Wall clock time and date at job start Wed Apr 1 2020 00:32:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09000 * 109.58319 * 2 1 4 4 C 1.53156 * 109.59320 * 239.55983 * 2 1 3 5 5 C 1.53043 * 109.33248 * 185.56825 * 4 2 1 6 6 H 1.08993 * 109.46290 * 181.39017 * 5 4 2 7 7 N 1.46507 * 109.45849 * 301.36365 * 5 4 2 8 8 C 1.36932 * 119.99506 * 205.02305 * 7 5 4 9 9 H 1.07997 * 120.00784 * 359.97438 * 8 7 5 10 10 C 1.38811 * 119.99528 * 180.02562 * 8 7 5 11 11 N 1.31618 * 120.00621 * 359.97438 * 10 8 7 12 12 Si 1.86807 * 119.99775 * 180.02562 * 10 8 7 13 13 H 1.48496 * 109.47402 * 89.99873 * 12 10 8 14 14 H 1.48499 * 109.46981 * 329.99592 * 12 10 8 15 15 H 1.48510 * 109.46828 * 209.99830 * 12 10 8 16 16 C 1.53048 * 109.52202 * 61.37372 * 5 4 2 17 17 C 1.53197 * 109.31291 * 298.64200 * 16 5 4 18 18 N 1.46923 * 108.77401 * 54.63702 * 17 16 5 19 19 C 1.34778 * 120.62923 * 126.36827 * 18 17 16 20 20 O 1.21555 * 119.99670 * 177.77507 * 19 18 17 21 21 C 1.47833 * 120.00021 * 357.77692 * 19 18 17 22 22 C 1.40028 * 120.55751 * 212.58802 * 21 19 18 23 23 C 1.38356 * 118.28413 * 179.73635 * 22 21 19 24 24 C 1.38359 * 119.30683 * 0.53575 * 23 22 21 25 25 C 1.50700 * 119.46362 * 179.69915 * 24 23 22 26 26 F 1.39896 * 109.47170 * 210.02340 * 25 24 23 27 27 F 1.39898 * 109.46911 * 330.02821 * 25 24 23 28 28 N 1.31924 * 121.07571 * 359.72401 * 24 23 22 29 29 C 1.31697 * 121.88187 * 0.02562 * 28 24 23 30 30 H 1.08999 * 109.47283 * 306.39834 * 1 2 3 31 31 H 1.09002 * 109.47451 * 66.40165 * 1 2 3 32 32 H 1.09008 * 109.46929 * 186.40092 * 1 2 3 33 33 H 1.09004 * 109.48052 * 65.62172 * 4 2 1 34 34 H 1.09002 * 109.50789 * 305.53609 * 4 2 1 35 35 H 0.96996 * 119.99847 * 25.02123 * 7 5 4 36 36 H 0.97003 * 119.99251 * 0.02562 * 11 10 8 37 37 H 1.08995 * 109.49859 * 58.59567 * 16 5 4 38 38 H 1.09005 * 109.49393 * 178.69382 * 16 5 4 39 39 H 1.08996 * 109.58542 * 174.42353 * 17 16 5 40 40 H 1.08999 * 109.58519 * 294.70830 * 17 16 5 41 41 H 1.07993 * 120.85844 * 359.97438 * 22 21 19 42 42 H 1.08000 * 120.34809 * 180.24182 * 23 22 21 43 43 H 1.09004 * 109.47021 * 90.02004 * 25 24 23 44 44 H 1.08001 * 119.71381 * 180.02562 * 29 28 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8953 1.0270 0.0000 4 6 2.0435 -0.7310 -1.2440 5 6 3.5675 -0.8495 -1.1690 6 1 3.9376 -1.3475 -2.0650 7 7 4.1570 0.4885 -1.0755 8 6 5.4411 0.7021 -1.5006 9 1 6.0194 -0.1158 -1.9043 10 6 5.9998 1.9696 -1.4115 11 7 5.2953 2.9664 -0.9190 12 14 7.7512 2.2612 -1.9920 13 1 7.7405 2.6379 -3.4284 14 1 8.5456 1.0195 -1.8118 15 1 8.3600 3.3581 -1.1972 16 6 3.9569 -1.6656 0.0658 17 6 3.4650 -0.9451 1.3251 18 7 2.0225 -0.6979 1.1955 19 6 1.1673 -1.1041 2.1547 20 8 -0.0189 -0.8580 2.0552 21 6 1.6719 -1.8488 3.3278 22 6 0.8808 -2.8253 3.9454 23 6 1.4019 -3.4975 5.0366 24 6 2.6712 -3.1788 5.4855 25 6 3.2396 -3.9040 6.6780 26 9 4.1190 -3.0582 7.3625 27 9 2.1989 -4.2845 7.5319 28 7 3.3919 -2.2500 4.8869 29 6 2.9420 -1.5862 3.8421 30 1 -0.3634 0.6098 0.8272 31 1 -0.3634 0.4114 -0.9417 32 1 -0.3633 -1.0213 0.1146 33 1 1.7658 -0.1696 -2.1361 34 1 1.6030 -1.7270 -1.2887 35 1 3.6377 1.2230 -0.7126 36 1 4.3857 2.8150 -0.6179 37 1 3.4984 -2.6527 0.0089 38 1 5.0413 -1.7693 0.1062 39 1 3.6518 -1.5688 2.1993 40 1 3.9921 0.0028 1.4331 41 1 -0.1090 -3.0506 3.5770 42 1 0.8221 -4.2598 5.5358 43 1 3.7764 -4.7911 6.3418 44 1 3.5621 -0.8331 3.3788 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044626305.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:32:45 Heat of formation + Delta-G solvation = -47.022456 kcal Electronic energy + Delta-G solvation = -30111.536855 eV Core-core repulsion = 25701.500507 eV Total energy + Delta-G solvation = -4410.036348 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -49.35532 -47.35313 -41.32580 -39.81371 -37.66427 -34.66543 -33.83203 -32.91689 -32.15381 -31.68154 -28.99953 -27.60757 -27.05535 -24.86456 -23.97666 -23.50654 -23.16150 -21.89457 -20.46946 -18.99921 -18.19740 -17.95618 -17.84726 -17.35843 -17.12827 -16.57063 -15.76170 -15.62856 -15.31002 -14.85252 -14.68115 -14.29641 -14.17035 -14.00067 -13.82258 -13.70456 -13.63696 -13.41299 -13.31396 -13.18769 -12.84482 -12.79994 -12.21572 -12.03156 -11.76392 -11.59708 -11.36331 -10.89993 -10.82176 -10.64756 -10.46039 -10.31896 -10.29800 -10.07268 -10.02212 -9.54249 -9.23718 -9.08121 -8.98043 -8.40693 -7.12786 -6.16631 -3.18191 0.15613 0.76289 2.54444 2.86960 2.96412 3.34633 3.48111 3.51927 3.66102 3.68492 3.88526 4.25590 4.33844 4.43506 4.49387 4.61043 4.74187 4.80398 4.95654 5.09691 5.14631 5.19019 5.31315 5.44874 5.48699 5.53950 5.57333 5.63512 5.68401 5.81316 5.88826 5.96830 6.02864 6.10945 6.22288 6.31225 6.39038 6.55907 6.57016 6.64609 6.84376 7.30949 7.43837 7.74665 8.09360 8.68007 9.13539 10.00042 10.14747 11.30925 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.012565 B = 0.003212 C = 0.002707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2227.868638 B = 8714.513670 C =10341.522962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.146 3.854 3 H 0.079 0.921 4 C -0.135 4.135 5 C 0.179 3.821 6 H 0.053 0.947 7 N -0.733 5.733 8 C -0.333 4.333 9 H 0.065 0.935 10 C -0.043 4.043 11 N -0.942 5.942 12 Si 1.081 2.919 13 H -0.296 1.296 14 H -0.295 1.295 15 H -0.288 1.288 16 C -0.148 4.148 17 C 0.083 3.917 18 N -0.586 5.586 19 C 0.558 3.442 20 O -0.531 6.531 21 C -0.161 4.161 22 C -0.021 4.021 23 C -0.148 4.148 24 C 0.062 3.938 25 C 0.328 3.672 26 F -0.184 7.184 27 F -0.194 7.194 28 N -0.455 5.455 29 C 0.123 3.877 30 H 0.072 0.928 31 H 0.044 0.956 32 H 0.064 0.936 33 H 0.076 0.924 34 H 0.063 0.937 35 H 0.366 0.634 36 H 0.254 0.746 37 H 0.050 0.950 38 H 0.077 0.923 39 H 0.092 0.908 40 H 0.090 0.910 41 H 0.152 0.848 42 H 0.151 0.849 43 H 0.132 0.868 44 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.074 -15.933 10.743 20.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.044 3.956 3 H 0.097 0.903 4 C -0.174 4.174 5 C 0.068 3.932 6 H 0.071 0.929 7 N -0.377 5.377 8 C -0.464 4.464 9 H 0.083 0.917 10 C -0.240 4.240 11 N -0.587 5.587 12 Si 0.912 3.088 13 H -0.224 1.224 14 H -0.222 1.222 15 H -0.214 1.214 16 C -0.189 4.189 17 C -0.039 4.039 18 N -0.318 5.318 19 C 0.345 3.655 20 O -0.410 6.410 21 C -0.166 4.166 22 C -0.047 4.047 23 C -0.168 4.168 24 C -0.077 4.077 25 C 0.273 3.727 26 F -0.165 7.165 27 F -0.176 7.176 28 N -0.164 5.164 29 C -0.034 4.034 30 H 0.091 0.909 31 H 0.063 0.937 32 H 0.083 0.917 33 H 0.094 0.906 34 H 0.081 0.919 35 H 0.201 0.799 36 H 0.065 0.935 37 H 0.068 0.932 38 H 0.095 0.905 39 H 0.110 0.890 40 H 0.108 0.892 41 H 0.170 0.830 42 H 0.168 0.832 43 H 0.149 0.851 44 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -6.510 -14.599 10.753 19.265 hybrid contribution -1.990 -1.134 -0.016 2.291 sum -8.500 -15.733 10.738 20.858 Atomic orbital electron populations 1.22208 0.92876 1.03348 1.00813 1.21306 0.95118 0.95794 0.83353 0.90326 1.22268 0.97476 1.00409 0.97207 1.20130 0.90171 0.87750 0.95100 0.92891 1.42517 1.14124 1.04665 1.76381 1.20047 0.90411 0.97043 1.38855 0.91708 1.25732 1.06058 0.91553 1.00695 1.70878 1.10944 1.32363 1.44507 0.83219 0.74473 0.75167 0.75978 1.22375 1.22152 1.21409 1.22503 1.01702 0.97903 0.96793 1.22626 0.79174 1.02320 0.99753 1.48103 1.07771 1.56028 1.19862 1.17991 0.85967 0.79440 0.82129 1.90843 1.15832 1.56961 1.77397 1.21300 0.96512 0.99807 0.98970 1.21658 0.99415 0.91386 0.92255 1.21809 0.95638 1.01761 0.97574 1.21873 0.92804 0.95792 0.97263 1.20085 0.79336 0.91550 0.81735 1.93053 1.68808 1.73500 1.81139 1.93019 1.60158 1.91709 1.72676 1.67409 1.35643 1.05452 1.07852 1.23766 0.92338 0.97237 0.90073 0.90909 0.93687 0.91679 0.90570 0.91855 0.79926 0.93470 0.93158 0.90474 0.89042 0.89210 0.83043 0.83174 0.85092 0.79455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.98 7.60 37.15 0.28 -1.70 16 2 C 0.15 2.29 3.19 -67.62 -0.22 2.07 16 3 H 0.08 1.38 6.65 -51.93 -0.35 1.03 16 4 C -0.13 -2.09 5.07 -26.63 -0.13 -2.22 16 5 C 0.18 3.23 3.10 -67.88 -0.21 3.02 16 6 H 0.05 1.01 8.08 -51.93 -0.42 0.59 16 7 N -0.73 -16.55 4.31 -53.38 -0.23 -16.78 16 8 C -0.33 -8.67 9.93 -15.06 -0.15 -8.82 16 9 H 0.06 1.68 7.83 -52.49 -0.41 1.27 16 10 C -0.04 -1.17 5.50 -17.43 -0.10 -1.27 16 11 N -0.94 -27.84 13.70 55.49 0.76 -27.08 16 12 Si 1.08 25.01 29.92 -169.99 -5.09 19.92 16 13 H -0.30 -6.73 7.11 56.52 0.40 -6.33 16 14 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 15 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 16 C -0.15 -2.32 5.78 -26.60 -0.15 -2.48 16 17 C 0.08 1.22 4.68 -3.71 -0.02 1.20 16 18 N -0.59 -8.68 2.97 -166.35 -0.49 -9.17 16 19 C 0.56 8.12 7.32 -12.33 -0.09 8.03 16 20 O -0.53 -8.68 12.30 5.32 0.07 -8.62 16 21 C -0.16 -1.99 5.54 -104.82 -0.58 -2.58 16 22 C -0.02 -0.21 9.75 -38.87 -0.38 -0.59 16 23 C -0.15 -1.31 9.42 -39.49 -0.37 -1.68 16 24 C 0.06 0.63 6.58 -82.51 -0.54 0.09 16 25 C 0.33 2.74 5.72 36.01 0.21 2.95 16 26 F -0.18 -2.07 17.05 2.25 0.04 -2.03 16 27 F -0.19 -1.68 16.45 2.25 0.04 -1.65 16 28 N -0.46 -5.67 9.94 -9.62 -0.10 -5.77 16 29 C 0.12 1.53 8.64 -17.13 -0.15 1.38 16 30 H 0.07 1.15 6.70 -51.93 -0.35 0.81 16 31 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.06 0.98 6.78 -51.92 -0.35 0.63 16 33 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 34 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.37 8.61 4.90 -40.82 -0.20 8.41 16 36 H 0.25 7.38 6.77 -40.82 -0.28 7.10 16 37 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 39 H 0.09 1.16 3.52 -53.05 -0.19 0.98 16 40 H 0.09 1.54 7.74 -51.93 -0.40 1.14 16 41 H 0.15 1.35 8.02 -52.49 -0.42 0.93 16 42 H 0.15 0.91 7.59 -52.49 -0.40 0.51 16 43 H 0.13 0.62 8.14 -51.93 -0.42 0.19 16 44 H 0.19 2.28 5.32 -52.49 -0.28 2.00 16 LS Contribution 354.53 15.07 5.34 5.34 Total: -1.00 -31.38 354.53 -7.64 -39.02 By element: Atomic # 1 Polarization: 14.78 SS G_CDS: -5.37 Total: 9.41 kcal Atomic # 6 Polarization: 0.00 SS G_CDS: -2.60 Total: -2.60 kcal Atomic # 7 Polarization: -58.74 SS G_CDS: -0.06 Total: -58.80 kcal Atomic # 8 Polarization: -8.68 SS G_CDS: 0.07 Total: -8.62 kcal Atomic # 9 Polarization: -3.75 SS G_CDS: 0.08 Total: -3.67 kcal Atomic # 14 Polarization: 25.01 SS G_CDS: -5.09 Total: 19.92 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -31.38 -7.64 -39.02 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044626305.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.005 kcal (2) G-P(sol) polarization free energy of solvation -31.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds