Wall clock time and date at job start Wed Apr 1 2020 00:32:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08996 * 109.58916 * 2 1 4 4 C 1.53194 * 109.58612 * 120.28364 * 2 1 3 5 5 C 1.53041 * 109.31429 * 174.56399 * 4 2 1 6 6 H 1.09002 * 109.45860 * 58.63821 * 5 4 2 7 7 N 1.46496 * 109.46158 * 178.61629 * 5 4 2 8 8 C 1.36944 * 119.99895 * 205.03149 * 7 5 4 9 9 H 1.07995 * 119.99704 * 359.71923 * 8 7 5 10 10 C 1.38810 * 119.99714 * 179.97438 * 8 7 5 11 11 N 1.31618 * 120.00250 * 359.97438 * 10 8 7 12 12 Si 1.86803 * 119.99856 * 179.97438 * 10 8 7 13 13 H 1.48501 * 109.46757 * 359.97438 * 12 10 8 14 14 H 1.48499 * 109.47149 * 119.99711 * 12 10 8 15 15 H 1.48502 * 109.47063 * 240.00068 * 12 10 8 16 16 C 1.53039 * 109.52476 * 298.62925 * 5 4 2 17 17 C 1.53190 * 109.31619 * 61.38703 * 16 5 4 18 18 N 1.46929 * 109.70420 * 239.64497 * 2 1 3 19 19 C 1.34780 * 120.63145 * 6.55349 * 18 2 1 20 20 O 1.21554 * 119.99986 * 6.27867 * 19 18 2 21 21 C 1.47842 * 120.00113 * 186.27933 * 19 18 2 22 22 C 1.40012 * 120.55766 * 212.98798 * 21 19 18 23 23 C 1.38359 * 118.28750 * 179.73175 * 22 21 19 24 24 C 1.38353 * 119.30249 * 0.54367 * 23 22 21 25 25 C 1.50704 * 119.46024 * 179.69685 * 24 23 22 26 26 F 1.39900 * 109.46695 * 210.01691 * 25 24 23 27 27 F 1.39890 * 109.47165 * 330.01762 * 25 24 23 28 28 N 1.31923 * 121.07936 * 359.71519 * 24 23 22 29 29 C 1.31698 * 121.87955 * 0.02562 * 28 24 23 30 30 H 1.08998 * 109.47263 * 292.55349 * 1 2 3 31 31 H 1.09005 * 109.47022 * 52.55942 * 1 2 3 32 32 H 1.09007 * 109.47355 * 172.55203 * 1 2 3 33 33 H 1.09003 * 109.50016 * 54.61305 * 4 2 1 34 34 H 1.08994 * 109.49640 * 294.51554 * 4 2 1 35 35 H 0.96999 * 119.99979 * 25.02037 * 7 5 4 36 36 H 0.97002 * 119.99986 * 180.02562 * 11 10 8 37 37 H 1.09007 * 109.49590 * 181.32056 * 16 5 4 38 38 H 1.08999 * 109.50264 * 301.41576 * 16 5 4 39 39 H 1.08995 * 109.58717 * 185.56085 * 17 16 5 40 40 H 1.09002 * 109.71886 * 65.19465 * 17 16 5 41 41 H 1.08000 * 120.85831 * 359.97272 * 22 21 19 42 42 H 1.08005 * 120.35302 * 180.27595 * 23 22 21 43 43 H 1.09006 * 109.46637 * 90.01999 * 25 24 23 44 44 H 1.08003 * 119.71831 * 179.97438 * 29 28 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0435 -0.7278 1.2463 5 6 3.5678 -0.8434 1.1730 6 1 4.0045 0.1528 1.1019 7 7 4.0654 -1.5097 2.3790 8 6 5.3488 -1.2894 2.8029 9 1 5.9955 -0.6281 2.2455 10 6 5.8201 -1.9203 3.9460 11 7 5.0333 -2.7299 4.6227 12 14 7.5710 -1.6204 4.5238 13 1 8.2438 -0.6769 3.5952 14 1 7.5487 -1.0396 5.8903 15 1 8.3125 -2.9069 4.5447 16 6 3.9600 -1.6610 -0.0598 17 6 3.4685 -0.9437 -1.3210 18 7 2.0253 -0.6990 -1.1936 19 6 1.1722 -1.1079 -2.1536 20 8 -0.0024 -0.8006 -2.0939 21 6 1.6649 -1.9299 -3.2793 22 6 1.0935 -1.8100 -4.5518 23 6 1.5948 -2.5982 -5.5726 24 6 2.6269 -3.4792 -5.3032 25 6 3.1710 -4.3443 -6.4108 26 9 3.6456 -5.5458 -5.8737 27 9 2.1546 -4.6151 -7.3331 28 7 3.1424 -3.5747 -4.0926 29 6 2.7030 -2.8427 -3.0899 30 1 -0.3634 0.3941 0.9490 31 1 -0.3633 0.6248 -0.8160 32 1 -0.3634 -1.0190 -0.1332 33 1 1.6049 -1.7247 1.2922 34 1 1.7638 -0.1655 2.1371 35 1 3.4857 -2.1067 2.8774 36 1 5.3626 -3.1705 5.4217 37 1 5.0446 -1.7630 -0.0988 38 1 3.5032 -2.6490 -0.0017 39 1 3.6576 -1.5684 -2.1939 40 1 3.9917 0.0062 -1.4313 41 1 0.2850 -1.1173 -4.7330 42 1 1.1818 -2.5295 -6.5682 43 1 3.9868 -3.8229 -6.9117 44 1 3.1503 -2.9496 -2.1127 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044626303.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:32:40 Heat of formation + Delta-G solvation = -75.239476 kcal Electronic energy + Delta-G solvation = -29629.110418 eV Core-core repulsion = 25217.850488 eV Total energy + Delta-G solvation = -4411.259930 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -50.02711 -48.04965 -42.29668 -40.75888 -38.80475 -36.26407 -34.88662 -33.80904 -33.66404 -32.65985 -31.05591 -28.66295 -28.07899 -26.07462 -25.27251 -24.52002 -24.08554 -22.79599 -21.71782 -20.56989 -19.15770 -18.98729 -18.66218 -18.51130 -18.15779 -17.48238 -17.15388 -16.76863 -16.29998 -15.97480 -15.78977 -15.46241 -15.27416 -15.20075 -14.89234 -14.81697 -14.61190 -14.46309 -14.29580 -14.08221 -13.99079 -13.63385 -13.39821 -13.25765 -13.06980 -12.88602 -12.66232 -12.62215 -12.34183 -12.11127 -12.04383 -11.96963 -11.71380 -11.38648 -11.16438 -10.95365 -10.92083 -10.41129 -10.19039 -9.67746 -9.00274 -7.92480 -5.21078 -0.69036 -0.02100 1.49142 1.49485 1.51915 1.59126 1.78976 2.22773 2.49922 2.57398 3.07859 3.17849 3.26991 3.41144 3.57773 3.67001 3.72545 3.80933 3.86142 3.98012 4.00645 4.04962 4.12861 4.22409 4.30610 4.43028 4.53092 4.58869 4.67433 4.69600 4.73957 4.80748 4.85658 4.98581 5.05361 5.13678 5.23826 5.25368 5.40108 5.48441 5.54965 5.64492 6.27553 6.29790 6.50147 6.97263 7.35675 8.11197 8.33593 9.31237 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.012276 B = 0.002916 C = 0.002441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2280.269142 B = 9598.957209 C =11467.761600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.153 3.847 3 H 0.091 0.909 4 C -0.125 4.125 5 C 0.174 3.826 6 H 0.051 0.949 7 N -0.737 5.737 8 C -0.232 4.232 9 H 0.080 0.920 10 C -0.078 4.078 11 N -0.971 5.971 12 Si 0.968 3.032 13 H -0.263 1.263 14 H -0.297 1.297 15 H -0.297 1.297 16 C -0.143 4.143 17 C 0.092 3.908 18 N -0.594 5.594 19 C 0.562 3.438 20 O -0.549 6.549 21 C -0.176 4.176 22 C -0.017 4.017 23 C -0.133 4.133 24 C 0.055 3.945 25 C 0.325 3.675 26 F -0.204 7.204 27 F -0.195 7.195 28 N -0.479 5.479 29 C 0.122 3.878 30 H 0.058 0.942 31 H 0.071 0.929 32 H 0.046 0.954 33 H 0.051 0.949 34 H 0.074 0.926 35 H 0.370 0.630 36 H 0.249 0.751 37 H 0.070 0.930 38 H 0.050 0.950 39 H 0.110 0.890 40 H 0.090 0.910 41 H 0.168 0.832 42 H 0.183 0.817 43 H 0.175 0.825 44 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.733 4.238 -25.566 26.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.050 3.950 3 H 0.108 0.892 4 C -0.164 4.164 5 C 0.066 3.934 6 H 0.069 0.931 7 N -0.376 5.376 8 C -0.364 4.364 9 H 0.098 0.902 10 C -0.270 4.270 11 N -0.622 5.622 12 Si 0.798 3.202 13 H -0.187 1.187 14 H -0.225 1.225 15 H -0.225 1.225 16 C -0.184 4.184 17 C -0.031 4.031 18 N -0.325 5.325 19 C 0.350 3.650 20 O -0.429 6.429 21 C -0.181 4.181 22 C -0.044 4.044 23 C -0.153 4.153 24 C -0.083 4.083 25 C 0.271 3.729 26 F -0.185 7.185 27 F -0.176 7.176 28 N -0.187 5.187 29 C -0.036 4.036 30 H 0.077 0.923 31 H 0.090 0.910 32 H 0.065 0.935 33 H 0.070 0.930 34 H 0.092 0.908 35 H 0.202 0.798 36 H 0.058 0.942 37 H 0.088 0.912 38 H 0.069 0.931 39 H 0.127 0.873 40 H 0.108 0.892 41 H 0.185 0.815 42 H 0.201 0.799 43 H 0.192 0.808 44 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -6.489 3.871 -25.382 26.482 hybrid contribution 0.092 -0.133 1.211 1.221 sum -6.396 3.738 -24.171 25.281 Atomic orbital electron populations 1.22054 0.92482 1.02475 1.01386 1.21306 0.95539 0.95659 0.82480 0.89153 1.22173 0.95807 1.00669 0.97723 1.20392 0.92261 0.94808 0.85927 0.93072 1.42659 1.12256 1.54464 1.28233 1.19658 0.90094 1.20923 1.05708 0.90192 1.25527 1.01867 1.00536 0.99040 1.69826 1.37121 1.35323 1.19976 0.85138 0.80328 0.77008 0.77702 1.18678 1.22477 1.22481 1.22497 1.01436 0.99374 0.95112 1.22482 0.78926 1.02458 0.99203 1.48145 1.07861 1.56725 1.19816 1.18224 0.85422 0.79370 0.81960 1.90831 1.17477 1.57630 1.76952 1.21176 0.99826 1.00850 0.96222 1.21924 0.96530 0.96119 0.89787 1.22129 0.95613 0.94989 1.02525 1.22306 0.95461 0.97166 0.93402 1.20535 0.87900 0.80925 0.83530 1.93018 1.88672 1.49469 1.87365 1.93016 1.63312 1.94562 1.66756 1.67388 1.28994 1.22559 0.99809 1.23437 0.91655 0.89979 0.98532 0.92296 0.90994 0.93498 0.92980 0.90774 0.79812 0.94239 0.91150 0.93129 0.87257 0.89199 0.81491 0.79939 0.80787 0.80528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.24 7.62 71.98 0.55 -2.70 16 2 C 0.15 3.89 3.49 44.97 0.16 4.05 16 3 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 4 C -0.12 -3.85 4.84 30.67 0.15 -3.71 16 5 C 0.17 6.21 2.73 45.02 0.12 6.33 16 6 H 0.05 1.81 8.08 -2.39 -0.02 1.79 16 7 N -0.74 -35.26 5.12 -322.82 -1.65 -36.92 16 8 C -0.23 -12.26 9.93 84.03 0.83 -11.42 16 9 H 0.08 4.01 7.83 -2.91 -0.02 3.98 16 10 C -0.08 -4.35 5.50 84.86 0.47 -3.89 16 11 N -0.97 -58.80 13.06 21.65 0.28 -58.51 16 12 Si 0.97 45.15 29.55 68.60 2.03 47.18 16 13 H -0.26 -11.32 7.11 99.48 0.71 -10.61 16 14 H -0.30 -14.01 7.11 99.48 0.71 -13.30 16 15 H -0.30 -14.02 7.11 99.48 0.71 -13.32 16 16 C -0.14 -4.34 5.32 30.67 0.16 -4.18 16 17 C 0.09 2.05 5.54 86.36 0.48 2.52 16 18 N -0.59 -14.41 2.97 -798.41 -2.37 -16.78 16 19 C 0.56 14.03 7.22 86.78 0.63 14.65 16 20 O -0.55 -15.95 12.44 -3.88 -0.05 -16.00 16 21 C -0.18 -3.68 5.46 -20.00 -0.11 -3.79 16 22 C -0.02 -0.28 9.75 22.73 0.22 -0.05 16 23 C -0.13 -1.71 9.42 22.33 0.21 -1.50 16 24 C 0.06 0.92 6.58 42.57 0.28 1.20 16 25 C 0.33 4.23 5.72 71.24 0.41 4.64 16 26 F -0.20 -4.15 17.05 44.97 0.77 -3.38 16 27 F -0.20 -2.65 16.45 44.97 0.74 -1.91 16 28 N -0.48 -10.60 9.94 -182.81 -1.82 -12.41 16 29 C 0.12 2.67 8.60 85.02 0.73 3.40 16 30 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.07 1.88 6.68 -2.38 -0.02 1.86 16 32 H 0.05 1.37 6.83 -2.38 -0.02 1.35 16 33 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 34 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 35 H 0.37 19.54 7.80 -92.71 -0.72 18.82 16 36 H 0.25 14.69 8.31 -92.71 -0.77 13.92 16 37 H 0.07 2.28 8.14 -2.38 -0.02 2.26 16 38 H 0.05 1.65 7.64 -2.39 -0.02 1.63 16 39 H 0.11 2.16 3.52 -2.39 -0.01 2.15 16 40 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 41 H 0.17 2.13 8.03 -2.91 -0.02 2.11 16 42 H 0.18 1.15 7.59 -2.91 -0.02 1.12 16 43 H 0.18 0.78 8.14 -2.38 -0.02 0.76 16 44 H 0.18 3.99 5.01 -2.91 -0.01 3.98 16 Total: -1.00 -69.04 359.91 3.54 -65.50 By element: Atomic # 1 Polarization: 27.35 SS G_CDS: 0.33 Total: 27.68 kcal Atomic # 6 Polarization: 0.28 SS G_CDS: 5.29 Total: 5.57 kcal Atomic # 7 Polarization: -119.07 SS G_CDS: -5.56 Total: -124.63 kcal Atomic # 8 Polarization: -15.95 SS G_CDS: -0.05 Total: -16.00 kcal Atomic # 9 Polarization: -6.80 SS G_CDS: 1.51 Total: -5.29 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 2.03 Total: 47.18 kcal Total: -69.04 3.54 -65.50 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044626303.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.742 kcal (2) G-P(sol) polarization free energy of solvation -69.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds