Wall clock time and date at job start Wed Apr 1 2020 00:32:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 109.58503 * 2 1 4 4 C 1.53188 * 109.58861 * 239.71844 * 2 1 3 5 5 C 1.53043 * 109.31601 * 185.57783 * 4 2 1 6 6 H 1.08998 * 109.45601 * 301.34470 * 5 4 2 7 7 N 1.46497 * 109.46092 * 181.38337 * 5 4 2 8 8 C 1.36936 * 119.99861 * 155.00086 * 7 5 4 9 9 H 1.07999 * 120.00041 * 359.97438 * 8 7 5 10 10 C 1.38816 * 120.00215 * 180.02562 * 8 7 5 11 11 N 1.31619 * 119.99661 * 359.97438 * 10 8 7 12 12 Si 1.86796 * 120.00280 * 179.97438 * 10 8 7 13 13 H 1.48500 * 109.46894 * 359.97438 * 12 10 8 14 14 H 1.48500 * 109.47179 * 119.99585 * 12 10 8 15 15 H 1.48501 * 109.47278 * 239.99664 * 12 10 8 16 16 C 1.53038 * 109.53659 * 61.35921 * 5 4 2 17 17 C 1.53189 * 109.31625 * 298.63770 * 16 5 4 18 18 N 1.46925 * 108.77484 * 54.63559 * 17 16 5 19 19 C 1.34785 * 120.63418 * 126.39121 * 18 17 16 20 20 O 1.21546 * 120.00129 * 186.20914 * 19 18 17 21 21 C 1.47840 * 119.99506 * 6.20882 * 19 18 17 22 22 C 1.40027 * 120.55845 * 208.75760 * 21 19 18 23 23 C 1.38354 * 118.28778 * 179.97438 * 22 21 19 24 24 C 1.38351 * 119.30489 * 0.02562 * 23 22 21 25 25 C 1.50701 * 119.46229 * 179.97438 * 24 23 22 26 26 F 1.39907 * 109.46869 * 300.00127 * 25 24 23 27 27 F 1.39901 * 109.47150 * 59.99983 * 25 24 23 28 28 N 1.31930 * 121.07719 * 0.02562 * 24 23 22 29 29 C 1.31691 * 121.88026 * 359.67669 * 28 24 23 30 30 H 1.08994 * 109.46884 * 183.17733 * 1 2 3 31 31 H 1.08999 * 109.47164 * 303.17934 * 1 2 3 32 32 H 1.08998 * 109.47208 * 63.17914 * 1 2 3 33 33 H 1.09003 * 109.49596 * 305.52997 * 4 2 1 34 34 H 1.09000 * 109.49924 * 65.59108 * 4 2 1 35 35 H 0.97000 * 120.00258 * 334.99841 * 7 5 4 36 36 H 0.96997 * 119.99827 * 179.97438 * 11 10 8 37 37 H 1.09002 * 109.49718 * 58.59167 * 16 5 4 38 38 H 1.08997 * 109.49942 * 178.68182 * 16 5 4 39 39 H 1.09000 * 109.58943 * 174.41937 * 17 16 5 40 40 H 1.08997 * 109.58898 * 294.70257 * 17 16 5 41 41 H 1.07999 * 120.85172 * 0.02562 * 22 21 19 42 42 H 1.07999 * 120.34714 * 180.02562 * 23 22 21 43 43 H 1.09002 * 109.47270 * 180.02562 * 25 24 23 44 44 H 1.08006 * 119.71311 * 180.29377 * 29 28 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0436 -0.7277 -1.2463 5 6 3.5676 -0.8465 -1.1712 6 1 4.0062 0.1488 -1.0991 7 7 4.0653 -1.5127 -2.3773 8 6 5.3498 -1.2952 -2.7990 9 1 5.9958 -0.6321 -2.2428 10 6 5.8213 -1.9260 -3.9421 11 7 5.0338 -2.7337 -4.6203 12 14 7.5732 -1.6287 -4.5179 13 1 8.2464 -0.6861 -3.5886 14 1 8.3126 -2.9164 -4.5390 15 1 7.5534 -1.0469 -5.8840 16 6 3.9570 -1.6657 0.0614 17 6 3.4651 -0.9485 1.3225 18 7 2.0226 -0.7010 1.1936 19 6 1.1674 -1.1092 2.1520 20 8 -0.0314 -1.0004 1.9833 21 6 1.6875 -1.6893 3.4085 22 6 0.9344 -2.6277 4.1247 23 6 1.4666 -3.1405 5.2943 24 6 2.7135 -2.7137 5.7151 25 6 3.2964 -3.2696 6.9888 26 9 2.4488 -2.9676 8.0601 27 9 3.4274 -4.6578 6.8747 28 7 3.4002 -1.8272 5.0200 29 6 2.9390 -1.3145 3.8981 30 1 -0.3633 -1.0260 0.0570 31 1 -0.3633 0.5624 0.8601 32 1 -0.3633 0.4637 -0.9171 33 1 1.6030 -1.7236 -1.2935 34 1 1.7656 -0.1644 -2.1370 35 1 3.4850 -2.1079 -2.8771 36 1 5.3631 -3.1742 -5.4193 37 1 3.4984 -2.6527 0.0019 38 1 5.0412 -1.7696 0.1015 39 1 3.6518 -1.5744 2.1952 40 1 3.9922 -0.0009 1.4331 41 1 -0.0366 -2.9435 3.7727 42 1 0.9144 -3.8665 5.8727 43 1 4.2760 -2.8250 7.1645 44 1 3.5330 -0.5945 3.3546 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044626306.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:32:47 Heat of formation + Delta-G solvation = -74.113837 kcal Electronic energy + Delta-G solvation = -29506.142077 eV Core-core repulsion = 25094.930959 eV Total energy + Delta-G solvation = -4411.211118 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -50.10900 -48.10009 -42.29127 -40.78165 -38.78352 -36.28011 -34.90763 -33.87009 -33.63446 -32.64361 -31.04643 -28.68854 -28.03898 -26.09982 -25.47806 -24.56579 -23.96623 -22.84717 -21.67856 -20.67876 -19.17716 -18.93187 -18.86330 -18.34944 -18.12608 -17.49256 -16.80302 -16.71497 -16.59414 -16.01704 -15.77395 -15.55522 -15.38699 -15.15040 -14.87023 -14.76986 -14.62601 -14.46789 -14.42074 -14.29914 -13.93633 -13.58001 -13.47762 -13.21101 -13.09053 -12.90460 -12.67486 -12.63447 -12.31837 -12.10524 -12.04491 -11.97783 -11.69975 -11.37858 -11.18100 -11.02887 -10.91502 -10.44053 -10.19092 -9.67876 -8.99992 -7.92677 -5.21286 -0.73464 -0.04925 1.49243 1.49496 1.51700 1.59269 1.77669 2.17346 2.43866 2.57522 3.10541 3.21143 3.28648 3.41164 3.55087 3.63078 3.73175 3.81156 3.84485 3.92866 3.98708 4.06618 4.11351 4.21352 4.31747 4.39898 4.52910 4.59766 4.66011 4.69222 4.73447 4.78958 4.85440 4.98501 5.05835 5.14750 5.20367 5.25152 5.41917 5.49581 5.55213 5.65834 6.27555 6.29681 6.43530 6.98034 7.35203 8.11029 8.33250 9.31235 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.013209 B = 0.002739 C = 0.002375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2119.189785 B =10221.510887 C =11788.277816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.153 3.847 3 H 0.097 0.903 4 C -0.125 4.125 5 C 0.173 3.827 6 H 0.055 0.945 7 N -0.739 5.739 8 C -0.231 4.231 9 H 0.082 0.918 10 C -0.080 4.080 11 N -0.973 5.973 12 Si 0.969 3.031 13 H -0.261 1.261 14 H -0.298 1.298 15 H -0.298 1.298 16 C -0.141 4.141 17 C 0.093 3.907 18 N -0.593 5.593 19 C 0.561 3.439 20 O -0.551 6.551 21 C -0.174 4.174 22 C -0.022 4.022 23 C -0.139 4.139 24 C 0.057 3.943 25 C 0.327 3.673 26 F -0.197 7.197 27 F -0.198 7.198 28 N -0.467 5.467 29 C 0.125 3.875 30 H 0.051 0.949 31 H 0.066 0.934 32 H 0.056 0.944 33 H 0.047 0.953 34 H 0.073 0.927 35 H 0.369 0.631 36 H 0.249 0.751 37 H 0.040 0.960 38 H 0.069 0.931 39 H 0.108 0.892 40 H 0.106 0.894 41 H 0.159 0.841 42 H 0.167 0.833 43 H 0.160 0.840 44 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.198 3.542 24.090 25.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.050 3.950 3 H 0.115 0.885 4 C -0.164 4.164 5 C 0.065 3.935 6 H 0.073 0.927 7 N -0.377 5.377 8 C -0.363 4.363 9 H 0.100 0.900 10 C -0.271 4.271 11 N -0.624 5.624 12 Si 0.799 3.201 13 H -0.185 1.185 14 H -0.225 1.225 15 H -0.225 1.225 16 C -0.182 4.182 17 C -0.029 4.029 18 N -0.325 5.325 19 C 0.349 3.651 20 O -0.431 6.431 21 C -0.179 4.179 22 C -0.049 4.049 23 C -0.158 4.158 24 C -0.081 4.081 25 C 0.272 3.728 26 F -0.179 7.179 27 F -0.180 7.180 28 N -0.176 5.176 29 C -0.033 4.033 30 H 0.070 0.930 31 H 0.085 0.915 32 H 0.075 0.925 33 H 0.066 0.934 34 H 0.091 0.909 35 H 0.200 0.800 36 H 0.057 0.943 37 H 0.059 0.941 38 H 0.088 0.912 39 H 0.126 0.874 40 H 0.124 0.876 41 H 0.176 0.824 42 H 0.185 0.815 43 H 0.177 0.823 44 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -5.833 3.936 24.322 25.319 hybrid contribution -0.256 -0.969 -1.450 1.763 sum -6.089 2.966 22.872 23.854 Atomic orbital electron populations 1.22084 0.92588 1.02511 1.01126 1.21349 0.95521 0.95651 0.82476 0.88538 1.22168 0.95845 1.00470 0.97889 1.20437 0.92237 0.94949 0.85911 0.92666 1.42682 1.12135 1.54641 1.28274 1.19680 0.90034 1.20830 1.05747 0.90017 1.25549 1.01937 1.00617 0.99044 1.69831 1.37128 1.35497 1.19951 0.85124 0.80252 0.77008 0.77719 1.18526 1.22533 1.22520 1.22474 1.01248 0.99112 0.95394 1.22623 0.78981 1.02346 0.98988 1.48127 1.08013 1.56398 1.19925 1.18230 0.85835 0.77838 0.83182 1.90848 1.15958 1.56386 1.79875 1.21207 0.97663 1.01426 0.97565 1.21883 0.99579 0.91339 0.92058 1.22121 0.95899 1.00856 0.96951 1.22031 0.93274 0.95561 0.97238 1.20315 0.95239 0.76758 0.80459 1.93031 1.74605 1.92868 1.57349 1.93035 1.96594 1.32187 1.96158 1.67363 1.35008 1.08766 1.06457 1.23817 0.91706 0.97170 0.90601 0.93032 0.91544 0.92514 0.93414 0.90884 0.79952 0.94264 0.94106 0.91213 0.87450 0.87615 0.82357 0.81521 0.82278 0.78252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.19 7.59 71.98 0.55 -2.64 16 2 C 0.15 3.77 3.49 44.97 0.16 3.93 16 3 H 0.10 2.05 8.14 -2.39 -0.02 2.03 16 4 C -0.12 -3.84 4.84 30.67 0.15 -3.69 16 5 C 0.17 6.09 2.73 45.02 0.12 6.21 16 6 H 0.06 1.89 8.08 -2.39 -0.02 1.87 16 7 N -0.74 -35.29 5.12 -322.82 -1.65 -36.94 16 8 C -0.23 -12.14 9.93 84.03 0.83 -11.31 16 9 H 0.08 4.04 7.83 -2.91 -0.02 4.02 16 10 C -0.08 -4.45 5.50 84.86 0.47 -3.98 16 11 N -0.97 -58.86 13.06 21.65 0.28 -58.58 16 12 Si 0.97 44.90 29.55 68.60 2.03 46.92 16 13 H -0.26 -11.13 7.11 99.48 0.71 -10.42 16 14 H -0.30 -13.97 7.11 99.48 0.71 -13.26 16 15 H -0.30 -13.96 7.11 99.48 0.71 -13.25 16 16 C -0.14 -4.27 5.66 30.67 0.17 -4.10 16 17 C 0.09 1.91 4.71 86.36 0.41 2.32 16 18 N -0.59 -13.78 2.97 -798.42 -2.37 -16.15 16 19 C 0.56 13.69 7.39 86.78 0.64 14.33 16 20 O -0.55 -16.07 12.15 -3.86 -0.05 -16.12 16 21 C -0.17 -3.51 5.49 -19.99 -0.11 -3.62 16 22 C -0.02 -0.40 9.73 22.73 0.22 -0.18 16 23 C -0.14 -2.19 9.60 22.32 0.21 -1.97 16 24 C 0.06 0.96 6.28 42.57 0.27 1.22 16 25 C 0.33 4.38 5.54 71.24 0.39 4.78 16 26 F -0.20 -3.04 17.25 44.97 0.78 -2.26 16 27 F -0.20 -3.23 17.25 44.97 0.78 -2.46 16 28 N -0.47 -8.39 10.23 -182.82 -1.87 -10.26 16 29 C 0.12 2.18 8.61 85.02 0.73 2.92 16 30 H 0.05 1.51 6.75 -2.39 -0.02 1.50 16 31 H 0.07 1.72 6.75 -2.39 -0.02 1.71 16 32 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 34 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 35 H 0.37 19.56 7.80 -92.71 -0.72 18.84 16 36 H 0.25 14.66 8.31 -92.71 -0.77 13.89 16 37 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 38 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 39 H 0.11 1.92 4.08 -2.39 -0.01 1.91 16 40 H 0.11 1.65 8.01 -2.39 -0.02 1.63 16 41 H 0.16 2.63 7.97 -2.91 -0.02 2.60 16 42 H 0.17 1.91 8.06 -2.91 -0.02 1.88 16 43 H 0.16 1.33 8.10 -2.39 -0.02 1.31 16 44 H 0.20 2.66 5.33 -2.91 -0.02 2.65 16 Total: -1.00 -67.43 361.91 3.46 -63.96 By element: Atomic # 1 Polarization: 27.34 SS G_CDS: 0.33 Total: 27.67 kcal Atomic # 6 Polarization: -1.00 SS G_CDS: 5.22 Total: 4.22 kcal Atomic # 7 Polarization: -116.32 SS G_CDS: -5.61 Total: -121.93 kcal Atomic # 8 Polarization: -16.07 SS G_CDS: -0.05 Total: -16.12 kcal Atomic # 9 Polarization: -6.27 SS G_CDS: 1.55 Total: -4.72 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 2.03 Total: 46.92 kcal Total: -67.43 3.46 -63.96 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044626306.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.150 kcal (2) G-P(sol) polarization free energy of solvation -67.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds