.00369 * 26 24 22 29 29 H 1.48499 * 109.46802 * 60.00160 * 26 24 22 30 30 H 1.09007 * 109.46685 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.46837 * 299.99555 * 1 2 3 32 32 H 1.08997 * 109.47237 * 59.99980 * 1 2 3 33 33 H 1.09005 * 109.46970 * 240.00658 * 2 1 3 34 34 H 1.08992 * 109.47627 * 120.00277 * 2 1 3 35 35 H 1.08992 * 109.59049 * 305.19044 * 5 3 2 36 36 H 1.09000 * 109.58354 * 65.46920 * 5 3 2 37 37 H 1.08001 * 119.53079 * 179.97438 * 11 10 9 38 38 H 1.07994 * 120.77979 * 180.02562 * 14 12 11 39 39 H 1.09006 * 109.58369 * 66.17388 * 17 6 5 40 40 H 1.08994 * 109.58711 * 186.45585 * 17 6 5 41 41 H 1.08995 * 109.50968 * 294.69009 * 18 17 6 42 42 H 1.09003 * 109.48309 * 174.59729 * 18 17 6 43 43 H 0.96994 * 119.99381 * 334.97240 * 21 19 3 44 44 H 0.97001 * 120.00325 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6047 1.9822 0.8410 5 6 1.6385 2.1275 -1.3101 6 7 2.2448 3.4651 -1.3495 7 6 1.4855 4.5574 -1.5662 8 8 0.2990 4.4358 -1.8006 9 6 2.0957 5.9036 -1.5190 10 7 3.2993 6.0999 -2.0458 11 6 3.8778 7.2792 -2.0249 12 6 3.2467 8.3744 -1.4465 13 9 3.8530 9.5816 -1.4313 14 6 1.9886 8.2153 -0.8841 15 6 1.3998 6.9586 -0.9256 16 9 0.1733 6.7586 -0.3957 17 6 3.6951 3.5896 -1.1486 18 6 4.0732 2.8883 0.1598 19 6 3.5652 1.4451 0.1257 20 1 4.0008 0.9269 -0.7286 21 7 3.9542 0.7614 1.3616 22 6 5.1922 0.1852 1.4648 23 1 5.8819 0.2352 0.6352 24 6 5.5610 -0.4622 2.6359 25 7 4.7206 -0.5226 3.6471 26 14 7.2495 -1.2488 2.7765 27 1 7.3956 -1.8713 4.1167 28 1 7.3992 -2.2902 1.7285 29 1 8.2958 -0.2106 2.5957 30 1 -0.3633 -1.0278 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 1.8934 -0.5138 -0.8901 34 1 1.8934 -0.5138 0.8899 35 1 1.9963 1.5391 -2.1548 36 1 0.5530 2.2145 -1.3592 37 1 4.8575 7.3994 -2.4632 38 1 1.4770 9.0505 -0.4291 39 1 4.2207 3.1203 -1.9802 40 1 3.9670 4.6436 -1.0926 41 1 3.6187 3.4143 0.9993 42 1 5.1573 2.8898 0.2729 43 1 3.3349 0.7168 2.1067 44 1 4.9782 -0.9753 4.4654 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037883419.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:18:39 Heat of formation + Delta-G solvation = -68.419423 kcal Electronic energy + Delta-G solvation = -30030.006524 eV Core-core repulsion = 25619.042334 eV Total energy + Delta-G solvation = -4410.964190 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.64346 -49.43914 -41.03484 -39.53069 -37.79046 -34.83407 -33.81800 -32.96388 -31.76883 -31.44070 -29.51324 -28.68760 -25.88775 -24.72940 -24.17144 -23.71359 -22.72278 -20.89447 -20.50609 -19.43343 -18.72780 -18.62873 -17.57377 -17.09601 -16.84109 -16.39280 -16.27412 -15.82348 -15.43947 -15.14900 -14.91856 -14.83513 -14.19314 -14.14379 -13.81937 -13.70963 -13.49140 -13.30950 -13.23303 -13.01585 -12.91744 -12.61601 -12.13433 -11.80366 -11.61564 -11.29774 -10.92642 -10.89444 -10.71241 -10.65171 -10.40090 -10.35549 -10.24435 -10.16688 -9.90507 -9.68268 -9.60759 -9.43399 -8.89393 -8.53267 -6.97389 -5.78559 -3.07316 -0.07781 0.29398 2.28830 2.70289 2.98195 3.17904 3.41844 3.46241 3.46815 3.47630 3.73628 4.00605 4.06350 4.44863 4.56534 4.82951 4.98732 5.08910 5.17768 5.20592 5.28767 5.40837 5.48889 5.58687 5.62211 5.67241 5.75479 5.85182 5.88728 6.05497 6.11926 6.17166 6.33471 6.34287 6.38201 6.44730 6.53205 6.66297 6.82326 6.92201 6.95970 7.04605 7.35807 7.67313 7.98466 8.39602 9.51063 10.08318 10.43357 11.43803 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.012362 B = 0.003270 C = 0.002779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2264.377416 B = 8559.342058 C =10072.723425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.111 4.111 3 C -0.105 4.105 4 H 0.070 0.930 5 C 0.118 3.882 6 N -0.581 5.581 7 C 0.571 3.429 8 O -0.528 6.528 9 C 0.049 3.951 10 N -0.393 5.393 11 C 0.063 3.937 12 C 0.100 3.900 13 F -0.116 7.116 14 C -0.154 4.154 15 C 0.136 3.864 16 F -0.101 7.101 17 C 0.100 3.900 18 C -0.154 4.154 19 C 0.183 3.817 20 H 0.049 0.951 21 N -0.720 5.720 22 C -0.239 4.239 23 H 0.069 0.931 24 C -0.011 4.011 25 N -0.932 5.932 26 Si 0.905 3.095 27 H -0.292 1.292 28 H -0.286 1.286 29 H -0.287 1.287 30 H 0.050 0.950 31 H 0.051 0.949 32 H 0.049 0.951 33 H 0.058 0.942 34 H 0.084 0.916 35 H 0.071 0.929 36 H 0.092 0.908 37 H 0.185 0.815 38 H 0.168 0.832 39 H 0.072 0.928 40 H 0.096 0.904 41 H 0.056 0.944 42 H 0.077 0.923 43 H 0.384 0.616 44 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.029 16.639 -11.905 21.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.149 4.149 3 C -0.125 4.125 4 H 0.088 0.912 5 C -0.004 4.004 6 N -0.312 5.312 7 C 0.356 3.644 8 O -0.404 6.404 9 C -0.090 4.090 10 N -0.103 5.103 11 C -0.098 4.098 12 C 0.078 3.922 13 F -0.094 7.094 14 C -0.181 4.181 15 C 0.114 3.886 16 F -0.079 7.079 17 C -0.023 4.023 18 C -0.195 4.195 19 C 0.073 3.927 20 H 0.067 0.933 21 N -0.360 5.360 22 C -0.370 4.370 23 H 0.087 0.913 24 C -0.207 4.207 25 N -0.580 5.580 26 Si 0.736 3.264 27 H -0.218 1.218 28 H -0.213 1.213 29 H -0.213 1.213 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.068 0.932 33 H 0.076 0.924 34 H 0.103 0.897 35 H 0.089 0.911 36 H 0.111 0.889 37 H 0.202 0.798 38 H 0.186 0.814 39 H 0.090 0.910 40 H 0.114 0.886 41 H 0.075 0.925 42 H 0.095 0.905 43 H 0.218 0.782 44 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -5.112 15.747 -12.384 20.675 hybrid contribution 0.428 0.635 1.005 1.263 sum -4.684 16.382 -11.379 20.489 Atomic orbital electron populations 1.21852 0.96782 1.01096 1.01327 1.21449 0.94385 0.95523 1.03574 1.21798 0.97815 0.96377 0.96507 0.91161 1.21863 0.99487 0.80761 0.98244 1.48009 1.09123 1.06113 1.67924 1.17506 0.85817 0.82868 0.78251 1.90834 1.14609 1.85665 1.49332 1.21497 0.91995 0.95281 1.00276 1.67974 1.06979 1.22371 1.13012 1.23191 1.01615 0.86288 0.98720 1.18730 0.91689 0.82479 0.99271 1.91591 1.82256 1.41489 1.94079 1.21661 0.95540 0.98001 1.02913 1.18244 0.82149 0.92818 0.95432 1.91649 1.38258 1.95288 1.82705 1.22282 0.78373 1.02777 0.98871 1.22730 1.02276 0.99233 0.95241 1.20202 0.90679 0.90580 0.91281 0.93280 1.42400 1.16457 1.64448 1.12719 1.19170 0.91794 1.27424 0.98616 0.91269 1.24714 0.98094 1.01519 0.96420 1.69647 1.35279 1.48346 1.04770 0.86309 0.84173 0.79197 0.76734 1.21775 1.21292 1.21344 0.93121 0.92971 0.93191 0.92361 0.89699 0.91070 0.88946 0.79796 0.81410 0.90964 0.88595 0.92498 0.90477 0.78215 0.93479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.10 9.67 37.16 0.36 -1.74 16 2 C -0.11 -1.77 5.31 -26.73 -0.14 -1.91 16 3 C -0.10 -1.70 1.92 -90.50 -0.17 -1.88 16 4 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 5 C 0.12 1.72 5.32 -3.71 -0.02 1.70 16 6 N -0.58 -8.49 2.97 -173.87 -0.52 -9.01 16 7 C 0.57 8.70 7.32 -12.31 -0.09 8.61 16 8 O -0.53 -9.35 15.68 5.32 0.08 -9.27 16 9 C 0.05 0.61 6.01 -82.96 -0.50 0.12 16 10 N -0.39 -4.22 7.27 -9.70 -0.07 -4.29 16 11 C 0.06 0.49 11.17 -17.46 -0.20 0.30 16 12 C 0.10 0.76 7.35 -39.12 -0.29 0.47 16 13 F -0.12 -0.85 17.28 2.25 0.04 -0.81 16 14 C -0.15 -1.25 10.14 -39.18 -0.40 -1.65 16 15 C 0.14 1.54 7.27 -38.84 -0.28 1.25 16 16 F -0.10 -1.31 16.24 2.25 0.04 -1.27 16 17 C 0.10 1.37 6.03 -3.71 -0.02 1.35 16 18 C -0.15 -2.57 5.66 -26.61 -0.15 -2.72 16 19 C 0.18 3.40 2.19 -67.89 -0.15 3.25 16 20 H 0.05 0.94 8.08 -51.93 -0.42 0.52 16 21 N -0.72 -16.97 4.33 -53.39 -0.23 -17.20 16 22 C -0.24 -6.30 9.93 -15.06 -0.15 -6.45 16 23 H 0.07 1.77 7.83 -52.49 -0.41 1.36 16 24 C -0.01 -0.31 5.50 -17.43 -0.10 -0.41 16 25 N -0.93 -27.39 13.06 55.49 0.72 -26.66 16 26 Si 0.90 21.81 29.55 -169.99 -5.02 16.79 16 27 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 28 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 29 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 30 H 0.05 0.64 8.14 -51.92 -0.42 0.22 16 31 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.05 0.63 6.70 -51.93 -0.35 0.28 16 33 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.08 1.62 7.21 -51.93 -0.37 1.25 16 35 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 36 H 0.09 1.38 5.75 -51.93 -0.30 1.08 16 37 H 0.19 0.86 8.06 -52.49 -0.42 0.43 16 38 H 0.17 0.92 8.06 -52.49 -0.42 0.50 16 39 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 40 H 0.10 1.22 4.56 -51.93 -0.24 0.98 16 41 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 42 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 43 H 0.38 9.81 7.51 -40.82 -0.31 9.50 16 44 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 365.69 15.07 5.51 5.51 Total: -1.00 -30.72 365.69 -7.50 -38.22 By element: Atomic # 1 Polarization: 13.46 SS G_CDS: -5.76 Total: 7.71 kcal Atomic # 6 Polarization: 2.59 SS G_CDS: -2.29 Total: 0.29 kcal Atomic # 7 Polarization: -57.07 SS G_CDS: -0.09 Total: -57.17 kcal Atomic # 8 Polarization: -9.35 SS G_CDS: 0.08 Total: -9.27 kcal Atomic # 9 Polarization: -2.16 SS G_CDS: 0.08 Total: -2.08 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -30.72 -7.50 -38.22 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037883419.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.204 kcal (2) G-P(sol) polarization free energy of solvation -30.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds