Wall clock time and date at job start Wed Apr 1 2020 00:31:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08994 * 109.58799 * 2 1 4 4 C 1.53191 * 109.58804 * 120.28756 * 2 1 3 5 5 C 1.53034 * 109.31160 * 174.42003 * 4 2 1 6 6 C 1.53036 * 109.53885 * 298.62753 * 5 4 2 7 7 H 1.09003 * 109.49957 * 181.35211 * 6 5 4 8 8 N 1.46502 * 109.50188 * 301.41759 * 6 5 4 9 9 C 1.34778 * 120.00093 * 205.00043 * 8 6 5 10 10 O 1.21549 * 119.99968 * 359.97438 * 9 8 6 11 11 C 1.47836 * 119.99777 * 179.97438 * 9 8 6 12 12 C 1.40029 * 120.55904 * 179.97438 * 11 9 8 13 13 C 1.38355 * 118.28967 * 180.02562 * 12 11 9 14 14 C 1.38352 * 119.30376 * 0.02562 * 13 12 11 15 15 C 1.50699 * 119.46332 * 179.97438 * 14 13 12 16 16 F 1.39905 * 109.46750 * 300.00307 * 15 14 13 17 17 F 1.39901 * 109.46869 * 59.99451 * 15 14 13 18 18 N 1.31932 * 121.07909 * 359.71634 * 14 13 12 19 19 C 1.31695 * 121.87968 * 0.57121 * 18 14 13 20 20 C 1.53193 * 109.31073 * 61.37158 * 6 5 4 21 21 N 1.46928 * 108.77409 * 305.36145 * 20 6 5 22 22 C 1.36936 * 120.63513 * 233.58919 * 21 20 6 23 23 H 1.07993 * 120.00443 * 150.20206 * 22 21 20 24 24 C 1.38814 * 119.99807 * 330.20182 * 22 21 20 25 25 N 1.31624 * 120.00087 * 344.48423 * 24 22 21 26 26 Si 1.86796 * 120.00164 * 164.48278 * 24 22 21 27 27 H 1.48493 * 109.47223 * 60.00116 * 26 24 22 28 28 H 1.48502 * 109.47440 * 180.02562 * 26 24 22 29 29 H 1.48500 * 109.47171 * 299.99822 * 26 24 22 30 30 H 1.09004 * 109.46471 * 299.71985 * 1 2 3 31 31 H 1.08996 * 109.46876 * 59.71618 * 1 2 3 32 32 H 1.08996 * 109.46854 * 179.71573 * 1 2 3 33 33 H 1.09000 * 109.49630 * 54.46212 * 4 2 1 34 34 H 1.09004 * 109.49273 * 294.36927 * 4 2 1 35 35 H 1.09006 * 109.45823 * 178.61365 * 5 4 2 36 36 H 1.08997 * 109.45166 * 58.65187 * 5 4 2 37 37 H 0.96995 * 119.99639 * 25.00133 * 8 6 5 38 38 H 1.07998 * 120.85164 * 0.04607 * 12 11 9 39 39 H 1.08001 * 120.34658 * 180.02562 * 13 12 11 40 40 H 1.08994 * 109.47484 * 179.97438 * 15 14 13 41 41 H 1.07996 * 119.71909 * 179.70519 * 19 18 14 42 42 H 1.08998 * 109.59046 * 65.14994 * 20 6 5 43 43 H 1.09000 * 109.58594 * 185.57807 * 20 6 5 44 44 H 0.96998 * 120.00555 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8955 1.0269 0.0000 4 6 2.0436 -0.7279 1.2463 5 6 3.5675 -0.8466 1.1710 6 6 3.9569 -1.6659 -0.0615 7 1 5.0411 -1.7704 -0.1013 8 7 3.3405 -2.9926 0.0184 9 6 3.8970 -4.0345 -0.6306 10 8 4.9100 -3.8733 -1.2826 11 6 3.2752 -5.3732 -0.5494 12 6 3.8432 -6.4638 -1.2195 13 6 3.2220 -7.6954 -1.1118 14 6 2.0705 -7.8090 -0.3534 15 6 1.3906 -9.1486 -0.2342 16 9 1.0119 -9.5941 -1.5052 17 9 2.2735 -10.0702 0.3390 18 7 1.5606 -6.7648 0.2713 19 6 2.1118 -5.5712 0.1950 20 6 3.4650 -0.9487 -1.3226 21 7 2.0225 -0.7011 -1.1937 22 6 1.1536 -1.1154 -2.1676 23 1 0.1395 -1.3817 -1.9088 24 6 1.5763 -1.1932 -3.4875 25 7 2.6873 -0.5932 -3.8592 26 14 0.5686 -2.1494 -4.7362 27 1 -0.7917 -1.5612 -4.8293 28 1 1.2302 -2.0802 -6.0639 29 1 0.4664 -3.5677 -4.3081 30 1 -0.3632 0.5095 0.8926 31 1 -0.3633 0.5182 -0.8874 32 1 -0.3633 -1.0276 -0.0051 33 1 1.6029 -1.7237 1.2934 34 1 1.7661 -0.1642 2.1370 35 1 3.9379 -1.3424 2.0684 36 1 4.0060 0.1487 1.0990 37 1 2.5318 -3.1210 0.5385 38 1 4.7431 -6.3465 -1.8050 39 1 3.6318 -8.5590 -1.6145 40 1 0.5065 -9.0526 0.3960 41 1 1.6622 -4.7394 0.7168 42 1 3.9903 0.0001 -1.4318 43 1 3.6517 -1.5747 -2.1953 44 1 2.9826 -0.6472 -4.7816 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071549027.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:31:12 Heat of formation + Delta-G solvation = -77.780406 kcal Electronic energy + Delta-G solvation = -30314.609347 eV Core-core repulsion = 25903.239235 eV Total energy + Delta-G solvation = -4411.370113 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -49.30678 -47.29149 -40.73156 -39.25123 -37.58577 -34.31126 -32.99482 -32.84499 -32.39001 -30.62248 -29.93691 -27.42919 -26.14634 -25.00562 -24.02162 -23.24693 -22.23448 -21.01722 -20.45501 -18.88147 -18.34734 -17.84985 -17.54487 -17.53583 -16.54233 -16.11297 -15.43828 -15.14073 -15.03948 -14.64984 -14.37524 -14.24149 -14.05489 -13.81291 -13.66448 -13.63689 -13.42121 -13.36093 -13.14298 -12.87737 -12.68478 -12.52143 -11.97829 -11.56941 -11.29843 -11.20778 -11.01846 -10.94465 -10.73858 -10.43822 -10.39341 -10.18068 -10.14410 -10.00682 -9.63356 -9.53957 -9.49002 -9.45999 -8.51638 -8.48612 -6.64198 -5.79186 -3.23727 0.30805 0.96154 2.86870 3.02594 3.35642 3.42218 3.42533 3.43566 3.74667 3.85682 4.12456 4.44509 4.46827 4.61553 4.72347 4.77744 4.89017 5.03758 5.24291 5.27396 5.31901 5.36622 5.44430 5.53581 5.69955 5.87304 5.94235 6.04239 6.09672 6.20245 6.27009 6.30306 6.38256 6.44323 6.53862 6.59553 6.79278 7.00347 7.06262 7.29399 7.42301 7.61370 7.79756 7.89129 8.44937 8.53901 9.19495 9.83737 10.39932 11.28876 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.011316 B = 0.003859 C = 0.003434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2473.798328 B = 7254.037591 C = 8152.131413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.165 3.835 3 H 0.025 0.975 4 C -0.131 4.131 5 C -0.119 4.119 6 C 0.118 3.882 7 H 0.079 0.921 8 N -0.689 5.689 9 C 0.558 3.442 10 O -0.534 6.534 11 C -0.149 4.149 12 C -0.020 4.020 13 C -0.139 4.139 14 C 0.058 3.942 15 C 0.325 3.675 16 F -0.192 7.192 17 F -0.194 7.194 18 N -0.460 5.460 19 C 0.137 3.863 20 C 0.162 3.838 21 N -0.582 5.582 22 C -0.253 4.253 23 H 0.068 0.932 24 C 0.009 3.991 25 N -0.898 5.898 26 Si 0.895 3.105 27 H -0.282 1.282 28 H -0.290 1.290 29 H -0.286 1.286 30 H 0.037 0.963 31 H 0.060 0.940 32 H 0.051 0.949 33 H 0.053 0.947 34 H 0.054 0.946 35 H 0.052 0.948 36 H 0.073 0.927 37 H 0.395 0.605 38 H 0.156 0.844 39 H 0.146 0.854 40 H 0.133 0.867 41 H 0.168 0.832 42 H 0.028 0.972 43 H 0.095 0.905 44 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.406 -10.990 11.649 16.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.058 3.942 3 H 0.043 0.957 4 C -0.170 4.170 5 C -0.157 4.157 6 C 0.012 3.988 7 H 0.097 0.903 8 N -0.339 5.339 9 C 0.343 3.657 10 O -0.412 6.412 11 C -0.154 4.154 12 C -0.046 4.046 13 C -0.159 4.159 14 C -0.080 4.080 15 C 0.271 3.729 16 F -0.173 7.173 17 F -0.175 7.175 18 N -0.169 5.169 19 C -0.022 4.022 20 C 0.036 3.964 21 N -0.306 5.306 22 C -0.383 4.383 23 H 0.085 0.915 24 C -0.191 4.191 25 N -0.542 5.542 26 Si 0.725 3.275 27 H -0.209 1.209 28 H -0.216 1.216 29 H -0.212 1.212 30 H 0.056 0.944 31 H 0.080 0.920 32 H 0.071 0.929 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.071 0.929 36 H 0.091 0.909 37 H 0.230 0.770 38 H 0.174 0.826 39 H 0.164 0.836 40 H 0.150 0.850 41 H 0.185 0.815 42 H 0.046 0.954 43 H 0.113 0.887 44 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -0.361 -10.958 11.482 15.875 hybrid contribution -0.112 -0.445 -1.168 1.255 sum -0.474 -11.403 10.314 15.383 Atomic orbital electron populations 1.21796 0.96070 1.01262 1.00202 1.20470 0.92937 0.93660 0.87121 0.95706 1.22075 0.95075 1.00619 0.99257 1.21700 0.97087 1.00261 0.96670 1.21873 0.97054 0.81277 0.98583 0.90333 1.45785 1.29038 1.08648 1.50466 1.17784 0.84331 0.83517 0.80090 1.90775 1.24963 1.84747 1.40754 1.21356 0.97766 0.95960 1.00300 1.21788 0.98734 0.90350 0.93742 1.21871 0.95736 0.99154 0.99138 1.21606 0.94674 0.94829 0.96903 1.20097 0.91246 0.81525 0.80064 1.93043 1.91637 1.90143 1.42493 1.93028 1.71864 1.68157 1.84458 1.67200 1.31461 0.99027 1.19215 1.22942 0.90986 0.93913 0.94321 1.21174 0.83894 0.97140 0.94240 1.44045 1.02640 1.64690 1.19207 1.19019 0.95019 1.38207 0.86028 0.91484 1.25058 0.97715 0.99318 0.96976 1.69971 1.23900 1.43426 1.16856 0.86502 0.79701 0.80277 0.81067 1.20874 1.21621 1.21231 0.94397 0.92046 0.92945 0.92827 0.92685 0.92905 0.90882 0.76951 0.82643 0.83583 0.84955 0.81509 0.95445 0.88666 0.93570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.35 7.95 37.16 0.30 -2.05 16 2 C 0.16 3.08 3.50 -67.59 -0.24 2.84 16 3 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 4 C -0.13 -1.92 5.21 -26.61 -0.14 -2.06 16 5 C -0.12 -1.73 5.58 -26.69 -0.15 -1.88 16 6 C 0.12 2.09 2.81 -67.81 -0.19 1.90 16 7 H 0.08 1.43 7.58 -51.93 -0.39 1.04 16 8 N -0.69 -11.40 4.87 -54.64 -0.27 -11.67 16 9 C 0.56 9.93 7.75 -12.33 -0.10 9.83 16 10 O -0.53 -11.29 16.08 5.32 0.09 -11.20 16 11 C -0.15 -2.23 5.89 -104.82 -0.62 -2.85 16 12 C -0.02 -0.27 9.72 -38.87 -0.38 -0.64 16 13 C -0.14 -1.66 9.60 -39.50 -0.38 -2.03 16 14 C 0.06 0.71 6.28 -82.51 -0.52 0.19 16 15 C 0.33 3.25 5.54 36.01 0.20 3.45 16 16 F -0.19 -2.17 17.25 2.25 0.04 -2.13 16 17 F -0.19 -2.03 17.25 2.25 0.04 -1.99 16 18 N -0.46 -6.02 10.23 -9.14 -0.09 -6.11 16 19 C 0.14 1.83 10.71 -17.13 -0.18 1.64 16 20 C 0.16 3.69 4.88 -3.71 -0.02 3.67 16 21 N -0.58 -13.24 2.90 -164.77 -0.48 -13.72 16 22 C -0.25 -6.47 8.58 -15.06 -0.13 -6.59 16 23 H 0.07 1.68 6.23 -52.49 -0.33 1.35 16 24 C 0.01 0.24 4.94 -17.43 -0.09 0.15 16 25 N -0.90 -25.82 11.23 55.49 0.62 -25.20 16 26 Si 0.89 21.80 29.58 -169.99 -5.03 16.77 16 27 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 28 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 29 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 30 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.06 1.18 7.67 -51.93 -0.40 0.78 16 32 H 0.05 0.91 7.40 -51.93 -0.38 0.52 16 33 H 0.05 0.76 6.40 -51.93 -0.33 0.43 16 34 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 37 H 0.39 5.68 4.84 -40.82 -0.20 5.48 16 38 H 0.16 2.01 7.74 -52.49 -0.41 1.60 16 39 H 0.15 1.39 8.06 -52.49 -0.42 0.97 16 40 H 0.13 1.00 8.10 -51.93 -0.42 0.58 16 41 H 0.17 1.87 6.42 -52.49 -0.34 1.53 16 42 H 0.03 0.67 8.14 -51.93 -0.42 0.24 16 43 H 0.10 2.58 6.15 -51.93 -0.32 2.26 16 44 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 LS Contribution 363.38 15.07 5.48 5.48 Total: -1.00 -31.14 363.38 -7.84 -38.98 By element: Atomic # 1 Polarization: 10.84 SS G_CDS: -5.61 Total: 5.23 kcal Atomic # 6 Polarization: 8.19 SS G_CDS: -2.62 Total: 5.56 kcal Atomic # 7 Polarization: -56.48 SS G_CDS: -0.21 Total: -56.70 kcal Atomic # 8 Polarization: -11.29 SS G_CDS: 0.09 Total: -11.20 kcal Atomic # 9 Polarization: -4.20 SS G_CDS: 0.08 Total: -4.12 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.03 Total: 16.77 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -31.14 -7.84 -38.98 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071549027.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.803 kcal (2) G-P(sol) polarization free energy of solvation -31.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.978 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds