Wall clock time and date at job start Wed Apr 1 2020 00:32:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08996 * 109.58916 * 2 1 4 4 C 1.53194 * 109.58612 * 120.28364 * 2 1 3 5 5 C 1.53041 * 109.31429 * 174.56399 * 4 2 1 6 6 H 1.09002 * 109.45860 * 58.63821 * 5 4 2 7 7 N 1.46496 * 109.46158 * 178.61629 * 5 4 2 8 8 C 1.36944 * 119.99895 * 205.03149 * 7 5 4 9 9 H 1.07995 * 119.99704 * 359.71923 * 8 7 5 10 10 C 1.38810 * 119.99714 * 179.97438 * 8 7 5 11 11 N 1.31618 * 120.00250 * 359.97438 * 10 8 7 12 12 Si 1.86803 * 119.99856 * 179.97438 * 10 8 7 13 13 H 1.48501 * 109.46757 * 359.97438 * 12 10 8 14 14 H 1.48499 * 109.47149 * 119.99711 * 12 10 8 15 15 H 1.48502 * 109.47063 * 240.00068 * 12 10 8 16 16 C 1.53039 * 109.52476 * 298.62925 * 5 4 2 17 17 C 1.53190 * 109.31619 * 61.38703 * 16 5 4 18 18 N 1.46929 * 109.70420 * 239.64497 * 2 1 3 19 19 C 1.34780 * 120.63145 * 6.55349 * 18 2 1 20 20 O 1.21554 * 119.99986 * 6.27867 * 19 18 2 21 21 C 1.47842 * 120.00113 * 186.27933 * 19 18 2 22 22 C 1.40012 * 120.55766 * 212.98798 * 21 19 18 23 23 C 1.38359 * 118.28750 * 179.73175 * 22 21 19 24 24 C 1.38353 * 119.30249 * 0.54367 * 23 22 21 25 25 C 1.50704 * 119.46024 * 179.69685 * 24 23 22 26 26 F 1.39900 * 109.46695 * 210.01691 * 25 24 23 27 27 F 1.39890 * 109.47165 * 330.01762 * 25 24 23 28 28 N 1.31923 * 121.07936 * 359.71519 * 24 23 22 29 29 C 1.31698 * 121.87955 * 0.02562 * 28 24 23 30 30 H 1.08998 * 109.47263 * 292.55349 * 1 2 3 31 31 H 1.09005 * 109.47022 * 52.55942 * 1 2 3 32 32 H 1.09007 * 109.47355 * 172.55203 * 1 2 3 33 33 H 1.09003 * 109.50016 * 54.61305 * 4 2 1 34 34 H 1.08994 * 109.49640 * 294.51554 * 4 2 1 35 35 H 0.96999 * 119.99979 * 25.02037 * 7 5 4 36 36 H 0.97002 * 119.99986 * 180.02562 * 11 10 8 37 37 H 1.09007 * 109.49590 * 181.32056 * 16 5 4 38 38 H 1.08999 * 109.50264 * 301.41576 * 16 5 4 39 39 H 1.08995 * 109.58717 * 185.56085 * 17 16 5 40 40 H 1.09002 * 109.71886 * 65.19465 * 17 16 5 41 41 H 1.08000 * 120.85831 * 359.97272 * 22 21 19 42 42 H 1.08005 * 120.35302 * 180.27595 * 23 22 21 43 43 H 1.09006 * 109.46637 * 90.01999 * 25 24 23 44 44 H 1.08003 * 119.71831 * 179.97438 * 29 28 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0435 -0.7278 1.2463 5 6 3.5678 -0.8434 1.1730 6 1 4.0045 0.1528 1.1019 7 7 4.0654 -1.5097 2.3790 8 6 5.3488 -1.2894 2.8029 9 1 5.9955 -0.6281 2.2455 10 6 5.8201 -1.9203 3.9460 11 7 5.0333 -2.7299 4.6227 12 14 7.5710 -1.6204 4.5238 13 1 8.2438 -0.6769 3.5952 14 1 7.5487 -1.0396 5.8903 15 1 8.3125 -2.9069 4.5447 16 6 3.9600 -1.6610 -0.0598 17 6 3.4685 -0.9437 -1.3210 18 7 2.0253 -0.6990 -1.1936 19 6 1.1722 -1.1079 -2.1536 20 8 -0.0024 -0.8006 -2.0939 21 6 1.6649 -1.9299 -3.2793 22 6 1.0935 -1.8100 -4.5518 23 6 1.5948 -2.5982 -5.5726 24 6 2.6269 -3.4792 -5.3032 25 6 3.1710 -4.3443 -6.4108 26 9 3.6456 -5.5458 -5.8737 27 9 2.1546 -4.6151 -7.3331 28 7 3.1424 -3.5747 -4.0926 29 6 2.7030 -2.8427 -3.0899 30 1 -0.3634 0.3941 0.9490 31 1 -0.3633 0.6248 -0.8160 32 1 -0.3634 -1.0190 -0.1332 33 1 1.6049 -1.7247 1.2922 34 1 1.7638 -0.1655 2.1371 35 1 3.4857 -2.1067 2.8774 36 1 5.3626 -3.1705 5.4217 37 1 5.0446 -1.7630 -0.0988 38 1 3.5032 -2.6490 -0.0017 39 1 3.6576 -1.5684 -2.1939 40 1 3.9917 0.0062 -1.4313 41 1 0.2850 -1.1173 -4.7330 42 1 1.1818 -2.5295 -6.5682 43 1 3.9868 -3.8229 -6.9117 44 1 3.1503 -2.9496 -2.1127 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044626303.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:32:41 Heat of formation + Delta-G solvation = -55.755734 kcal Electronic energy + Delta-G solvation = -29628.265540 eV Core-core repulsion = 25217.850488 eV Total energy + Delta-G solvation = -4410.415051 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -49.37713 -47.37397 -41.36827 -39.82133 -37.55934 -34.70071 -33.87350 -32.94604 -32.02286 -31.74143 -29.43157 -27.60993 -27.09908 -24.61758 -24.22453 -23.46490 -22.90726 -21.76588 -20.41200 -19.42598 -18.28895 -17.96346 -17.85856 -17.27863 -17.13882 -16.63496 -16.13530 -15.58183 -14.95048 -14.79452 -14.77086 -14.37579 -14.19607 -13.95614 -13.81102 -13.74028 -13.56213 -13.49934 -13.32096 -13.20490 -12.75086 -12.65139 -12.16204 -12.09714 -11.75466 -11.64903 -11.44193 -10.96813 -10.89730 -10.89152 -10.55736 -10.38233 -10.26939 -10.16891 -9.92452 -9.77555 -9.58867 -9.18530 -8.96490 -8.58563 -7.04244 -5.82736 -3.12547 0.09760 0.71934 2.46343 2.78470 2.92496 3.28248 3.39306 3.44822 3.47329 3.66015 3.85077 4.18169 4.30449 4.39233 4.45559 4.52310 4.70183 4.76542 4.87925 5.05463 5.10369 5.14800 5.22892 5.38551 5.43251 5.47656 5.54071 5.56888 5.72114 5.79899 5.90756 5.97626 6.04382 6.17204 6.24238 6.33090 6.37203 6.44629 6.62649 6.79096 6.93861 7.26818 7.32204 7.64000 7.99937 8.35133 9.46778 10.03108 10.37610 11.39643 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.012276 B = 0.002916 C = 0.002441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2280.269142 B = 9598.957209 C =11467.761600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.148 3.852 3 H 0.074 0.926 4 C -0.136 4.136 5 C 0.180 3.820 6 H 0.049 0.951 7 N -0.723 5.723 8 C -0.242 4.242 9 H 0.071 0.929 10 C -0.012 4.012 11 N -0.931 5.931 12 Si 0.906 3.094 13 H -0.280 1.280 14 H -0.292 1.292 15 H -0.291 1.291 16 C -0.154 4.154 17 C 0.080 3.920 18 N -0.592 5.592 19 C 0.561 3.439 20 O -0.527 6.527 21 C -0.164 4.164 22 C -0.021 4.021 23 C -0.148 4.148 24 C 0.063 3.937 25 C 0.327 3.673 26 F -0.184 7.184 27 F -0.194 7.194 28 N -0.455 5.455 29 C 0.129 3.871 30 H 0.048 0.952 31 H 0.072 0.928 32 H 0.064 0.936 33 H 0.065 0.935 34 H 0.078 0.922 35 H 0.384 0.616 36 H 0.255 0.745 37 H 0.080 0.920 38 H 0.062 0.938 39 H 0.092 0.908 40 H 0.073 0.927 41 H 0.152 0.848 42 H 0.151 0.849 43 H 0.132 0.868 44 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.972 2.959 -22.740 23.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.046 3.954 3 H 0.092 0.908 4 C -0.175 4.175 5 C 0.070 3.930 6 H 0.067 0.933 7 N -0.363 5.363 8 C -0.373 4.373 9 H 0.089 0.911 10 C -0.208 4.208 11 N -0.579 5.579 12 Si 0.737 3.263 13 H -0.205 1.205 14 H -0.219 1.219 15 H -0.218 1.218 16 C -0.196 4.196 17 C -0.043 4.043 18 N -0.324 5.324 19 C 0.348 3.652 20 O -0.406 6.406 21 C -0.169 4.169 22 C -0.047 4.047 23 C -0.168 4.168 24 C -0.076 4.076 25 C 0.273 3.727 26 F -0.165 7.165 27 F -0.175 7.175 28 N -0.163 5.163 29 C -0.029 4.029 30 H 0.067 0.933 31 H 0.091 0.909 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.097 0.903 35 H 0.218 0.782 36 H 0.065 0.935 37 H 0.099 0.901 38 H 0.080 0.920 39 H 0.109 0.891 40 H 0.091 0.909 41 H 0.170 0.830 42 H 0.169 0.831 43 H 0.149 0.851 44 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -6.731 2.560 -22.493 23.618 hybrid contribution 0.252 0.263 0.452 0.581 sum -6.479 2.823 -22.041 23.146 Atomic orbital electron populations 1.22185 0.92767 1.03629 1.00877 1.21368 0.95445 0.95270 0.83360 0.90769 1.22322 0.97626 1.01092 0.96453 1.20139 0.90851 0.95029 0.87021 0.93296 1.42431 1.13102 1.54276 1.26502 1.19260 0.89096 1.22463 1.06458 0.91089 1.24755 0.98172 0.99705 0.98167 1.69670 1.35375 1.33431 1.19383 0.86143 0.84453 0.77328 0.78391 1.20535 1.21865 1.21839 1.22747 1.02161 1.00018 0.94628 1.22550 0.79399 1.01746 1.00556 1.48135 1.07561 1.56790 1.19957 1.17985 0.85805 0.79739 0.81695 1.90842 1.16668 1.56754 1.76307 1.21309 0.99107 1.00535 0.95974 1.21673 0.96595 0.96014 0.90434 1.21822 0.96900 0.96570 1.01476 1.21887 0.95270 0.96770 0.93683 1.20089 0.86962 0.81808 0.83883 1.93060 1.88414 1.48046 1.86934 1.93019 1.62991 1.94579 1.66952 1.67408 1.28014 1.21986 0.98901 1.23592 0.91209 0.89445 0.98623 0.93341 0.90913 0.91670 0.91651 0.90311 0.78205 0.93487 0.90132 0.91959 0.89061 0.90919 0.83003 0.83138 0.85073 0.79769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.82 7.62 37.16 0.28 -1.54 16 2 C 0.15 1.97 3.49 -67.60 -0.24 1.74 16 3 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 4 C -0.14 -2.10 4.84 -26.61 -0.13 -2.23 16 5 C 0.18 3.22 2.73 -67.89 -0.19 3.04 16 6 H 0.05 0.89 8.08 -51.93 -0.42 0.47 16 7 N -0.72 -17.02 5.12 -53.39 -0.27 -17.30 16 8 C -0.24 -6.37 9.93 -15.06 -0.15 -6.52 16 9 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 10 C -0.01 -0.33 5.50 -17.43 -0.10 -0.42 16 11 N -0.93 -27.42 13.06 55.49 0.72 -26.70 16 12 Si 0.91 21.76 29.55 -169.99 -5.02 16.73 16 13 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 14 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 15 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 16 C -0.15 -2.36 5.32 -26.61 -0.14 -2.51 16 17 C 0.08 0.96 5.54 -3.71 -0.02 0.94 16 18 N -0.59 -7.56 2.97 -166.33 -0.49 -8.06 16 19 C 0.56 7.34 7.22 -12.33 -0.09 7.26 16 20 O -0.53 -7.94 12.44 5.32 0.07 -7.88 16 21 C -0.16 -1.85 5.46 -104.82 -0.57 -2.42 16 22 C -0.02 -0.19 9.75 -38.87 -0.38 -0.57 16 23 C -0.15 -1.19 9.42 -39.49 -0.37 -1.56 16 24 C 0.06 0.60 6.58 -82.51 -0.54 0.06 16 25 C 0.33 2.57 5.72 36.01 0.21 2.78 16 26 F -0.18 -2.00 17.05 2.25 0.04 -1.96 16 27 F -0.19 -1.60 16.45 2.25 0.04 -1.56 16 28 N -0.45 -5.34 9.94 -9.13 -0.09 -5.43 16 29 C 0.13 1.48 8.60 -17.13 -0.15 1.33 16 30 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.07 1.00 6.68 -51.93 -0.35 0.65 16 32 H 0.06 0.96 6.83 -51.93 -0.35 0.61 16 33 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 34 H 0.08 1.25 8.14 -51.93 -0.42 0.82 16 35 H 0.38 9.80 7.80 -40.82 -0.32 9.48 16 36 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 37 H 0.08 1.32 8.14 -51.92 -0.42 0.90 16 38 H 0.06 1.00 7.64 -51.93 -0.40 0.60 16 39 H 0.09 0.97 3.52 -51.93 -0.18 0.78 16 40 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 41 H 0.15 1.20 8.03 -52.49 -0.42 0.77 16 42 H 0.15 0.81 7.59 -52.48 -0.40 0.41 16 43 H 0.13 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.19 2.10 5.01 -52.48 -0.26 1.84 16 LS Contribution 359.91 15.07 5.42 5.42 Total: -1.00 -31.51 359.91 -7.77 -39.28 By element: Atomic # 1 Polarization: 13.69 SS G_CDS: -5.61 Total: 8.08 kcal Atomic # 6 Polarization: 1.93 SS G_CDS: -2.57 Total: -0.64 kcal Atomic # 7 Polarization: -57.35 SS G_CDS: -0.13 Total: -57.49 kcal Atomic # 8 Polarization: -7.94 SS G_CDS: 0.07 Total: -7.88 kcal Atomic # 9 Polarization: -3.59 SS G_CDS: 0.08 Total: -3.52 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -31.51 -7.77 -39.28 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044626303.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.475 kcal (2) G-P(sol) polarization free energy of solvation -31.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.280 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds