Wall clock time and date at job start Wed Apr 1 2020 00:31:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09005 * 109.58260 * 2 1 4 4 C 1.53191 * 109.58773 * 120.27721 * 2 1 3 5 5 C 1.53042 * 109.31437 * 174.56860 * 4 2 1 6 6 C 1.53047 * 109.53404 * 298.63683 * 5 4 2 7 7 H 1.09001 * 109.49718 * 301.41172 * 6 5 4 8 8 N 1.46501 * 109.49459 * 181.31340 * 6 5 4 9 9 C 1.34781 * 119.99754 * 154.99776 * 8 6 5 10 10 O 1.21549 * 119.99714 * 0.02562 * 9 8 6 11 11 C 1.47834 * 119.99874 * 180.02562 * 9 8 6 12 12 C 1.40026 * 120.56018 * 180.02562 * 11 9 8 13 13 C 1.38351 * 118.28777 * 179.97438 * 12 11 9 14 14 C 1.38350 * 119.30809 * 359.97438 * 13 12 11 15 15 C 1.50697 * 119.46151 * 179.97438 * 14 13 12 16 16 F 1.39893 * 109.47716 * 300.00441 * 15 14 13 17 17 F 1.39898 * 109.46783 * 60.00896 * 15 14 13 18 18 N 1.31923 * 121.07832 * 359.97438 * 14 13 12 19 19 C 1.31701 * 121.87901 * 359.76030 * 18 14 13 20 20 C 1.53189 * 109.31332 * 61.36475 * 6 5 4 21 21 N 1.46920 * 109.58934 * 239.71289 * 2 1 3 22 22 C 1.36940 * 120.63146 * 6.46825 * 21 2 1 23 23 H 1.08008 * 119.99359 * 331.06885 * 22 21 2 24 24 C 1.38810 * 120.00700 * 151.07078 * 22 21 2 25 25 N 1.31615 * 120.00193 * 160.80709 * 24 22 21 26 26 Si 1.86806 * 119.99569 * 340.80720 * 24 22 21 27 27 H 1.48500 * 109.47035 * 92.35132 * 26 24 22 28 28 H 1.48496 * 109.46873 * 212.35381 * 26 24 22 29 29 H 1.48507 * 109.47127 * 332.35620 * 26 24 22 30 30 H 1.09005 * 109.47731 * 299.99915 * 1 2 3 31 31 H 1.09003 * 109.47690 * 60.00161 * 1 2 3 32 32 H 1.08999 * 109.47246 * 180.02562 * 1 2 3 33 33 H 1.09005 * 109.49827 * 294.52087 * 4 2 1 34 34 H 1.09002 * 109.49658 * 54.61666 * 4 2 1 35 35 H 1.08997 * 109.45974 * 58.65498 * 5 4 2 36 36 H 1.08998 * 109.46199 * 178.61865 * 5 4 2 37 37 H 0.96999 * 120.00178 * 335.00896 * 8 6 5 38 38 H 1.07997 * 120.85499 * 359.97438 * 12 11 9 39 39 H 1.08008 * 120.34760 * 180.02562 * 13 12 11 40 40 H 1.09001 * 109.46909 * 180.02562 * 15 14 13 41 41 H 1.08002 * 119.71608 * 180.24314 * 19 18 14 42 42 H 1.09005 * 109.58795 * 65.15337 * 20 6 5 43 43 H 1.08994 * 109.58758 * 185.43527 * 20 6 5 44 44 H 0.97005 * 119.99195 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8953 1.0270 0.0000 4 6 2.0435 -0.7277 1.2464 5 6 3.5678 -0.8431 1.1730 6 6 3.9604 -1.6607 -0.0598 7 1 3.5037 -2.6487 -0.0016 8 7 5.4181 -1.7973 -0.1120 9 6 5.9744 -2.8393 -0.7610 10 8 5.2667 -3.6655 -1.3033 11 6 7.4454 -2.9775 -0.8133 12 6 8.0358 -4.0551 -1.4847 13 6 9.4167 -4.1380 -1.5046 14 6 10.1630 -3.1628 -0.8672 15 6 11.6673 -3.2500 -0.8863 16 9 12.0730 -4.4447 -0.2819 17 9 12.1194 -3.2200 -2.2098 18 7 9.5792 -2.1578 -0.2431 19 6 8.2688 -2.0324 -0.2006 20 6 3.4685 -0.9436 -1.3209 21 7 2.0225 -0.6981 -1.1952 22 6 1.1534 -1.1130 -2.1688 23 1 0.1360 -1.3682 -1.9112 24 6 1.5799 -1.2055 -3.4865 25 7 0.9061 -1.9397 -4.3462 26 14 3.1101 -0.2878 -4.0395 27 1 4.2939 -1.1746 -3.9072 28 1 2.9553 0.1229 -5.4581 29 1 3.2976 0.9176 -3.1926 30 1 -0.3635 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 1.7637 -0.1652 2.1372 34 1 1.6049 -1.7245 1.2923 35 1 4.0045 0.1530 1.1022 36 1 3.9381 -1.3388 2.0704 37 1 5.9828 -1.1379 0.3206 38 1 7.4289 -4.8023 -1.9743 39 1 9.9071 -4.9550 -2.0131 40 1 12.0871 -2.4057 -0.3394 41 1 7.8278 -1.1933 0.3171 42 1 3.9920 0.0065 -1.4288 43 1 3.6599 -1.5673 -2.1941 44 1 1.2040 -2.0040 -5.2672 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071549028.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:31:16 Heat of formation + Delta-G solvation = -73.391908 kcal Electronic energy + Delta-G solvation = -29487.479189 eV Core-core repulsion = 25076.299376 eV Total energy + Delta-G solvation = -4411.179813 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -49.47310 -47.45764 -40.99831 -39.46472 -37.90253 -34.82997 -33.24233 -32.94307 -32.59817 -30.81816 -30.70019 -27.71866 -26.15012 -24.94297 -24.27297 -23.40696 -22.71512 -21.10643 -20.60449 -19.44592 -18.48832 -18.08069 -17.71059 -17.67375 -16.74910 -16.50108 -15.80063 -15.40389 -15.19969 -14.96859 -14.63312 -14.49742 -14.39322 -13.97867 -13.81974 -13.74610 -13.63256 -13.56577 -13.48073 -13.10165 -12.87602 -12.47886 -12.19599 -11.77974 -11.73767 -11.53889 -11.31693 -10.85960 -10.78159 -10.45606 -10.42775 -10.37856 -10.30637 -10.06473 -9.79825 -9.77358 -9.71745 -9.42865 -8.98816 -8.55203 -6.95482 -5.93149 -3.31239 0.03935 0.71518 2.57716 2.81232 3.03401 3.35209 3.42009 3.46922 3.49414 3.68555 3.89866 4.21261 4.33084 4.49759 4.54454 4.54816 4.59495 4.79669 4.91763 5.03232 5.10504 5.16854 5.38544 5.45655 5.47417 5.62755 5.67435 5.85518 5.93367 5.95330 6.05578 6.17807 6.21159 6.30015 6.39622 6.46388 6.50234 6.57402 6.74550 6.96186 7.05738 7.16635 7.48224 7.96768 8.18790 8.36767 8.93578 9.73637 10.09348 11.22396 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.016711 B = 0.002880 C = 0.002622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1675.105286 B = 9720.206545 C =10676.269923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.168 3.832 3 H 0.030 0.970 4 C -0.128 4.128 5 C -0.117 4.117 6 C 0.125 3.875 7 H 0.095 0.905 8 N -0.716 5.716 9 C 0.553 3.447 10 O -0.513 6.513 11 C -0.156 4.156 12 C -0.017 4.017 13 C -0.137 4.137 14 C 0.062 3.938 15 C 0.325 3.675 16 F -0.192 7.192 17 F -0.191 7.191 18 N -0.460 5.460 19 C 0.134 3.866 20 C 0.120 3.880 21 N -0.597 5.597 22 C -0.261 4.261 23 H 0.093 0.907 24 C 0.029 3.971 25 N -0.905 5.905 26 Si 0.878 3.122 27 H -0.289 1.289 28 H -0.303 1.303 29 H -0.271 1.271 30 H 0.040 0.960 31 H 0.064 0.936 32 H 0.058 0.942 33 H 0.061 0.939 34 H 0.066 0.934 35 H 0.061 0.939 36 H 0.058 0.942 37 H 0.394 0.606 38 H 0.159 0.841 39 H 0.149 0.851 40 H 0.134 0.866 41 H 0.169 0.831 42 H 0.025 0.975 43 H 0.079 0.921 44 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.325 0.345 12.304 22.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.062 3.938 3 H 0.048 0.952 4 C -0.167 4.167 5 C -0.155 4.155 6 C 0.020 3.980 7 H 0.113 0.887 8 N -0.368 5.368 9 C 0.337 3.663 10 O -0.389 6.389 11 C -0.161 4.161 12 C -0.043 4.043 13 C -0.156 4.156 14 C -0.077 4.077 15 C 0.270 3.730 16 F -0.173 7.173 17 F -0.172 7.172 18 N -0.169 5.169 19 C -0.025 4.025 20 C -0.007 4.007 21 N -0.321 5.321 22 C -0.389 4.389 23 H 0.111 0.889 24 C -0.170 4.170 25 N -0.548 5.548 26 Si 0.709 3.291 27 H -0.217 1.217 28 H -0.232 1.232 29 H -0.197 1.197 30 H 0.059 0.941 31 H 0.083 0.917 32 H 0.077 0.923 33 H 0.079 0.921 34 H 0.085 0.915 35 H 0.080 0.920 36 H 0.077 0.923 37 H 0.228 0.772 38 H 0.176 0.824 39 H 0.167 0.833 40 H 0.151 0.849 41 H 0.186 0.814 42 H 0.043 0.957 43 H 0.097 0.903 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 18.265 0.291 12.117 21.921 hybrid contribution 0.779 0.082 -0.782 1.107 sum 19.044 0.372 11.335 22.165 Atomic orbital electron populations 1.21814 0.95158 1.02027 1.00478 1.20516 0.93800 0.93372 0.86096 0.95204 1.22053 0.93889 1.01842 0.98943 1.21698 0.97788 0.99597 0.96442 1.21877 0.77153 1.01599 0.97373 0.88705 1.46071 1.08921 1.26392 1.55374 1.17953 0.86512 0.82250 0.79568 1.90879 1.62519 1.41551 1.43920 1.21332 0.95413 0.97856 1.01481 1.21852 0.94176 0.95844 0.92446 1.21927 0.94404 0.99859 0.99456 1.21660 0.95971 0.92980 0.97065 1.20095 0.88386 0.86594 0.77878 1.93038 1.91269 1.49957 1.83058 1.93047 1.89862 1.96849 1.37491 1.67211 1.12500 1.21190 1.15997 1.22946 0.87915 0.97015 0.94669 1.21749 0.85686 0.96949 0.96326 1.44423 1.01458 1.65421 1.20812 1.18902 0.95581 1.38850 0.85587 0.88928 1.25290 0.97317 0.98528 0.95891 1.69812 1.41168 1.39129 1.04682 0.87001 0.83866 0.81202 0.77026 1.21664 1.23153 1.19654 0.94076 0.91687 0.92329 0.92055 0.91525 0.91997 0.92284 0.77163 0.82372 0.83304 0.84896 0.81415 0.95743 0.90310 0.92770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.43 7.94 37.16 0.30 -2.13 16 2 C 0.17 3.12 3.49 -67.61 -0.24 2.88 16 3 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 4 C -0.13 -1.91 5.37 -26.61 -0.14 -2.05 16 5 C -0.12 -1.59 5.35 -26.68 -0.14 -1.73 16 6 C 0.13 2.14 2.61 -67.81 -0.18 1.96 16 7 H 0.09 1.88 7.58 -51.93 -0.39 1.49 16 8 N -0.72 -9.99 5.03 -54.63 -0.28 -10.26 16 9 C 0.55 8.69 7.75 -12.33 -0.10 8.60 16 10 O -0.51 -10.49 16.08 5.32 0.09 -10.40 16 11 C -0.16 -1.93 5.89 -104.82 -0.62 -2.54 16 12 C -0.02 -0.19 9.72 -38.87 -0.38 -0.57 16 13 C -0.14 -1.34 9.60 -39.50 -0.38 -1.72 16 14 C 0.06 0.61 6.28 -82.51 -0.52 0.09 16 15 C 0.33 2.62 5.53 36.00 0.20 2.82 16 16 F -0.19 -1.72 17.25 2.25 0.04 -1.68 16 17 F -0.19 -1.79 17.25 2.25 0.04 -1.75 16 18 N -0.46 -4.78 10.23 -9.14 -0.09 -4.87 16 19 C 0.13 1.35 10.71 -17.13 -0.18 1.17 16 20 C 0.12 2.59 3.78 -3.56 -0.01 2.58 16 21 N -0.60 -13.77 2.76 -164.56 -0.45 -14.23 16 22 C -0.26 -7.16 9.05 -15.06 -0.14 -7.30 16 23 H 0.09 2.66 6.39 -52.48 -0.34 2.33 16 24 C 0.03 0.85 5.25 -17.43 -0.09 0.76 16 25 N -0.91 -28.12 13.97 55.49 0.78 -27.35 16 26 Si 0.88 22.93 24.35 -169.99 -4.14 18.79 16 27 H -0.29 -7.57 6.62 56.52 0.37 -7.20 16 28 H -0.30 -8.04 7.11 56.52 0.40 -7.64 16 29 H -0.27 -6.83 6.62 56.52 0.37 -6.46 16 30 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.06 1.26 7.64 -51.93 -0.40 0.87 16 32 H 0.06 1.10 7.42 -51.93 -0.39 0.71 16 33 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 34 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 35 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 37 H 0.39 3.89 6.67 -40.82 -0.27 3.61 16 38 H 0.16 1.79 7.74 -52.49 -0.41 1.39 16 39 H 0.15 1.15 8.06 -52.48 -0.42 0.73 16 40 H 0.13 0.74 8.10 -51.93 -0.42 0.32 16 41 H 0.17 1.18 6.42 -52.49 -0.34 0.85 16 42 H 0.02 0.52 7.04 -51.93 -0.37 0.16 16 43 H 0.08 2.01 4.62 -51.93 -0.24 1.77 16 44 H 0.26 7.80 8.31 -40.82 -0.34 7.46 16 LS Contribution 360.45 15.07 5.43 5.43 Total: -1.00 -34.38 360.45 -6.91 -41.29 By element: Atomic # 1 Polarization: 7.94 SS G_CDS: -5.70 Total: 2.24 kcal Atomic # 6 Polarization: 5.41 SS G_CDS: -2.62 Total: 2.80 kcal Atomic # 7 Polarization: -56.66 SS G_CDS: -0.05 Total: -56.71 kcal Atomic # 8 Polarization: -10.49 SS G_CDS: 0.09 Total: -10.40 kcal Atomic # 9 Polarization: -3.51 SS G_CDS: 0.08 Total: -3.43 kcal Atomic # 14 Polarization: 22.93 SS G_CDS: -4.14 Total: 18.79 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -34.38 -6.91 -41.29 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071549028.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.097 kcal (2) G-P(sol) polarization free energy of solvation -34.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.295 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds