Wall clock time and date at job start Wed Apr 1 2020 00:32:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08999 * 109.58868 * 2 1 4 4 C 1.53198 * 109.58355 * 120.28227 * 2 1 3 5 5 C 1.53042 * 109.33709 * 65.14006 * 4 2 1 6 6 H 1.08997 * 109.45759 * 301.35625 * 5 4 2 7 7 N 1.46504 * 109.45838 * 181.40095 * 5 4 2 8 8 C 1.36936 * 120.00269 * 154.99932 * 7 5 4 9 9 H 1.07998 * 119.99570 * 359.97438 * 8 7 5 10 10 C 1.38806 * 120.00299 * 180.02562 * 8 7 5 11 11 N 1.31622 * 119.99925 * 359.97438 * 10 8 7 12 12 Si 1.86796 * 120.00135 * 179.97438 * 10 8 7 13 13 H 1.48505 * 109.46917 * 90.00153 * 12 10 8 14 14 H 1.48500 * 109.47437 * 209.99650 * 12 10 8 15 15 H 1.48500 * 109.47415 * 330.00178 * 12 10 8 16 16 C 1.53101 * 109.50494 * 61.34747 * 5 4 2 17 17 C 1.53195 * 109.32873 * 298.65399 * 16 5 4 18 18 N 1.46923 * 109.59040 * 239.57005 * 2 1 3 19 19 C 1.34776 * 120.63094 * 113.84180 * 18 2 1 20 20 O 1.21555 * 119.99909 * 356.21637 * 19 18 2 21 21 C 1.47834 * 120.00062 * 176.21748 * 19 18 2 22 22 C 1.40019 * 120.56278 * 50.32193 * 21 19 18 23 23 C 1.38361 * 118.29045 * 179.73352 * 22 21 19 24 24 C 1.38353 * 119.30229 * 0.56228 * 23 22 21 25 25 C 1.50703 * 119.46072 * 179.72017 * 24 23 22 26 26 F 1.39902 * 109.46924 * 299.97713 * 25 24 23 27 27 F 1.39898 * 109.47000 * 59.97438 * 25 24 23 28 28 N 1.31924 * 121.07536 * 359.69936 * 24 23 22 29 29 C 1.31693 * 121.88601 * 359.97438 * 28 24 23 30 30 H 1.09002 * 109.47466 * 299.71791 * 1 2 3 31 31 H 1.09001 * 109.47148 * 59.71506 * 1 2 3 32 32 H 1.09004 * 109.47120 * 179.71424 * 1 2 3 33 33 H 1.08999 * 109.49657 * 185.10200 * 4 2 1 34 34 H 1.08990 * 109.49888 * 305.16726 * 4 2 1 35 35 H 0.96997 * 119.99895 * 334.99641 * 7 5 4 36 36 H 0.97002 * 120.00027 * 179.97438 * 11 10 8 37 37 H 1.09006 * 109.49038 * 178.69947 * 16 5 4 38 38 H 1.08998 * 109.52109 * 58.62880 * 16 5 4 39 39 H 1.08998 * 109.58713 * 294.84845 * 17 16 5 40 40 H 1.09001 * 109.70054 * 174.49111 * 17 16 5 41 41 H 1.08002 * 120.85275 * 0.02562 * 22 21 19 42 42 H 1.08004 * 120.34844 * 180.25556 * 23 22 21 43 43 H 1.08992 * 109.47191 * 179.97438 * 25 24 23 44 44 H 1.07998 * 119.71539 * 180.02562 * 29 28 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0434 -0.7278 1.2464 5 6 1.6413 -2.2027 1.1737 6 1 0.5564 -2.2802 1.1030 7 7 2.1021 -2.8942 2.3803 8 6 1.4647 -4.0296 2.8044 9 1 0.6221 -4.4150 2.2496 10 6 1.9009 -4.6845 3.9479 11 7 2.9276 -4.2145 4.6243 12 14 1.0310 -6.2329 4.5267 13 1 1.6682 -7.4208 3.9038 14 1 1.1328 -6.3347 6.0047 15 1 -0.3993 -6.1741 4.1319 16 6 2.2800 -2.8465 -0.0598 17 6 1.7691 -2.1427 -1.3210 18 7 2.0226 -0.7011 -1.1935 19 6 2.6944 -0.0345 -2.1531 20 8 2.8383 1.1696 -2.0695 21 6 3.2564 -0.7678 -3.3072 22 6 2.4608 -1.6540 -4.0435 23 6 3.0333 -2.3112 -5.1181 24 6 4.3640 -2.0830 -5.4205 25 6 4.9929 -2.8018 -6.5863 26 9 4.9191 -4.1832 -6.3772 27 9 4.3099 -2.4710 -7.7615 28 7 5.0910 -1.2462 -4.7054 29 6 4.5901 -0.5924 -3.6778 30 1 -0.3634 0.5094 0.8925 31 1 -0.3633 0.5183 -0.8874 32 1 -0.3633 -1.0277 -0.0051 33 1 3.1296 -0.6488 1.2922 34 1 1.6079 -0.2754 2.1372 35 1 2.8587 -2.5478 2.8787 36 1 3.2322 -4.6719 5.4236 37 1 2.0123 -3.9024 -0.0987 38 1 3.3640 -2.7479 -0.0020 39 1 0.6986 -2.3174 -1.4287 40 1 2.2924 -2.5297 -2.1953 41 1 1.4255 -1.8166 -3.7824 42 1 2.4490 -2.9989 -5.7114 43 1 6.0372 -2.5033 -6.6766 44 1 5.2171 0.0847 -3.1168 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044626298.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:32:33 Heat of formation + Delta-G solvation = -101.207653 kcal Electronic energy + Delta-G solvation = -29529.807758 eV Core-core repulsion = 25117.421764 eV Total energy + Delta-G solvation = -4412.385994 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -50.10903 -48.09701 -42.14376 -40.76940 -38.93858 -36.30085 -34.83520 -33.65240 -33.30794 -32.86576 -31.06353 -28.74813 -28.21642 -26.01633 -25.24483 -24.74340 -23.97194 -23.06430 -21.93655 -19.96427 -19.08938 -18.96387 -18.74988 -18.48238 -18.33901 -17.44285 -17.22486 -16.72887 -16.14290 -15.89777 -15.72147 -15.55919 -15.30290 -15.20862 -14.93722 -14.78629 -14.73799 -14.46503 -14.46183 -14.28524 -14.00910 -13.82286 -13.53925 -13.19010 -12.97543 -12.86518 -12.75595 -12.47977 -12.39069 -12.15569 -12.11142 -11.98338 -11.71886 -11.41370 -11.14499 -11.07345 -10.87872 -10.71258 -10.48747 -9.78743 -8.99921 -7.92375 -5.20965 -0.65460 -0.04960 1.38141 1.49268 1.49941 1.58216 1.75729 2.18501 2.36445 2.57524 3.09430 3.18818 3.28592 3.41305 3.56774 3.67093 3.73318 3.80452 3.89618 3.93295 3.97141 4.06093 4.08571 4.22803 4.32666 4.45636 4.52848 4.55054 4.60161 4.64923 4.72581 4.78587 4.81624 5.01199 5.04115 5.05872 5.19792 5.26721 5.32590 5.49678 5.54224 5.59944 6.22338 6.29434 6.46745 6.89551 7.35443 8.11505 8.33622 9.31317 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.012481 B = 0.002845 C = 0.002472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2242.813381 B = 9840.712634 C =11322.295636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.147 3.853 3 H 0.091 0.909 4 C -0.125 4.125 5 C 0.175 3.825 6 H 0.059 0.941 7 N -0.738 5.738 8 C -0.232 4.232 9 H 0.081 0.919 10 C -0.078 4.078 11 N -0.972 5.972 12 Si 0.969 3.031 13 H -0.289 1.289 14 H -0.301 1.301 15 H -0.266 1.266 16 C -0.143 4.143 17 C 0.105 3.895 18 N -0.588 5.588 19 C 0.565 3.435 20 O -0.567 6.567 21 C -0.163 4.163 22 C -0.037 4.037 23 C -0.133 4.133 24 C 0.053 3.947 25 C 0.327 3.673 26 F -0.197 7.197 27 F -0.196 7.196 28 N -0.469 5.469 29 C 0.142 3.858 30 H 0.076 0.924 31 H 0.065 0.935 32 H 0.067 0.933 33 H 0.048 0.952 34 H 0.074 0.926 35 H 0.369 0.631 36 H 0.249 0.751 37 H 0.067 0.933 38 H 0.041 0.959 39 H 0.099 0.901 40 H 0.100 0.900 41 H 0.177 0.823 42 H 0.173 0.827 43 H 0.156 0.844 44 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.811 5.541 -23.349 24.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.044 3.956 3 H 0.110 0.890 4 C -0.164 4.164 5 C 0.067 3.933 6 H 0.077 0.923 7 N -0.377 5.377 8 C -0.364 4.364 9 H 0.099 0.901 10 C -0.270 4.270 11 N -0.623 5.623 12 Si 0.798 3.202 13 H -0.217 1.217 14 H -0.228 1.228 15 H -0.191 1.191 16 C -0.184 4.184 17 C -0.017 4.017 18 N -0.319 5.319 19 C 0.353 3.647 20 O -0.447 6.447 21 C -0.168 4.168 22 C -0.063 4.063 23 C -0.153 4.153 24 C -0.086 4.086 25 C 0.273 3.727 26 F -0.178 7.178 27 F -0.177 7.177 28 N -0.178 5.178 29 C -0.016 4.016 30 H 0.095 0.905 31 H 0.084 0.916 32 H 0.086 0.914 33 H 0.067 0.933 34 H 0.093 0.907 35 H 0.200 0.800 36 H 0.057 0.943 37 H 0.086 0.914 38 H 0.059 0.941 39 H 0.117 0.883 40 H 0.118 0.882 41 H 0.194 0.806 42 H 0.191 0.809 43 H 0.173 0.827 44 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -1.042 6.121 -23.528 24.334 hybrid contribution -0.556 -0.938 1.342 1.729 sum -1.598 5.183 -22.186 22.840 Atomic orbital electron populations 1.22096 0.92834 1.03213 1.03078 1.21164 0.95601 0.96302 0.82526 0.89046 1.22098 1.00490 0.96086 0.97686 1.20446 0.97124 0.89965 0.85763 0.92341 1.42678 1.37512 1.29283 1.28252 1.19623 1.09732 1.01276 1.05755 0.90103 1.25533 0.99708 1.02758 0.99029 1.69824 1.29649 1.42898 1.19975 0.85202 0.78611 0.79802 0.76543 1.21683 1.22804 1.19058 1.22488 0.99999 1.00331 0.95538 1.22193 1.02791 0.78060 0.98699 1.48217 1.53776 1.10044 1.19818 1.18257 0.77620 0.86422 0.82387 1.90788 1.60488 1.15094 1.78355 1.21024 0.97125 1.00295 0.98372 1.22120 1.01610 0.90541 0.92011 1.22168 0.95108 1.00359 0.97635 1.22027 0.92866 0.96468 0.97246 1.20247 0.98479 0.75488 0.78500 1.93040 1.97616 1.32240 1.94943 1.93029 1.83130 1.92225 1.49358 1.67298 1.38305 1.06455 1.05694 1.22919 0.92034 0.94975 0.91719 0.90502 0.91589 0.91408 0.93319 0.90722 0.79957 0.94256 0.91403 0.94060 0.88275 0.88190 0.80568 0.80906 0.82736 0.80927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.17 9.02 71.98 0.65 -2.52 16 2 C 0.15 3.69 3.19 44.98 0.14 3.83 16 3 H 0.09 2.47 7.03 -2.39 -0.02 2.45 16 4 C -0.12 -3.82 5.02 30.67 0.15 -3.67 16 5 C 0.18 6.10 2.53 45.04 0.11 6.22 16 6 H 0.06 1.98 6.44 -2.39 -0.02 1.97 16 7 N -0.74 -35.04 5.12 -322.72 -1.65 -36.69 16 8 C -0.23 -12.12 9.93 84.03 0.83 -11.29 16 9 H 0.08 3.97 7.83 -2.91 -0.02 3.95 16 10 C -0.08 -4.35 5.50 84.86 0.47 -3.88 16 11 N -0.97 -58.57 13.06 21.65 0.28 -58.29 16 12 Si 0.97 44.68 29.55 68.60 2.03 46.70 16 13 H -0.29 -13.20 7.11 99.48 0.71 -12.49 16 14 H -0.30 -14.24 7.11 99.48 0.71 -13.53 16 15 H -0.27 -11.41 7.11 99.48 0.71 -10.71 16 16 C -0.14 -4.30 5.66 30.69 0.17 -4.12 16 17 C 0.10 2.17 5.00 86.36 0.43 2.60 16 18 N -0.59 -13.79 2.68 -798.43 -2.14 -15.93 16 19 C 0.57 14.22 7.26 86.78 0.63 14.85 16 20 O -0.57 -18.02 16.48 -3.89 -0.06 -18.09 16 21 C -0.16 -3.35 5.02 -20.00 -0.10 -3.45 16 22 C -0.04 -0.55 7.50 22.73 0.17 -0.37 16 23 C -0.13 -1.88 9.60 22.33 0.21 -1.66 16 24 C 0.05 0.90 6.28 42.57 0.27 1.17 16 25 C 0.33 4.56 5.54 71.24 0.39 4.95 16 26 F -0.20 -3.25 17.25 44.97 0.78 -2.48 16 27 F -0.20 -3.04 17.25 44.97 0.78 -2.27 16 28 N -0.47 -9.50 10.23 -182.82 -1.87 -11.37 16 29 C 0.14 3.00 10.91 85.02 0.93 3.92 16 30 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 31 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.07 1.37 5.72 -2.38 -0.01 1.36 16 33 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 34 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 35 H 0.37 19.43 7.80 -92.71 -0.72 18.71 16 36 H 0.25 14.65 8.31 -92.71 -0.77 13.88 16 37 H 0.07 2.18 8.14 -2.38 -0.02 2.16 16 38 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 39 H 0.10 1.62 7.48 -2.39 -0.02 1.60 16 40 H 0.10 1.72 4.52 -2.39 -0.01 1.71 16 41 H 0.18 1.66 7.11 -2.91 -0.02 1.64 16 42 H 0.17 1.57 8.06 -2.91 -0.02 1.54 16 43 H 0.16 1.47 8.10 -2.39 -0.02 1.45 16 44 H 0.17 3.45 8.06 -2.91 -0.02 3.43 16 Total: -1.00 -68.64 366.22 3.93 -64.71 By element: Atomic # 1 Polarization: 26.79 SS G_CDS: 0.33 Total: 27.12 kcal Atomic # 6 Polarization: 1.11 SS G_CDS: 5.47 Total: 6.58 kcal Atomic # 7 Polarization: -116.89 SS G_CDS: -5.38 Total: -122.27 kcal Atomic # 8 Polarization: -18.02 SS G_CDS: -0.06 Total: -18.09 kcal Atomic # 9 Polarization: -6.30 SS G_CDS: 1.55 Total: -4.75 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 2.03 Total: 46.70 kcal Total: -68.64 3.93 -64.71 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044626298.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.502 kcal (2) G-P(sol) polarization free energy of solvation -68.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds