Wall clock time and date at job start Wed Apr 1 2020 00:32:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08999 * 109.58868 * 2 1 4 4 C 1.53198 * 109.58355 * 120.28227 * 2 1 3 5 5 C 1.53042 * 109.33709 * 65.14006 * 4 2 1 6 6 H 1.08997 * 109.45759 * 301.35625 * 5 4 2 7 7 N 1.46504 * 109.45838 * 181.40095 * 5 4 2 8 8 C 1.36936 * 120.00269 * 154.99932 * 7 5 4 9 9 H 1.07998 * 119.99570 * 359.97438 * 8 7 5 10 10 C 1.38806 * 120.00299 * 180.02562 * 8 7 5 11 11 N 1.31622 * 119.99925 * 359.97438 * 10 8 7 12 12 Si 1.86796 * 120.00135 * 179.97438 * 10 8 7 13 13 H 1.48505 * 109.46917 * 90.00153 * 12 10 8 14 14 H 1.48500 * 109.47437 * 209.99650 * 12 10 8 15 15 H 1.48500 * 109.47415 * 330.00178 * 12 10 8 16 16 C 1.53101 * 109.50494 * 61.34747 * 5 4 2 17 17 C 1.53195 * 109.32873 * 298.65399 * 16 5 4 18 18 N 1.46923 * 109.59040 * 239.57005 * 2 1 3 19 19 C 1.34776 * 120.63094 * 113.84180 * 18 2 1 20 20 O 1.21555 * 119.99909 * 356.21637 * 19 18 2 21 21 C 1.47834 * 120.00062 * 176.21748 * 19 18 2 22 22 C 1.40019 * 120.56278 * 50.32193 * 21 19 18 23 23 C 1.38361 * 118.29045 * 179.73352 * 22 21 19 24 24 C 1.38353 * 119.30229 * 0.56228 * 23 22 21 25 25 C 1.50703 * 119.46072 * 179.72017 * 24 23 22 26 26 F 1.39902 * 109.46924 * 299.97713 * 25 24 23 27 27 F 1.39898 * 109.47000 * 59.97438 * 25 24 23 28 28 N 1.31924 * 121.07536 * 359.69936 * 24 23 22 29 29 C 1.31693 * 121.88601 * 359.97438 * 28 24 23 30 30 H 1.09002 * 109.47466 * 299.71791 * 1 2 3 31 31 H 1.09001 * 109.47148 * 59.71506 * 1 2 3 32 32 H 1.09004 * 109.47120 * 179.71424 * 1 2 3 33 33 H 1.08999 * 109.49657 * 185.10200 * 4 2 1 34 34 H 1.08990 * 109.49888 * 305.16726 * 4 2 1 35 35 H 0.96997 * 119.99895 * 334.99641 * 7 5 4 36 36 H 0.97002 * 120.00027 * 179.97438 * 11 10 8 37 37 H 1.09006 * 109.49038 * 178.69947 * 16 5 4 38 38 H 1.08998 * 109.52109 * 58.62880 * 16 5 4 39 39 H 1.08998 * 109.58713 * 294.84845 * 17 16 5 40 40 H 1.09001 * 109.70054 * 174.49111 * 17 16 5 41 41 H 1.08002 * 120.85275 * 0.02562 * 22 21 19 42 42 H 1.08004 * 120.34844 * 180.25556 * 23 22 21 43 43 H 1.08992 * 109.47191 * 179.97438 * 25 24 23 44 44 H 1.07998 * 119.71539 * 180.02562 * 29 28 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0434 -0.7278 1.2464 5 6 1.6413 -2.2027 1.1737 6 1 0.5564 -2.2802 1.1030 7 7 2.1021 -2.8942 2.3803 8 6 1.4647 -4.0296 2.8044 9 1 0.6221 -4.4150 2.2496 10 6 1.9009 -4.6845 3.9479 11 7 2.9276 -4.2145 4.6243 12 14 1.0310 -6.2329 4.5267 13 1 1.6682 -7.4208 3.9038 14 1 1.1328 -6.3347 6.0047 15 1 -0.3993 -6.1741 4.1319 16 6 2.2800 -2.8465 -0.0598 17 6 1.7691 -2.1427 -1.3210 18 7 2.0226 -0.7011 -1.1935 19 6 2.6944 -0.0345 -2.1531 20 8 2.8383 1.1696 -2.0695 21 6 3.2564 -0.7678 -3.3072 22 6 2.4608 -1.6540 -4.0435 23 6 3.0333 -2.3112 -5.1181 24 6 4.3640 -2.0830 -5.4205 25 6 4.9929 -2.8018 -6.5863 26 9 4.9191 -4.1832 -6.3772 27 9 4.3099 -2.4710 -7.7615 28 7 5.0910 -1.2462 -4.7054 29 6 4.5901 -0.5924 -3.6778 30 1 -0.3634 0.5094 0.8925 31 1 -0.3633 0.5183 -0.8874 32 1 -0.3633 -1.0277 -0.0051 33 1 3.1296 -0.6488 1.2922 34 1 1.6079 -0.2754 2.1372 35 1 2.8587 -2.5478 2.8787 36 1 3.2322 -4.6719 5.4236 37 1 2.0123 -3.9024 -0.0987 38 1 3.3640 -2.7479 -0.0020 39 1 0.6986 -2.3174 -1.4287 40 1 2.2924 -2.5297 -2.1953 41 1 1.4255 -1.8166 -3.7824 42 1 2.4490 -2.9989 -5.7114 43 1 6.0372 -2.5033 -6.6766 44 1 5.2171 0.0847 -3.1168 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044626298.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:32:33 Heat of formation + Delta-G solvation = -81.956931 kcal Electronic energy + Delta-G solvation = -29528.972984 eV Core-core repulsion = 25117.421764 eV Total energy + Delta-G solvation = -4411.551220 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -49.44717 -47.43054 -41.24014 -39.80759 -37.71548 -34.73514 -33.83947 -32.55923 -32.00922 -31.84998 -29.47186 -27.65087 -27.32877 -24.54213 -24.36206 -23.51961 -22.94365 -21.88915 -20.76958 -18.76108 -18.23965 -18.07921 -17.69330 -17.58262 -17.10171 -16.48871 -16.30930 -15.25585 -15.12230 -14.92381 -14.69990 -14.44705 -14.10674 -14.05558 -13.90492 -13.79265 -13.69296 -13.53312 -13.51629 -13.06290 -12.85494 -12.79919 -12.59359 -11.93339 -11.76449 -11.73187 -11.39836 -11.02411 -10.94682 -10.87244 -10.59061 -10.48752 -10.27214 -10.26043 -9.91522 -9.81664 -9.70933 -9.65007 -8.97007 -8.68951 -7.05027 -5.83872 -3.13595 0.12479 0.67467 2.38077 2.71174 2.90094 3.16828 3.37956 3.43182 3.45175 3.71637 3.91207 4.11777 4.26336 4.36499 4.51328 4.57033 4.59402 4.70941 4.89590 5.02833 5.12634 5.13983 5.20126 5.33591 5.36621 5.45001 5.50606 5.52388 5.62997 5.70700 5.79937 5.94318 5.95285 6.08032 6.17880 6.27946 6.34817 6.42208 6.50014 6.78192 6.94320 7.19567 7.29581 7.61706 7.92840 8.34132 9.45515 10.02295 10.36683 11.38518 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.012481 B = 0.002845 C = 0.002472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2242.813381 B = 9840.712634 C =11322.295636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.142 3.858 3 H 0.098 0.902 4 C -0.134 4.134 5 C 0.179 3.821 6 H 0.052 0.948 7 N -0.723 5.723 8 C -0.242 4.242 9 H 0.070 0.930 10 C -0.012 4.012 11 N -0.931 5.931 12 Si 0.906 3.094 13 H -0.290 1.290 14 H -0.291 1.291 15 H -0.282 1.282 16 C -0.151 4.151 17 C 0.095 3.905 18 N -0.589 5.589 19 C 0.562 3.438 20 O -0.534 6.534 21 C -0.149 4.149 22 C -0.044 4.044 23 C -0.136 4.136 24 C 0.062 3.938 25 C 0.324 3.676 26 F -0.191 7.191 27 F -0.193 7.193 28 N -0.457 5.457 29 C 0.152 3.848 30 H 0.070 0.930 31 H 0.053 0.947 32 H 0.065 0.935 33 H 0.064 0.936 34 H 0.079 0.921 35 H 0.384 0.616 36 H 0.256 0.744 37 H 0.076 0.924 38 H 0.060 0.940 39 H 0.072 0.928 40 H 0.079 0.921 41 H 0.152 0.848 42 H 0.149 0.851 43 H 0.134 0.866 44 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.073 6.233 -21.100 22.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.039 3.961 3 H 0.116 0.884 4 C -0.173 4.173 5 C 0.069 3.931 6 H 0.070 0.930 7 N -0.364 5.364 8 C -0.373 4.373 9 H 0.088 0.912 10 C -0.208 4.208 11 N -0.579 5.579 12 Si 0.737 3.263 13 H -0.217 1.217 14 H -0.218 1.218 15 H -0.207 1.207 16 C -0.193 4.193 17 C -0.027 4.027 18 N -0.320 5.320 19 C 0.348 3.652 20 O -0.412 6.412 21 C -0.154 4.154 22 C -0.070 4.070 23 C -0.156 4.156 24 C -0.077 4.077 25 C 0.270 3.730 26 F -0.172 7.172 27 F -0.174 7.174 28 N -0.165 5.165 29 C -0.006 4.006 30 H 0.089 0.911 31 H 0.072 0.928 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.097 0.903 35 H 0.217 0.783 36 H 0.066 0.934 37 H 0.095 0.905 38 H 0.079 0.921 39 H 0.090 0.910 40 H 0.098 0.902 41 H 0.169 0.831 42 H 0.166 0.834 43 H 0.151 0.849 44 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 0.733 6.813 -21.219 22.298 hybrid contribution -1.115 -1.203 0.730 1.795 sum -0.382 5.610 -20.490 21.247 Atomic orbital electron populations 1.22148 0.94721 1.02879 1.02147 1.21271 0.94265 0.97074 0.83473 0.88413 1.22233 1.01466 0.97290 0.96324 1.20199 0.96806 0.89084 0.87013 0.93026 1.42428 1.38005 1.29434 1.26488 1.19204 1.10333 1.01237 1.06514 0.91192 1.24751 0.98458 0.99453 0.98137 1.69661 1.27558 1.41289 1.19402 0.86215 0.78917 0.83315 0.77867 1.21705 1.21757 1.20740 1.22707 1.01319 1.00612 0.94618 1.22175 1.01105 0.79176 1.00285 1.48200 1.53961 1.09750 1.20133 1.18002 0.78403 0.86786 0.82015 1.90806 1.59407 1.13509 1.77434 1.21162 0.96750 0.99094 0.98383 1.21846 1.00789 0.91781 0.92629 1.21855 0.95372 1.00510 0.97818 1.21656 0.92171 0.96802 0.97087 1.20104 0.97576 0.76102 0.79247 1.93052 1.97553 1.31645 1.94925 1.93036 1.82902 1.92230 1.49212 1.67291 1.37846 1.05903 1.05504 1.22845 0.91724 0.94647 0.91393 0.91060 0.92791 0.91570 0.91748 0.90277 0.78251 0.93437 0.90509 0.92147 0.90953 0.90249 0.83084 0.83361 0.84902 0.80923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.85 9.02 37.15 0.34 -1.51 16 2 C 0.14 1.87 3.19 -67.60 -0.22 1.65 16 3 H 0.10 1.35 7.03 -51.93 -0.37 0.99 16 4 C -0.13 -2.07 5.02 -26.61 -0.13 -2.20 16 5 C 0.18 3.19 2.53 -67.85 -0.17 3.02 16 6 H 0.05 0.93 6.44 -51.93 -0.33 0.59 16 7 N -0.72 -17.03 5.12 -53.35 -0.27 -17.30 16 8 C -0.24 -6.36 9.93 -15.06 -0.15 -6.51 16 9 H 0.07 1.77 7.83 -52.49 -0.41 1.36 16 10 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 11 N -0.93 -27.38 13.06 55.49 0.72 -26.66 16 12 Si 0.91 21.68 29.55 -169.99 -5.02 16.65 16 13 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 14 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 15 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 16 C -0.15 -2.37 5.66 -26.58 -0.15 -2.52 16 17 C 0.10 1.12 5.00 -3.71 -0.02 1.10 16 18 N -0.59 -7.44 2.68 -166.33 -0.45 -7.89 16 19 C 0.56 7.43 7.26 -12.33 -0.09 7.34 16 20 O -0.53 -8.61 16.48 5.32 0.09 -8.52 16 21 C -0.15 -1.65 5.02 -104.82 -0.53 -2.18 16 22 C -0.04 -0.40 7.50 -38.87 -0.29 -0.69 16 23 C -0.14 -1.17 9.60 -39.49 -0.38 -1.55 16 24 C 0.06 0.59 6.28 -82.51 -0.52 0.07 16 25 C 0.32 2.61 5.54 36.01 0.20 2.81 16 26 F -0.19 -1.78 17.25 2.25 0.04 -1.74 16 27 F -0.19 -1.70 17.25 2.25 0.04 -1.67 16 28 N -0.46 -4.92 10.23 -9.14 -0.09 -5.01 16 29 C 0.15 1.67 10.91 -17.13 -0.19 1.48 16 30 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.07 0.78 5.72 -51.93 -0.30 0.48 16 33 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 34 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 35 H 0.38 9.80 7.80 -40.82 -0.32 9.48 16 36 H 0.26 7.31 8.31 -40.82 -0.34 6.98 16 37 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 38 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 39 H 0.07 0.75 7.48 -51.93 -0.39 0.36 16 40 H 0.08 0.82 4.52 -51.93 -0.23 0.58 16 41 H 0.15 1.05 7.11 -52.49 -0.37 0.68 16 42 H 0.15 0.97 8.06 -52.48 -0.42 0.54 16 43 H 0.13 0.77 8.10 -51.93 -0.42 0.35 16 44 H 0.17 1.70 8.06 -52.49 -0.42 1.28 16 LS Contribution 366.22 15.07 5.52 5.52 Total: -1.00 -31.47 366.22 -7.48 -38.95 By element: Atomic # 1 Polarization: 13.42 SS G_CDS: -5.66 Total: 7.76 kcal Atomic # 6 Polarization: 2.29 SS G_CDS: -2.39 Total: -0.10 kcal Atomic # 7 Polarization: -56.77 SS G_CDS: -0.09 Total: -56.86 kcal Atomic # 8 Polarization: -8.61 SS G_CDS: 0.09 Total: -8.52 kcal Atomic # 9 Polarization: -3.48 SS G_CDS: 0.08 Total: -3.40 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -31.47 -7.48 -38.95 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044626298.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.005 kcal (2) G-P(sol) polarization free energy of solvation -31.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds