Wall clock time and date at job start Wed Apr 1 2020 00:32:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09000 * 109.58319 * 2 1 4 4 C 1.53156 * 109.59320 * 239.55983 * 2 1 3 5 5 C 1.53043 * 109.33248 * 185.56825 * 4 2 1 6 6 H 1.08993 * 109.46290 * 181.39017 * 5 4 2 7 7 N 1.46507 * 109.45849 * 301.36365 * 5 4 2 8 8 C 1.36932 * 119.99506 * 205.02305 * 7 5 4 9 9 H 1.07997 * 120.00784 * 359.97438 * 8 7 5 10 10 C 1.38811 * 119.99528 * 180.02562 * 8 7 5 11 11 N 1.31618 * 120.00621 * 359.97438 * 10 8 7 12 12 Si 1.86807 * 119.99775 * 180.02562 * 10 8 7 13 13 H 1.48496 * 109.47402 * 89.99873 * 12 10 8 14 14 H 1.48499 * 109.46981 * 329.99592 * 12 10 8 15 15 H 1.48510 * 109.46828 * 209.99830 * 12 10 8 16 16 C 1.53048 * 109.52202 * 61.37372 * 5 4 2 17 17 C 1.53197 * 109.31291 * 298.64200 * 16 5 4 18 18 N 1.46923 * 108.77401 * 54.63702 * 17 16 5 19 19 C 1.34778 * 120.62923 * 126.36827 * 18 17 16 20 20 O 1.21555 * 119.99670 * 177.77507 * 19 18 17 21 21 C 1.47833 * 120.00021 * 357.77692 * 19 18 17 22 22 C 1.40028 * 120.55751 * 212.58802 * 21 19 18 23 23 C 1.38356 * 118.28413 * 179.73635 * 22 21 19 24 24 C 1.38359 * 119.30683 * 0.53575 * 23 22 21 25 25 C 1.50700 * 119.46362 * 179.69915 * 24 23 22 26 26 F 1.39896 * 109.47170 * 210.02340 * 25 24 23 27 27 F 1.39898 * 109.46911 * 330.02821 * 25 24 23 28 28 N 1.31924 * 121.07571 * 359.72401 * 24 23 22 29 29 C 1.31697 * 121.88187 * 0.02562 * 28 24 23 30 30 H 1.08999 * 109.47283 * 306.39834 * 1 2 3 31 31 H 1.09002 * 109.47451 * 66.40165 * 1 2 3 32 32 H 1.09008 * 109.46929 * 186.40092 * 1 2 3 33 33 H 1.09004 * 109.48052 * 65.62172 * 4 2 1 34 34 H 1.09002 * 109.50789 * 305.53609 * 4 2 1 35 35 H 0.96996 * 119.99847 * 25.02123 * 7 5 4 36 36 H 0.97003 * 119.99251 * 0.02562 * 11 10 8 37 37 H 1.08995 * 109.49859 * 58.59567 * 16 5 4 38 38 H 1.09005 * 109.49393 * 178.69382 * 16 5 4 39 39 H 1.08996 * 109.58542 * 174.42353 * 17 16 5 40 40 H 1.08999 * 109.58519 * 294.70830 * 17 16 5 41 41 H 1.07993 * 120.85844 * 359.97438 * 22 21 19 42 42 H 1.08000 * 120.34809 * 180.24182 * 23 22 21 43 43 H 1.09004 * 109.47021 * 90.02004 * 25 24 23 44 44 H 1.08001 * 119.71381 * 180.02562 * 29 28 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8953 1.0270 0.0000 4 6 2.0435 -0.7310 -1.2440 5 6 3.5675 -0.8495 -1.1690 6 1 3.9376 -1.3475 -2.0650 7 7 4.1570 0.4885 -1.0755 8 6 5.4411 0.7021 -1.5006 9 1 6.0194 -0.1158 -1.9043 10 6 5.9998 1.9696 -1.4115 11 7 5.2953 2.9664 -0.9190 12 14 7.7512 2.2612 -1.9920 13 1 7.7405 2.6379 -3.4284 14 1 8.5456 1.0195 -1.8118 15 1 8.3600 3.3581 -1.1972 16 6 3.9569 -1.6656 0.0658 17 6 3.4650 -0.9451 1.3251 18 7 2.0225 -0.6979 1.1955 19 6 1.1673 -1.1041 2.1547 20 8 -0.0189 -0.8580 2.0552 21 6 1.6719 -1.8488 3.3278 22 6 0.8808 -2.8253 3.9454 23 6 1.4019 -3.4975 5.0366 24 6 2.6712 -3.1788 5.4855 25 6 3.2396 -3.9040 6.6780 26 9 4.1190 -3.0582 7.3625 27 9 2.1989 -4.2845 7.5319 28 7 3.3919 -2.2500 4.8869 29 6 2.9420 -1.5862 3.8421 30 1 -0.3634 0.6098 0.8272 31 1 -0.3634 0.4114 -0.9417 32 1 -0.3633 -1.0213 0.1146 33 1 1.7658 -0.1696 -2.1361 34 1 1.6030 -1.7270 -1.2887 35 1 3.6377 1.2230 -0.7126 36 1 4.3857 2.8150 -0.6179 37 1 3.4984 -2.6527 0.0089 38 1 5.0413 -1.7693 0.1062 39 1 3.6518 -1.5688 2.1993 40 1 3.9921 0.0028 1.4331 41 1 -0.1090 -3.0506 3.5770 42 1 0.8221 -4.2598 5.5358 43 1 3.7764 -4.7911 6.3418 44 1 3.5621 -0.8331 3.3788 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044626305.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:32:44 Heat of formation + Delta-G solvation = -65.883457 kcal Electronic energy + Delta-G solvation = -30112.354729 eV Core-core repulsion = 25701.500507 eV Total energy + Delta-G solvation = -4410.854222 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -50.04266 -48.06409 -42.37061 -40.85769 -39.00431 -36.26247 -34.98019 -33.91831 -33.68269 -32.68880 -30.68207 -28.72485 -28.09119 -26.01167 -25.53631 -24.89617 -24.15399 -23.01420 -21.68942 -20.32323 -19.34230 -18.93719 -18.76993 -18.52941 -18.11357 -17.53259 -17.09024 -16.77696 -16.48676 -16.23560 -15.76786 -15.64786 -15.42846 -15.00840 -14.96012 -14.89151 -14.65646 -14.53345 -14.38247 -14.17202 -14.04952 -13.71767 -13.43374 -13.37695 -13.16378 -12.70227 -12.65473 -12.41422 -12.23921 -12.12523 -11.91060 -11.82867 -11.69871 -11.20556 -11.16395 -10.98332 -10.88978 -10.45680 -10.16255 -9.69599 -9.06964 -8.32727 -5.27164 -0.71554 -0.05714 1.48340 1.60701 1.69976 1.73547 1.83722 2.20239 2.46328 2.73677 3.04650 3.14917 3.22733 3.44538 3.53071 3.64254 3.69914 3.76960 3.83503 3.88149 3.93026 3.98359 4.09744 4.15551 4.21530 4.35681 4.39573 4.50034 4.56937 4.66472 4.75654 4.80843 4.82894 4.92691 4.99003 5.13452 5.14956 5.20542 5.21251 5.31506 5.57243 5.67360 6.25443 6.46430 6.54485 6.92720 7.13711 8.04545 8.16110 9.18554 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.012565 B = 0.003212 C = 0.002707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2227.868638 B = 8714.513670 C =10341.522962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.147 3.853 3 H 0.052 0.948 4 C -0.123 4.123 5 C 0.171 3.829 6 H 0.047 0.953 7 N -0.742 5.742 8 C -0.320 4.320 9 H 0.067 0.933 10 C -0.104 4.104 11 N -0.978 5.978 12 Si 1.125 2.875 13 H -0.290 1.290 14 H -0.272 1.272 15 H -0.298 1.298 16 C -0.139 4.139 17 C 0.092 3.908 18 N -0.587 5.587 19 C 0.560 3.440 20 O -0.550 6.550 21 C -0.174 4.174 22 C -0.017 4.017 23 C -0.132 4.132 24 C 0.055 3.945 25 C 0.326 3.674 26 F -0.203 7.203 27 F -0.195 7.195 28 N -0.477 5.477 29 C 0.115 3.885 30 H 0.058 0.942 31 H 0.057 0.943 32 H 0.066 0.934 33 H 0.072 0.928 34 H 0.086 0.914 35 H 0.359 0.641 36 H 0.243 0.757 37 H 0.077 0.923 38 H 0.064 0.936 39 H 0.117 0.883 40 H 0.058 0.942 41 H 0.167 0.833 42 H 0.185 0.815 43 H 0.176 0.824 44 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.584 -18.888 11.443 23.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.044 3.956 3 H 0.070 0.930 4 C -0.161 4.161 5 C 0.063 3.937 6 H 0.065 0.935 7 N -0.385 5.385 8 C -0.451 4.451 9 H 0.085 0.915 10 C -0.295 4.295 11 N -0.626 5.626 12 Si 0.951 3.049 13 H -0.217 1.217 14 H -0.197 1.197 15 H -0.225 1.225 16 C -0.180 4.180 17 C -0.030 4.030 18 N -0.318 5.318 19 C 0.348 3.652 20 O -0.431 6.431 21 C -0.179 4.179 22 C -0.043 4.043 23 C -0.152 4.152 24 C -0.083 4.083 25 C 0.272 3.728 26 F -0.184 7.184 27 F -0.176 7.176 28 N -0.186 5.186 29 C -0.042 4.042 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.085 0.915 33 H 0.091 0.909 34 H 0.105 0.895 35 H 0.193 0.807 36 H 0.053 0.947 37 H 0.096 0.904 38 H 0.083 0.917 39 H 0.134 0.866 40 H 0.076 0.924 41 H 0.185 0.815 42 H 0.202 0.798 43 H 0.192 0.808 44 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -7.037 -17.617 11.454 22.160 hybrid contribution -1.918 -0.321 -0.162 1.951 sum -8.954 -17.938 11.291 23.009 Atomic orbital electron populations 1.22056 0.91793 1.03139 1.00877 1.21208 0.95798 0.94627 0.83979 0.93025 1.22144 0.95490 1.01578 0.96920 1.20372 0.91711 0.85774 0.95881 0.93523 1.42665 1.13252 1.06387 1.76224 1.20350 0.91567 0.96707 1.36523 0.91486 1.26968 1.09078 0.91910 1.01540 1.70981 1.10882 1.33425 1.47355 0.82637 0.71135 0.75574 0.75555 1.21682 1.19735 1.22512 1.22362 1.01141 0.98762 0.95722 1.22506 0.78916 1.01115 1.00417 1.48071 1.07763 1.56104 1.19901 1.18275 0.85601 0.79017 0.82302 1.90831 1.16585 1.57711 1.77934 1.21135 0.97036 1.00985 0.98768 1.21909 0.99709 0.90481 0.92182 1.22135 0.94987 1.01503 0.96527 1.22342 0.93311 0.95097 0.97576 1.20516 0.79230 0.92308 0.80717 1.93016 1.69479 1.74405 1.81547 1.93019 1.60292 1.91585 1.72677 1.67398 1.36622 1.06403 1.08159 1.23587 0.92472 0.97509 0.90674 0.92348 0.92462 0.91528 0.90933 0.89503 0.80741 0.94696 0.90440 0.91692 0.86583 0.92350 0.81504 0.79777 0.80784 0.80298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.50 7.60 71.98 0.55 -2.95 16 2 C 0.15 4.60 3.19 44.96 0.14 4.75 16 3 H 0.05 1.91 6.65 -2.39 -0.02 1.89 16 4 C -0.12 -3.70 5.07 30.66 0.16 -3.55 16 5 C 0.17 6.12 3.10 45.02 0.14 6.26 16 6 H 0.05 1.73 8.08 -2.39 -0.02 1.71 16 7 N -0.74 -34.25 4.31 -322.80 -1.39 -35.64 16 8 C -0.32 -16.86 9.93 84.03 0.83 -16.02 16 9 H 0.07 3.45 7.83 -2.91 -0.02 3.43 16 10 C -0.10 -5.79 5.50 84.86 0.47 -5.33 16 11 N -0.98 -59.66 13.70 21.65 0.30 -59.36 16 12 Si 1.12 50.85 29.92 68.60 2.05 52.91 16 13 H -0.29 -12.67 7.11 99.48 0.71 -11.96 16 14 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 15 H -0.30 -13.90 7.11 99.48 0.71 -13.19 16 16 C -0.14 -4.25 5.78 30.68 0.18 -4.07 16 17 C 0.09 2.73 4.68 86.36 0.40 3.13 16 18 N -0.59 -17.30 2.97 -798.48 -2.37 -19.67 16 19 C 0.56 15.88 7.32 86.78 0.64 16.51 16 20 O -0.55 -17.54 12.30 -3.89 -0.05 -17.59 16 21 C -0.17 -4.08 5.54 -19.99 -0.11 -4.19 16 22 C -0.02 -0.29 9.75 22.73 0.22 -0.07 16 23 C -0.13 -1.87 9.42 22.33 0.21 -1.66 16 24 C 0.06 1.00 6.58 42.57 0.28 1.28 16 25 C 0.33 4.48 5.72 71.24 0.41 4.89 16 26 F -0.20 -4.22 17.05 44.97 0.77 -3.45 16 27 F -0.19 -2.74 16.45 44.97 0.74 -2.00 16 28 N -0.48 -11.25 9.94 -184.35 -1.83 -13.08 16 29 C 0.12 2.77 8.64 85.02 0.73 3.50 16 30 H 0.06 1.85 6.70 -2.39 -0.02 1.84 16 31 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 32 H 0.07 1.91 6.78 -2.38 -0.02 1.89 16 33 H 0.07 2.25 8.14 -2.38 -0.02 2.23 16 34 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 35 H 0.36 17.65 4.90 -92.71 -0.45 17.20 16 36 H 0.24 14.76 6.77 -92.71 -0.63 14.14 16 37 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 38 H 0.06 2.15 8.14 -2.38 -0.02 2.13 16 39 H 0.12 2.90 3.52 -3.44 -0.01 2.89 16 40 H 0.06 2.11 7.74 -2.39 -0.02 2.09 16 41 H 0.17 2.44 8.02 -2.91 -0.02 2.41 16 42 H 0.18 1.34 7.59 -2.91 -0.02 1.32 16 43 H 0.18 0.92 8.14 -2.38 -0.02 0.90 16 44 H 0.18 4.46 5.32 -2.91 -0.02 4.44 16 Total: -1.00 -69.05 354.53 4.20 -64.85 By element: Atomic # 1 Polarization: 29.83 SS G_CDS: 0.74 Total: 30.57 kcal Atomic # 6 Polarization: -2.78 SS G_CDS: 5.25 Total: 2.47 kcal Atomic # 7 Polarization: -122.45 SS G_CDS: -5.30 Total: -127.75 kcal Atomic # 8 Polarization: -17.54 SS G_CDS: -0.05 Total: -17.59 kcal Atomic # 9 Polarization: -6.96 SS G_CDS: 1.51 Total: -5.46 kcal Atomic # 14 Polarization: 50.85 SS G_CDS: 2.05 Total: 52.91 kcal Total: -69.05 4.20 -64.85 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044626305.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.030 kcal (2) G-P(sol) polarization free energy of solvation -69.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds