Wall clock time and date at job start Wed Apr 1 2020 00:32:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 109.58503 * 2 1 4 4 C 1.53188 * 109.58861 * 239.71844 * 2 1 3 5 5 C 1.53043 * 109.31601 * 185.57783 * 4 2 1 6 6 H 1.08998 * 109.45601 * 301.34470 * 5 4 2 7 7 N 1.46497 * 109.46092 * 181.38337 * 5 4 2 8 8 C 1.36936 * 119.99861 * 155.00086 * 7 5 4 9 9 H 1.07999 * 120.00041 * 359.97438 * 8 7 5 10 10 C 1.38816 * 120.00215 * 180.02562 * 8 7 5 11 11 N 1.31619 * 119.99661 * 359.97438 * 10 8 7 12 12 Si 1.86796 * 120.00280 * 179.97438 * 10 8 7 13 13 H 1.48500 * 109.46894 * 359.97438 * 12 10 8 14 14 H 1.48500 * 109.47179 * 119.99585 * 12 10 8 15 15 H 1.48501 * 109.47278 * 239.99664 * 12 10 8 16 16 C 1.53038 * 109.53659 * 61.35921 * 5 4 2 17 17 C 1.53189 * 109.31625 * 298.63770 * 16 5 4 18 18 N 1.46925 * 108.77484 * 54.63559 * 17 16 5 19 19 C 1.34785 * 120.63418 * 126.39121 * 18 17 16 20 20 O 1.21546 * 120.00129 * 186.20914 * 19 18 17 21 21 C 1.47840 * 119.99506 * 6.20882 * 19 18 17 22 22 C 1.40027 * 120.55845 * 208.75760 * 21 19 18 23 23 C 1.38354 * 118.28778 * 179.97438 * 22 21 19 24 24 C 1.38351 * 119.30489 * 0.02562 * 23 22 21 25 25 C 1.50701 * 119.46229 * 179.97438 * 24 23 22 26 26 F 1.39907 * 109.46869 * 300.00127 * 25 24 23 27 27 F 1.39901 * 109.47150 * 59.99983 * 25 24 23 28 28 N 1.31930 * 121.07719 * 0.02562 * 24 23 22 29 29 C 1.31691 * 121.88026 * 359.67669 * 28 24 23 30 30 H 1.08994 * 109.46884 * 183.17733 * 1 2 3 31 31 H 1.08999 * 109.47164 * 303.17934 * 1 2 3 32 32 H 1.08998 * 109.47208 * 63.17914 * 1 2 3 33 33 H 1.09003 * 109.49596 * 305.52997 * 4 2 1 34 34 H 1.09000 * 109.49924 * 65.59108 * 4 2 1 35 35 H 0.97000 * 120.00258 * 334.99841 * 7 5 4 36 36 H 0.96997 * 119.99827 * 179.97438 * 11 10 8 37 37 H 1.09002 * 109.49718 * 58.59167 * 16 5 4 38 38 H 1.08997 * 109.49942 * 178.68182 * 16 5 4 39 39 H 1.09000 * 109.58943 * 174.41937 * 17 16 5 40 40 H 1.08997 * 109.58898 * 294.70257 * 17 16 5 41 41 H 1.07999 * 120.85172 * 0.02562 * 22 21 19 42 42 H 1.07999 * 120.34714 * 180.02562 * 23 22 21 43 43 H 1.09002 * 109.47270 * 180.02562 * 25 24 23 44 44 H 1.08006 * 119.71311 * 180.29377 * 29 28 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0436 -0.7277 -1.2463 5 6 3.5676 -0.8465 -1.1712 6 1 4.0062 0.1488 -1.0991 7 7 4.0653 -1.5127 -2.3773 8 6 5.3498 -1.2952 -2.7990 9 1 5.9958 -0.6321 -2.2428 10 6 5.8213 -1.9260 -3.9421 11 7 5.0338 -2.7337 -4.6203 12 14 7.5732 -1.6287 -4.5179 13 1 8.2464 -0.6861 -3.5886 14 1 8.3126 -2.9164 -4.5390 15 1 7.5534 -1.0469 -5.8840 16 6 3.9570 -1.6657 0.0614 17 6 3.4651 -0.9485 1.3225 18 7 2.0226 -0.7010 1.1936 19 6 1.1674 -1.1092 2.1520 20 8 -0.0314 -1.0004 1.9833 21 6 1.6875 -1.6893 3.4085 22 6 0.9344 -2.6277 4.1247 23 6 1.4666 -3.1405 5.2943 24 6 2.7135 -2.7137 5.7151 25 6 3.2964 -3.2696 6.9888 26 9 2.4488 -2.9676 8.0601 27 9 3.4274 -4.6578 6.8747 28 7 3.4002 -1.8272 5.0200 29 6 2.9390 -1.3145 3.8981 30 1 -0.3633 -1.0260 0.0570 31 1 -0.3633 0.5624 0.8601 32 1 -0.3633 0.4637 -0.9171 33 1 1.6030 -1.7236 -1.2935 34 1 1.7656 -0.1644 -2.1370 35 1 3.4850 -2.1079 -2.8771 36 1 5.3631 -3.1742 -5.4193 37 1 3.4984 -2.6527 0.0019 38 1 5.0412 -1.7696 0.1015 39 1 3.6518 -1.5744 2.1952 40 1 3.9922 -0.0009 1.4331 41 1 -0.0366 -2.9435 3.7727 42 1 0.9144 -3.8665 5.8727 43 1 4.2760 -2.8250 7.1645 44 1 3.5330 -0.5945 3.3546 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044626306.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:32:48 Heat of formation + Delta-G solvation = -55.196673 kcal Electronic energy + Delta-G solvation = -29505.321767 eV Core-core repulsion = 25094.930959 eV Total energy + Delta-G solvation = -4410.390809 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.46125 -47.44581 -41.39036 -39.86371 -37.54915 -34.74413 -33.90231 -32.98976 -32.02710 -31.73017 -29.43324 -27.63865 -27.06552 -24.78885 -24.30625 -23.49748 -22.83924 -21.82004 -20.38501 -19.55396 -18.21685 -18.18491 -17.70156 -17.30824 -17.13323 -16.67039 -15.73145 -15.64805 -15.25639 -14.87753 -14.79051 -14.50640 -14.17707 -13.94464 -13.81269 -13.79340 -13.68469 -13.53803 -13.32997 -13.20569 -12.87108 -12.58625 -12.27293 -12.09155 -11.78575 -11.62467 -11.43942 -10.97734 -10.90363 -10.89434 -10.55488 -10.40906 -10.27967 -10.25265 -9.92730 -9.77891 -9.65193 -9.18438 -8.96722 -8.59308 -7.04436 -5.83410 -3.13085 0.04692 0.68699 2.44865 2.72908 2.86293 3.25345 3.38486 3.44041 3.46525 3.70390 3.90704 4.14990 4.22374 4.36409 4.51669 4.55365 4.56711 4.76143 4.84829 5.03961 5.06877 5.14396 5.21999 5.36051 5.41750 5.43284 5.53721 5.55519 5.69074 5.80268 5.91171 5.93866 6.04042 6.16794 6.24682 6.34907 6.37428 6.44819 6.64462 6.79424 6.94930 7.17908 7.29919 7.63147 7.98463 8.34537 9.46051 10.02739 10.37187 11.39068 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.013209 B = 0.002739 C = 0.002375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2119.189785 B =10221.510887 C =11788.277816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.147 3.853 3 H 0.076 0.924 4 C -0.136 4.136 5 C 0.179 3.821 6 H 0.049 0.951 7 N -0.723 5.723 8 C -0.241 4.241 9 H 0.071 0.929 10 C -0.013 4.013 11 N -0.931 5.931 12 Si 0.906 3.094 13 H -0.280 1.280 14 H -0.291 1.291 15 H -0.291 1.291 16 C -0.151 4.151 17 C 0.083 3.917 18 N -0.592 5.592 19 C 0.560 3.440 20 O -0.526 6.526 21 C -0.159 4.159 22 C -0.019 4.019 23 C -0.139 4.139 24 C 0.063 3.937 25 C 0.324 3.676 26 F -0.193 7.193 27 F -0.191 7.191 28 N -0.460 5.460 29 C 0.124 3.876 30 H 0.071 0.929 31 H 0.067 0.933 32 H 0.046 0.954 33 H 0.064 0.936 34 H 0.078 0.922 35 H 0.384 0.616 36 H 0.255 0.745 37 H 0.060 0.940 38 H 0.078 0.922 39 H 0.090 0.910 40 H 0.076 0.924 41 H 0.154 0.846 42 H 0.148 0.852 43 H 0.134 0.866 44 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.042 2.341 21.887 23.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.045 3.955 3 H 0.094 0.906 4 C -0.175 4.175 5 C 0.068 3.932 6 H 0.067 0.933 7 N -0.364 5.364 8 C -0.372 4.372 9 H 0.089 0.911 10 C -0.209 4.209 11 N -0.579 5.579 12 Si 0.737 3.263 13 H -0.205 1.205 14 H -0.219 1.219 15 H -0.219 1.219 16 C -0.192 4.192 17 C -0.039 4.039 18 N -0.324 5.324 19 C 0.347 3.653 20 O -0.405 6.405 21 C -0.164 4.164 22 C -0.046 4.046 23 C -0.159 4.159 24 C -0.075 4.075 25 C 0.269 3.731 26 F -0.174 7.174 27 F -0.172 7.172 28 N -0.169 5.169 29 C -0.034 4.034 30 H 0.090 0.910 31 H 0.086 0.914 32 H 0.065 0.935 33 H 0.083 0.917 34 H 0.096 0.904 35 H 0.218 0.782 36 H 0.065 0.935 37 H 0.079 0.921 38 H 0.097 0.903 39 H 0.108 0.892 40 H 0.094 0.906 41 H 0.171 0.829 42 H 0.166 0.834 43 H 0.152 0.848 44 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -6.682 2.701 22.051 23.199 hybrid contribution 0.089 -0.591 -0.853 1.042 sum -6.593 2.110 21.198 22.300 Atomic orbital electron populations 1.22221 0.92684 1.03727 1.00693 1.21399 0.95553 0.95065 0.83479 0.90640 1.22313 0.97596 1.01073 0.96478 1.20166 0.90878 0.95012 0.87108 0.93317 1.42431 1.12953 1.54458 1.26509 1.19265 0.89059 1.22381 1.06513 0.91077 1.24761 0.98191 0.99773 0.98151 1.69671 1.35340 1.33567 1.19345 0.86137 0.84432 0.77318 0.78403 1.20511 1.21861 1.21855 1.22702 1.01936 1.00080 0.94493 1.22587 0.79502 1.01036 1.00807 1.48114 1.07643 1.56493 1.20149 1.17987 0.86181 0.78441 0.82687 1.90856 1.14914 1.55492 1.79200 1.21309 0.96760 1.00365 0.98004 1.21726 0.99367 0.91612 0.91871 1.21888 0.95901 1.00822 0.97254 1.21684 0.93088 0.95929 0.96808 1.20122 0.94405 0.77202 0.81331 1.93039 1.74254 1.92875 1.57211 1.93048 1.96560 1.31460 1.96164 1.67313 1.34827 1.08417 1.06323 1.23608 0.92050 0.97166 0.90559 0.91048 0.91401 0.93547 0.91694 0.90388 0.78237 0.93497 0.92105 0.90322 0.89228 0.90551 0.82867 0.83424 0.84834 0.79871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.79 7.59 37.16 0.28 -1.51 16 2 C 0.15 1.94 3.49 -67.60 -0.24 1.70 16 3 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 4 C -0.14 -2.11 4.84 -26.61 -0.13 -2.24 16 5 C 0.18 3.22 2.73 -67.89 -0.19 3.03 16 6 H 0.05 0.88 8.08 -51.93 -0.42 0.46 16 7 N -0.72 -17.14 5.12 -53.39 -0.27 -17.42 16 8 C -0.24 -6.37 9.93 -15.06 -0.15 -6.52 16 9 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 10 C -0.01 -0.35 5.50 -17.43 -0.10 -0.44 16 11 N -0.93 -27.49 13.06 55.49 0.72 -26.77 16 12 Si 0.91 21.75 29.55 -169.99 -5.02 16.72 16 13 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 14 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 15 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 16 C -0.15 -2.36 5.66 -26.61 -0.15 -2.51 16 17 C 0.08 0.97 4.71 -3.71 -0.02 0.95 16 18 N -0.59 -7.43 2.97 -166.33 -0.49 -7.92 16 19 C 0.56 7.23 7.39 -12.33 -0.09 7.14 16 20 O -0.53 -7.87 12.15 5.33 0.06 -7.81 16 21 C -0.16 -1.75 5.49 -104.82 -0.58 -2.33 16 22 C -0.02 -0.19 9.73 -38.87 -0.38 -0.57 16 23 C -0.14 -1.23 9.60 -39.50 -0.38 -1.61 16 24 C 0.06 0.60 6.28 -82.51 -0.52 0.08 16 25 C 0.32 2.55 5.54 36.01 0.20 2.75 16 26 F -0.19 -1.68 17.25 2.25 0.04 -1.65 16 27 F -0.19 -1.75 17.25 2.25 0.04 -1.71 16 28 N -0.46 -4.72 10.23 -9.14 -0.09 -4.81 16 29 C 0.12 1.24 8.61 -17.13 -0.15 1.10 16 30 H 0.07 1.05 6.75 -51.93 -0.35 0.70 16 31 H 0.07 0.92 6.75 -51.93 -0.35 0.57 16 32 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 34 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 35 H 0.38 9.87 7.80 -40.82 -0.32 9.55 16 36 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 37 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 38 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 39 H 0.09 0.93 4.08 -51.93 -0.21 0.71 16 40 H 0.08 0.76 8.01 -51.93 -0.42 0.34 16 41 H 0.15 1.34 7.97 -52.49 -0.42 0.93 16 42 H 0.15 1.00 8.06 -52.49 -0.42 0.58 16 43 H 0.13 0.75 8.10 -51.93 -0.42 0.33 16 44 H 0.18 1.54 5.33 -52.48 -0.28 1.26 16 LS Contribution 361.91 15.07 5.45 5.45 Total: -1.00 -31.05 361.91 -7.83 -38.87 By element: Atomic # 1 Polarization: 13.69 SS G_CDS: -5.69 Total: 8.00 kcal Atomic # 6 Polarization: 1.60 SS G_CDS: -2.57 Total: -0.98 kcal Atomic # 7 Polarization: -56.78 SS G_CDS: -0.14 Total: -56.92 kcal Atomic # 8 Polarization: -7.87 SS G_CDS: 0.06 Total: -7.81 kcal Atomic # 9 Polarization: -3.43 SS G_CDS: 0.08 Total: -3.35 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -31.05 -7.83 -38.87 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044626306.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.324 kcal (2) G-P(sol) polarization free energy of solvation -31.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds