Wall clock time and date at job start Tue Mar 31 2020 22:18:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.46754 * 2 1 4 4 H 1.08997 * 109.49654 * 54.93781 * 3 2 1 5 5 C 1.53195 * 109.52675 * 294.85327 * 3 2 1 6 6 N 1.46916 * 108.77477 * 185.39632 * 5 3 2 7 7 C 1.34779 * 120.63442 * 233.58866 * 6 5 3 8 8 O 1.21554 * 119.99475 * 356.16716 * 7 6 5 9 9 C 1.47880 * 120.00506 * 176.16867 * 7 6 5 10 10 N 1.32845 * 119.71624 * 40.15440 * 9 7 6 11 11 C 1.31372 * 121.68624 * 180.02562 * 10 9 7 12 12 C 1.39003 * 120.93262 * 359.97438 * 11 10 9 13 13 F 1.35098 * 120.32919 * 179.97438 * 12 11 10 14 14 C 1.38724 * 119.34446 * 0.02562 * 12 11 10 15 15 C 1.38840 * 118.44264 * 359.73021 * 14 12 11 16 16 F 1.35100 * 120.48425 * 180.28864 * 15 14 12 17 17 C 1.46934 * 118.74097 * 53.61458 * 6 5 3 18 18 C 1.53188 * 108.75969 * 306.38089 * 17 6 5 19 19 C 1.53037 * 109.49530 * 175.00269 * 3 2 1 20 20 H 1.08997 * 109.46331 * 61.34534 * 19 3 2 21 21 N 1.46504 * 109.46145 * 301.37158 * 19 3 2 22 22 C 1.36935 * 120.00260 * 154.97379 * 21 19 3 23 23 H 1.07999 * 119.99887 * 0.02562 * 22 21 19 24 24 C 1.38803 * 120.00207 * 179.97438 * 22 21 19 25 25 N 1.31619 * 119.99916 * 0.02562 * 24 22 21 26 26 Si 1.86801 * 120.00399 * 179.97438 * 24 22 21 27 27 H 1.48496 * 109.47578 * 180.02562 * 26 24 22 28 28 H 1.48498 * 109.47144 * 300.00369 * 26 24 22 29 29 H 1.48499 * 109.46802 * 60.00160 * 26 24 22 30 30 H 1.09007 * 109.46685 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.46837 * 299.99555 * 1 2 3 32 32 H 1.08997 * 109.47237 * 59.99980 * 1 2 3 33 33 H 1.09005 * 109.46970 * 240.00658 * 2 1 3 34 34 H 1.08992 * 109.47627 * 120.00277 * 2 1 3 35 35 H 1.08992 * 109.59049 * 305.19044 * 5 3 2 36 36 H 1.09000 * 109.58354 * 65.46920 * 5 3 2 37 37 H 1.08001 * 119.53079 * 179.97438 * 11 10 9 38 38 H 1.07994 * 120.77979 * 180.02562 * 14 12 11 39 39 H 1.09006 * 109.58369 * 66.17388 * 17 6 5 40 40 H 1.08994 * 109.58711 * 186.45585 * 17 6 5 41 41 H 1.08995 * 109.50968 * 294.69009 * 18 17 6 42 42 H 1.09003 * 109.48309 * 174.59729 * 18 17 6 43 43 H 0.96994 * 119.99381 * 334.97240 * 21 19 3 44 44 H 0.97001 * 120.00325 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6047 1.9822 0.8410 5 6 1.6385 2.1275 -1.3101 6 7 2.2448 3.4651 -1.3495 7 6 1.4855 4.5574 -1.5662 8 8 0.2990 4.4358 -1.8006 9 6 2.0957 5.9036 -1.5190 10 7 3.2993 6.0999 -2.0458 11 6 3.8778 7.2792 -2.0249 12 6 3.2467 8.3744 -1.4465 13 9 3.8530 9.5816 -1.4313 14 6 1.9886 8.2153 -0.8841 15 6 1.3998 6.9586 -0.9256 16 9 0.1733 6.7586 -0.3957 17 6 3.6951 3.5896 -1.1486 18 6 4.0732 2.8883 0.1598 19 6 3.5652 1.4451 0.1257 20 1 4.0008 0.9269 -0.7286 21 7 3.9542 0.7614 1.3616 22 6 5.1922 0.1852 1.4648 23 1 5.8819 0.2352 0.6352 24 6 5.5610 -0.4622 2.6359 25 7 4.7206 -0.5226 3.6471 26 14 7.2495 -1.2488 2.7765 27 1 7.3956 -1.8713 4.1167 28 1 7.3992 -2.2902 1.7285 29 1 8.2958 -0.2106 2.5957 30 1 -0.3633 -1.0278 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 1.8934 -0.5138 -0.8901 34 1 1.8934 -0.5138 0.8899 35 1 1.9963 1.5391 -2.1548 36 1 0.5530 2.2145 -1.3592 37 1 4.8575 7.3994 -2.4632 38 1 1.4770 9.0505 -0.4291 39 1 4.2207 3.1203 -1.9802 40 1 3.9670 4.6436 -1.0926 41 1 3.6187 3.4143 0.9993 42 1 5.1573 2.8898 0.2729 43 1 3.3349 0.7168 2.1067 44 1 4.9782 -0.9753 4.4654 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001037883419.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:18:38 Heat of formation + Delta-G solvation = -86.430181 kcal Electronic energy + Delta-G solvation = -30030.787529 eV Core-core repulsion = 25619.042334 eV Total energy + Delta-G solvation = -4411.745195 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -50.32669 -50.25770 -41.99069 -40.57236 -39.11905 -36.27418 -35.35742 -33.73136 -33.45394 -32.29548 -31.09584 -29.99625 -27.14480 -25.83645 -25.37075 -24.76631 -24.19409 -22.27026 -21.65081 -20.77268 -19.50553 -19.41041 -19.06573 -18.54562 -17.75834 -17.27952 -17.14127 -16.78830 -16.58925 -16.31203 -16.21188 -15.67149 -15.62385 -15.52442 -15.14279 -14.81949 -14.65335 -14.51137 -14.41099 -14.36375 -13.89454 -13.74947 -13.56118 -13.09877 -13.00226 -12.79300 -12.66325 -12.53266 -12.20309 -12.07328 -11.84343 -11.63001 -11.59763 -11.51691 -11.12199 -11.10307 -10.99210 -10.65279 -10.23052 -9.75177 -8.94329 -7.89060 -5.16741 -0.86224 -0.39119 1.28928 1.50132 1.52096 1.57920 1.67480 2.15788 2.41828 2.59627 2.70927 2.85002 3.26450 3.37660 3.44324 3.70276 3.77823 3.78949 3.97916 4.10403 4.16115 4.25478 4.29351 4.34175 4.40872 4.48513 4.58505 4.63872 4.76747 4.78060 4.85842 4.94169 5.00036 5.03880 5.14549 5.21743 5.28986 5.35348 5.45701 5.52051 5.58328 5.63822 6.14873 6.23621 6.31954 6.83899 7.38733 8.14344 8.38094 9.34275 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.012362 B = 0.003270 C = 0.002779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2264.377416 B = 8559.342058 C =10072.723425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.106 4.106 3 C -0.093 4.093 4 H 0.051 0.949 5 C 0.124 3.876 6 N -0.584 5.584 7 C 0.567 3.433 8 O -0.561 6.561 9 C 0.025 3.975 10 N -0.406 5.406 11 C 0.077 3.923 12 C 0.115 3.885 13 F -0.108 7.108 14 C -0.140 4.140 15 C 0.119 3.881 16 F -0.118 7.118 17 C 0.111 3.889 18 C -0.143 4.143 19 C 0.179 3.821 20 H 0.051 0.949 21 N -0.730 5.730 22 C -0.232 4.232 23 H 0.078 0.922 24 C -0.075 4.075 25 N -0.971 5.971 26 Si 0.967 3.033 27 H -0.301 1.301 28 H -0.279 1.279 29 H -0.278 1.278 30 H 0.061 0.939 31 H 0.044 0.956 32 H 0.064 0.936 33 H 0.067 0.933 34 H 0.048 0.952 35 H 0.089 0.911 36 H 0.090 0.910 37 H 0.221 0.779 38 H 0.195 0.805 39 H 0.089 0.911 40 H 0.113 0.887 41 H 0.040 0.960 42 H 0.069 0.931 43 H 0.370 0.630 44 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.749 18.502 -13.908 23.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.144 4.144 3 C -0.113 4.113 4 H 0.070 0.930 5 C 0.002 3.998 6 N -0.314 5.314 7 C 0.354 3.646 8 O -0.439 6.439 9 C -0.112 4.112 10 N -0.117 5.117 11 C -0.085 4.085 12 C 0.093 3.907 13 F -0.086 7.086 14 C -0.167 4.167 15 C 0.096 3.904 16 F -0.096 7.096 17 C -0.011 4.011 18 C -0.184 4.184 19 C 0.070 3.930 20 H 0.069 0.931 21 N -0.369 5.369 22 C -0.363 4.363 23 H 0.096 0.904 24 C -0.267 4.267 25 N -0.622 5.622 26 Si 0.797 3.203 27 H -0.228 1.228 28 H -0.205 1.205 29 H -0.204 1.204 30 H 0.080 0.920 31 H 0.063 0.937 32 H 0.083 0.917 33 H 0.085 0.915 34 H 0.067 0.933 35 H 0.107 0.893 36 H 0.109 0.891 37 H 0.237 0.763 38 H 0.212 0.788 39 H 0.107 0.893 40 H 0.130 0.870 41 H 0.058 0.942 42 H 0.087 0.913 43 H 0.202 0.798 44 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -3.825 17.633 -14.438 23.108 hybrid contribution 0.055 0.200 1.556 1.570 sum -3.770 17.833 -12.882 22.320 Atomic orbital electron populations 1.21789 0.94881 1.01983 1.01720 1.21349 0.96044 0.94886 1.02128 1.21641 0.95967 0.96676 0.97044 0.93020 1.21779 0.99521 0.81068 0.97440 1.48069 1.09428 1.06099 1.67799 1.17923 0.85491 0.83919 0.77306 1.90800 1.16005 1.86383 1.50759 1.21139 0.93321 0.94215 1.02539 1.67909 1.06350 1.23931 1.13476 1.23769 1.02349 0.85209 0.97212 1.18691 0.91228 0.82612 0.98208 1.91625 1.82027 1.41095 1.93862 1.21880 0.95576 0.97359 1.01858 1.18420 0.81865 0.93764 0.96348 1.91603 1.39358 1.95496 1.83161 1.22247 0.77975 1.03573 0.97346 1.22522 1.01402 0.97843 0.96621 1.20421 0.92287 0.91132 0.89123 0.93113 1.42570 1.15500 1.64955 1.13887 1.19566 0.92574 1.25810 0.98390 0.90403 1.25462 1.01511 1.03169 0.96513 1.69815 1.37117 1.50097 1.05183 0.85302 0.80433 0.78453 0.76125 1.22788 1.20513 1.20414 0.92011 0.93654 0.91682 0.91454 0.93340 0.89303 0.89121 0.76264 0.78795 0.89316 0.86965 0.94154 0.91285 0.79810 0.94316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.97 9.67 71.98 0.70 -3.27 16 2 C -0.11 -3.41 5.31 30.60 0.16 -3.25 16 3 C -0.09 -3.06 1.92 -10.72 -0.02 -3.08 16 4 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 5 C 0.12 3.51 5.32 86.37 0.46 3.97 16 6 N -0.58 -16.58 2.97 -822.28 -2.44 -19.02 16 7 C 0.57 17.08 7.32 86.80 0.63 17.71 16 8 O -0.56 -20.02 15.68 -3.89 -0.06 -20.08 16 9 C 0.03 0.61 6.01 41.88 0.25 0.86 16 10 N -0.41 -7.72 7.27 -184.61 -1.34 -9.06 16 11 C 0.08 0.92 11.17 84.95 0.95 1.87 16 12 C 0.11 1.34 7.35 22.57 0.17 1.50 16 13 F -0.11 -1.16 17.28 44.97 0.78 -0.38 16 14 C -0.14 -1.90 10.14 22.53 0.23 -1.67 16 15 C 0.12 2.55 7.27 22.75 0.17 2.72 16 16 F -0.12 -3.06 16.24 44.97 0.73 -2.33 16 17 C 0.11 2.87 6.03 86.36 0.52 3.39 16 18 C -0.14 -4.73 5.66 30.67 0.17 -4.55 16 19 C 0.18 6.66 2.19 45.02 0.10 6.76 16 20 H 0.05 1.89 8.08 -2.39 -0.02 1.87 16 21 N -0.73 -35.23 4.33 -322.82 -1.40 -36.63 16 22 C -0.23 -12.29 9.93 84.03 0.83 -11.46 16 23 H 0.08 3.93 7.83 -2.91 -0.02 3.90 16 24 C -0.07 -4.17 5.50 84.86 0.47 -3.70 16 25 N -0.97 -58.72 13.06 21.65 0.28 -58.44 16 26 Si 0.97 45.20 29.55 68.60 2.03 47.23 16 27 H -0.30 -14.43 7.11 99.48 0.71 -13.72 16 28 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 29 H -0.28 -12.45 7.11 99.48 0.71 -11.75 16 30 H 0.06 1.53 8.14 -2.38 -0.02 1.51 16 31 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 32 H 0.06 1.57 6.70 -2.39 -0.02 1.55 16 33 H 0.07 2.02 8.14 -2.38 -0.02 2.00 16 34 H 0.05 1.92 7.21 -2.39 -0.02 1.91 16 35 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 36 H 0.09 2.65 5.75 -2.39 -0.01 2.64 16 37 H 0.22 0.96 8.06 -2.91 -0.02 0.94 16 38 H 0.19 1.52 8.06 -2.91 -0.02 1.49 16 39 H 0.09 2.05 8.14 -2.38 -0.02 2.03 16 40 H 0.11 2.61 4.56 -2.39 -0.01 2.60 16 41 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 42 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 43 H 0.37 19.74 7.51 -92.71 -0.70 19.05 16 44 H 0.25 14.72 8.31 -92.71 -0.77 13.95 16 Total: -1.00 -68.39 365.69 4.71 -63.68 By element: Atomic # 1 Polarization: 26.90 SS G_CDS: 0.35 Total: 27.25 kcal Atomic # 6 Polarization: 2.00 SS G_CDS: 5.79 Total: 7.78 kcal Atomic # 7 Polarization: -118.25 SS G_CDS: -4.90 Total: -123.15 kcal Atomic # 8 Polarization: -20.02 SS G_CDS: -0.06 Total: -20.08 kcal Atomic # 9 Polarization: -4.22 SS G_CDS: 1.51 Total: -2.71 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 2.03 Total: 47.23 kcal Total: -68.39 4.71 -63.68 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037883419.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.753 kcal (2) G-P(sol) polarization free energy of solvation -68.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.677 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds