Wall clock time and date at job start Wed Apr 1 2020 00:31:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08994 * 109.58799 * 2 1 4 4 C 1.53191 * 109.58804 * 120.28756 * 2 1 3 5 5 C 1.53034 * 109.31160 * 174.42003 * 4 2 1 6 6 C 1.53036 * 109.53885 * 298.62753 * 5 4 2 7 7 H 1.09003 * 109.49957 * 181.35211 * 6 5 4 8 8 N 1.46502 * 109.50188 * 301.41759 * 6 5 4 9 9 C 1.34778 * 120.00093 * 205.00043 * 8 6 5 10 10 O 1.21549 * 119.99968 * 359.97438 * 9 8 6 11 11 C 1.47836 * 119.99777 * 179.97438 * 9 8 6 12 12 C 1.40029 * 120.55904 * 179.97438 * 11 9 8 13 13 C 1.38355 * 118.28967 * 180.02562 * 12 11 9 14 14 C 1.38352 * 119.30376 * 0.02562 * 13 12 11 15 15 C 1.50699 * 119.46332 * 179.97438 * 14 13 12 16 16 F 1.39905 * 109.46750 * 300.00307 * 15 14 13 17 17 F 1.39901 * 109.46869 * 59.99451 * 15 14 13 18 18 N 1.31932 * 121.07909 * 359.71634 * 14 13 12 19 19 C 1.31695 * 121.87968 * 0.57121 * 18 14 13 20 20 C 1.53193 * 109.31073 * 61.37158 * 6 5 4 21 21 N 1.46928 * 108.77409 * 305.36145 * 20 6 5 22 22 C 1.36936 * 120.63513 * 233.58919 * 21 20 6 23 23 H 1.07993 * 120.00443 * 150.20206 * 22 21 20 24 24 C 1.38814 * 119.99807 * 330.20182 * 22 21 20 25 25 N 1.31624 * 120.00087 * 344.48423 * 24 22 21 26 26 Si 1.86796 * 120.00164 * 164.48278 * 24 22 21 27 27 H 1.48493 * 109.47223 * 60.00116 * 26 24 22 28 28 H 1.48502 * 109.47440 * 180.02562 * 26 24 22 29 29 H 1.48500 * 109.47171 * 299.99822 * 26 24 22 30 30 H 1.09004 * 109.46471 * 299.71985 * 1 2 3 31 31 H 1.08996 * 109.46876 * 59.71618 * 1 2 3 32 32 H 1.08996 * 109.46854 * 179.71573 * 1 2 3 33 33 H 1.09000 * 109.49630 * 54.46212 * 4 2 1 34 34 H 1.09004 * 109.49273 * 294.36927 * 4 2 1 35 35 H 1.09006 * 109.45823 * 178.61365 * 5 4 2 36 36 H 1.08997 * 109.45166 * 58.65187 * 5 4 2 37 37 H 0.96995 * 119.99639 * 25.00133 * 8 6 5 38 38 H 1.07998 * 120.85164 * 0.04607 * 12 11 9 39 39 H 1.08001 * 120.34658 * 180.02562 * 13 12 11 40 40 H 1.08994 * 109.47484 * 179.97438 * 15 14 13 41 41 H 1.07996 * 119.71909 * 179.70519 * 19 18 14 42 42 H 1.08998 * 109.59046 * 65.14994 * 20 6 5 43 43 H 1.09000 * 109.58594 * 185.57807 * 20 6 5 44 44 H 0.96998 * 120.00555 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8955 1.0269 0.0000 4 6 2.0436 -0.7279 1.2463 5 6 3.5675 -0.8466 1.1710 6 6 3.9569 -1.6659 -0.0615 7 1 5.0411 -1.7704 -0.1013 8 7 3.3405 -2.9926 0.0184 9 6 3.8970 -4.0345 -0.6306 10 8 4.9100 -3.8733 -1.2826 11 6 3.2752 -5.3732 -0.5494 12 6 3.8432 -6.4638 -1.2195 13 6 3.2220 -7.6954 -1.1118 14 6 2.0705 -7.8090 -0.3534 15 6 1.3906 -9.1486 -0.2342 16 9 1.0119 -9.5941 -1.5052 17 9 2.2735 -10.0702 0.3390 18 7 1.5606 -6.7648 0.2713 19 6 2.1118 -5.5712 0.1950 20 6 3.4650 -0.9487 -1.3226 21 7 2.0225 -0.7011 -1.1937 22 6 1.1536 -1.1154 -2.1676 23 1 0.1395 -1.3817 -1.9088 24 6 1.5763 -1.1932 -3.4875 25 7 2.6873 -0.5932 -3.8592 26 14 0.5686 -2.1494 -4.7362 27 1 -0.7917 -1.5612 -4.8293 28 1 1.2302 -2.0802 -6.0639 29 1 0.4664 -3.5677 -4.3081 30 1 -0.3632 0.5095 0.8926 31 1 -0.3633 0.5182 -0.8874 32 1 -0.3633 -1.0276 -0.0051 33 1 1.6029 -1.7237 1.2934 34 1 1.7661 -0.1642 2.1370 35 1 3.9379 -1.3424 2.0684 36 1 4.0060 0.1487 1.0990 37 1 2.5318 -3.1210 0.5385 38 1 4.7431 -6.3465 -1.8050 39 1 3.6318 -8.5590 -1.6145 40 1 0.5065 -9.0526 0.3960 41 1 1.6622 -4.7394 0.7168 42 1 3.9903 0.0001 -1.4318 43 1 3.6517 -1.5747 -2.1953 44 1 2.9826 -0.6472 -4.7816 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071549027.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:31:11 Heat of formation + Delta-G solvation = -97.325170 kcal Electronic energy + Delta-G solvation = -30315.456872 eV Core-core repulsion = 25903.239235 eV Total energy + Delta-G solvation = -4412.217637 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -50.12050 -48.10916 -41.86951 -40.58507 -39.08632 -35.88555 -34.56362 -34.06213 -33.48758 -31.97539 -31.70041 -28.48259 -27.69388 -26.67603 -25.04661 -24.34245 -23.84166 -22.31330 -21.91241 -20.43076 -19.44757 -18.78768 -18.57138 -18.35835 -18.18103 -17.33996 -17.09548 -16.44352 -16.19415 -16.04687 -15.83462 -15.54335 -15.26700 -15.18561 -14.88604 -14.70095 -14.47766 -14.44624 -14.36380 -14.36149 -14.02169 -13.65211 -13.56544 -12.97948 -12.87810 -12.61029 -12.57351 -12.41646 -12.39206 -12.14385 -12.08105 -11.56532 -11.41926 -11.20916 -11.16910 -11.04605 -10.76021 -10.55888 -10.51732 -10.00251 -8.56257 -7.82716 -5.27486 -0.76031 -0.05365 1.39161 1.41973 1.46441 1.64801 2.08346 2.19455 2.48891 2.56463 3.09764 3.22036 3.33374 3.53030 3.57492 3.64464 3.69987 3.83807 3.92186 4.03275 4.10555 4.11879 4.20308 4.36713 4.50096 4.63601 4.68725 4.75973 4.83313 4.85627 4.97977 5.06119 5.08769 5.14925 5.19415 5.29204 5.34052 5.58852 5.61338 5.65347 5.74388 5.74906 6.40466 6.44678 6.54338 7.19236 7.19517 7.93744 8.44207 9.22388 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.011316 B = 0.003859 C = 0.003434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2473.798328 B = 7254.037591 C = 8152.131413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.153 3.847 3 H 0.013 0.987 4 C -0.120 4.120 5 C -0.111 4.111 6 C 0.128 3.872 7 H 0.070 0.930 8 N -0.680 5.680 9 C 0.555 3.445 10 O -0.579 6.579 11 C -0.171 4.171 12 C -0.026 4.026 13 C -0.138 4.138 14 C 0.057 3.943 15 C 0.330 3.670 16 F -0.199 7.199 17 F -0.195 7.195 18 N -0.463 5.463 19 C 0.142 3.858 20 C 0.172 3.828 21 N -0.594 5.594 22 C -0.235 4.235 23 H 0.077 0.923 24 C -0.051 4.051 25 N -0.935 5.935 26 Si 0.944 3.056 27 H -0.271 1.271 28 H -0.304 1.304 29 H -0.286 1.286 30 H 0.075 0.925 31 H 0.032 0.968 32 H 0.053 0.947 33 H 0.065 0.935 34 H 0.091 0.909 35 H 0.088 0.912 36 H 0.074 0.926 37 H 0.407 0.593 38 H 0.153 0.847 39 H 0.169 0.831 40 H 0.164 0.836 41 H 0.188 0.812 42 H -0.002 1.002 43 H 0.046 0.954 44 H 0.242 0.758 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.347 -12.390 14.715 19.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.048 3.952 3 H 0.031 0.969 4 C -0.159 4.159 5 C -0.149 4.149 6 C 0.022 3.978 7 H 0.088 0.912 8 N -0.330 5.330 9 C 0.341 3.659 10 O -0.460 6.460 11 C -0.176 4.176 12 C -0.053 4.053 13 C -0.158 4.158 14 C -0.082 4.082 15 C 0.276 3.724 16 F -0.180 7.180 17 F -0.177 7.177 18 N -0.171 5.171 19 C -0.017 4.017 20 C 0.045 3.955 21 N -0.318 5.318 22 C -0.366 4.366 23 H 0.094 0.906 24 C -0.246 4.246 25 N -0.582 5.582 26 Si 0.774 3.226 27 H -0.197 1.197 28 H -0.231 1.231 29 H -0.213 1.213 30 H 0.094 0.906 31 H 0.051 0.949 32 H 0.072 0.928 33 H 0.084 0.916 34 H 0.110 0.890 35 H 0.107 0.893 36 H 0.092 0.908 37 H 0.246 0.754 38 H 0.171 0.829 39 H 0.187 0.813 40 H 0.181 0.819 41 H 0.205 0.795 42 H 0.016 0.984 43 H 0.064 0.936 44 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -2.356 -12.364 14.608 19.282 hybrid contribution 0.484 -0.007 -2.081 2.137 sum -1.872 -12.372 12.527 17.705 Atomic orbital electron populations 1.21733 0.94752 1.01449 1.00727 1.20780 0.94129 0.93210 0.87055 0.96937 1.21973 0.94666 1.01199 0.98066 1.21680 0.97349 0.99954 0.95898 1.21571 0.96534 0.81908 0.97836 0.91209 1.45665 1.29349 1.07843 1.50185 1.18264 0.83801 0.84741 0.79100 1.90748 1.27015 1.85608 1.42610 1.21202 0.99134 0.94689 1.02546 1.21909 0.98894 0.90898 0.93602 1.22121 0.95584 0.99112 0.98941 1.22095 0.94506 0.95700 0.95889 1.20292 0.91853 0.80146 0.80121 1.93034 1.91652 1.90104 1.43249 1.93029 1.72150 1.68066 1.84407 1.67295 1.31369 0.99007 1.19464 1.23204 0.90103 0.94733 0.93632 1.20848 0.84241 0.95373 0.95086 1.44264 1.02182 1.65384 1.19993 1.19357 0.95398 1.35525 0.86296 0.90590 1.25682 0.98854 1.01177 0.98872 1.70141 1.25878 1.45999 1.16198 0.85682 0.78910 0.79172 0.78817 1.19661 1.23056 1.21264 0.90621 0.94877 0.92784 0.91600 0.89026 0.89318 0.90755 0.75418 0.82914 0.81303 0.81920 0.79483 0.98381 0.93556 0.94863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.11 7.95 71.98 0.57 -3.54 16 2 C 0.15 5.43 3.50 44.98 0.16 5.59 16 3 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 4 C -0.12 -3.04 5.21 30.67 0.16 -2.88 16 5 C -0.11 -2.89 5.58 30.62 0.17 -2.72 16 6 C 0.13 4.50 2.81 45.07 0.13 4.63 16 7 H 0.07 2.60 7.58 -2.39 -0.02 2.58 16 8 N -0.68 -21.89 4.87 -445.05 -2.17 -24.05 16 9 C 0.55 19.94 7.75 86.78 0.67 20.61 16 10 O -0.58 -25.57 16.08 -3.87 -0.06 -25.63 16 11 C -0.17 -5.02 5.89 -19.99 -0.12 -5.13 16 12 C -0.03 -0.71 9.72 22.73 0.22 -0.49 16 13 C -0.14 -3.06 9.60 22.32 0.21 -2.84 16 14 C 0.06 1.24 6.28 42.57 0.27 1.51 16 15 C 0.33 5.62 5.54 71.24 0.39 6.01 16 16 F -0.20 -4.01 17.25 44.97 0.78 -3.23 16 17 F -0.20 -3.55 17.25 44.97 0.78 -2.78 16 18 N -0.46 -10.87 10.23 -182.82 -1.87 -12.74 16 19 C 0.14 3.48 10.71 85.02 0.91 4.39 16 20 C 0.17 8.10 4.88 86.36 0.42 8.52 16 21 N -0.59 -27.11 2.90 -675.21 -1.96 -29.07 16 22 C -0.24 -12.08 8.58 84.03 0.72 -11.36 16 23 H 0.08 3.73 6.23 -2.91 -0.02 3.71 16 24 C -0.05 -2.84 4.94 84.86 0.42 -2.42 16 25 N -0.94 -56.67 11.23 21.65 0.24 -56.43 16 26 Si 0.94 45.89 29.58 68.60 2.03 47.92 16 27 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 28 H -0.30 -15.29 7.11 99.48 0.71 -14.59 16 29 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 30 H 0.07 1.84 8.14 -2.38 -0.02 1.82 16 31 H 0.03 1.22 7.67 -2.39 -0.02 1.20 16 32 H 0.05 1.69 7.40 -2.39 -0.02 1.68 16 33 H 0.07 1.54 6.40 -2.39 -0.02 1.53 16 34 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 35 H 0.09 1.79 8.14 -2.38 -0.02 1.77 16 36 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 37 H 0.41 10.71 4.84 -92.71 -0.45 10.26 16 38 H 0.15 4.08 7.74 -2.91 -0.02 4.06 16 39 H 0.17 2.87 8.06 -2.91 -0.02 2.85 16 40 H 0.16 1.84 8.10 -2.39 -0.02 1.82 16 41 H 0.19 3.62 6.42 -2.91 -0.02 3.60 16 42 H 0.00 -0.09 8.14 -2.39 -0.02 -0.11 16 43 H 0.05 2.65 6.15 -2.39 -0.01 2.64 16 44 H 0.24 14.65 8.31 -92.71 -0.77 13.88 16 Total: -1.00 -71.74 363.38 3.67 -68.07 By element: Atomic # 1 Polarization: 17.47 SS G_CDS: 0.60 Total: 18.07 kcal Atomic # 6 Polarization: 14.57 SS G_CDS: 5.31 Total: 19.88 kcal Atomic # 7 Polarization: -116.54 SS G_CDS: -5.75 Total: -122.29 kcal Atomic # 8 Polarization: -25.57 SS G_CDS: -0.06 Total: -25.63 kcal Atomic # 9 Polarization: -7.56 SS G_CDS: 1.55 Total: -6.01 kcal Atomic # 14 Polarization: 45.89 SS G_CDS: 2.03 Total: 47.92 kcal Total: -71.74 3.67 -68.07 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071549027.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.255 kcal (2) G-P(sol) polarization free energy of solvation -71.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.070 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds