Wall clock time and date at job start Wed Apr 1 2020 00:31:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09005 * 109.58260 * 2 1 4 4 C 1.53191 * 109.58773 * 120.27721 * 2 1 3 5 5 C 1.53042 * 109.31437 * 174.56860 * 4 2 1 6 6 C 1.53047 * 109.53404 * 298.63683 * 5 4 2 7 7 H 1.09001 * 109.49718 * 301.41172 * 6 5 4 8 8 N 1.46501 * 109.49459 * 181.31340 * 6 5 4 9 9 C 1.34781 * 119.99754 * 154.99776 * 8 6 5 10 10 O 1.21549 * 119.99714 * 0.02562 * 9 8 6 11 11 C 1.47834 * 119.99874 * 180.02562 * 9 8 6 12 12 C 1.40026 * 120.56018 * 180.02562 * 11 9 8 13 13 C 1.38351 * 118.28777 * 179.97438 * 12 11 9 14 14 C 1.38350 * 119.30809 * 359.97438 * 13 12 11 15 15 C 1.50697 * 119.46151 * 179.97438 * 14 13 12 16 16 F 1.39893 * 109.47716 * 300.00441 * 15 14 13 17 17 F 1.39898 * 109.46783 * 60.00896 * 15 14 13 18 18 N 1.31923 * 121.07832 * 359.97438 * 14 13 12 19 19 C 1.31701 * 121.87901 * 359.76030 * 18 14 13 20 20 C 1.53189 * 109.31332 * 61.36475 * 6 5 4 21 21 N 1.46920 * 109.58934 * 239.71289 * 2 1 3 22 22 C 1.36940 * 120.63146 * 6.46825 * 21 2 1 23 23 H 1.08008 * 119.99359 * 331.06885 * 22 21 2 24 24 C 1.38810 * 120.00700 * 151.07078 * 22 21 2 25 25 N 1.31615 * 120.00193 * 160.80709 * 24 22 21 26 26 Si 1.86806 * 119.99569 * 340.80720 * 24 22 21 27 27 H 1.48500 * 109.47035 * 92.35132 * 26 24 22 28 28 H 1.48496 * 109.46873 * 212.35381 * 26 24 22 29 29 H 1.48507 * 109.47127 * 332.35620 * 26 24 22 30 30 H 1.09005 * 109.47731 * 299.99915 * 1 2 3 31 31 H 1.09003 * 109.47690 * 60.00161 * 1 2 3 32 32 H 1.08999 * 109.47246 * 180.02562 * 1 2 3 33 33 H 1.09005 * 109.49827 * 294.52087 * 4 2 1 34 34 H 1.09002 * 109.49658 * 54.61666 * 4 2 1 35 35 H 1.08997 * 109.45974 * 58.65498 * 5 4 2 36 36 H 1.08998 * 109.46199 * 178.61865 * 5 4 2 37 37 H 0.96999 * 120.00178 * 335.00896 * 8 6 5 38 38 H 1.07997 * 120.85499 * 359.97438 * 12 11 9 39 39 H 1.08008 * 120.34760 * 180.02562 * 13 12 11 40 40 H 1.09001 * 109.46909 * 180.02562 * 15 14 13 41 41 H 1.08002 * 119.71608 * 180.24314 * 19 18 14 42 42 H 1.09005 * 109.58795 * 65.15337 * 20 6 5 43 43 H 1.08994 * 109.58758 * 185.43527 * 20 6 5 44 44 H 0.97005 * 119.99195 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8953 1.0270 0.0000 4 6 2.0435 -0.7277 1.2464 5 6 3.5678 -0.8431 1.1730 6 6 3.9604 -1.6607 -0.0598 7 1 3.5037 -2.6487 -0.0016 8 7 5.4181 -1.7973 -0.1120 9 6 5.9744 -2.8393 -0.7610 10 8 5.2667 -3.6655 -1.3033 11 6 7.4454 -2.9775 -0.8133 12 6 8.0358 -4.0551 -1.4847 13 6 9.4167 -4.1380 -1.5046 14 6 10.1630 -3.1628 -0.8672 15 6 11.6673 -3.2500 -0.8863 16 9 12.0730 -4.4447 -0.2819 17 9 12.1194 -3.2200 -2.2098 18 7 9.5792 -2.1578 -0.2431 19 6 8.2688 -2.0324 -0.2006 20 6 3.4685 -0.9436 -1.3209 21 7 2.0225 -0.6981 -1.1952 22 6 1.1534 -1.1130 -2.1688 23 1 0.1360 -1.3682 -1.9112 24 6 1.5799 -1.2055 -3.4865 25 7 0.9061 -1.9397 -4.3462 26 14 3.1101 -0.2878 -4.0395 27 1 4.2939 -1.1746 -3.9072 28 1 2.9553 0.1229 -5.4581 29 1 3.2976 0.9176 -3.1926 30 1 -0.3635 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 1.7637 -0.1652 2.1372 34 1 1.6049 -1.7245 1.2923 35 1 4.0045 0.1530 1.1022 36 1 3.9381 -1.3388 2.0704 37 1 5.9828 -1.1379 0.3206 38 1 7.4289 -4.8023 -1.9743 39 1 9.9071 -4.9550 -2.0131 40 1 12.0871 -2.4057 -0.3394 41 1 7.8278 -1.1933 0.3171 42 1 3.9920 0.0065 -1.4288 43 1 3.6599 -1.5673 -2.1941 44 1 1.2040 -2.0040 -5.2672 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071549028.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:31:15 Heat of formation + Delta-G solvation = -98.202705 kcal Electronic energy + Delta-G solvation = -29488.555066 eV Core-core repulsion = 25076.299376 eV Total energy + Delta-G solvation = -4412.255690 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -50.13701 -48.12842 -41.96270 -40.66293 -39.36077 -36.27188 -34.71690 -34.13952 -33.54556 -32.59321 -32.05254 -28.65138 -27.66989 -26.55575 -25.09800 -24.67126 -24.00852 -22.37116 -21.88084 -20.99779 -19.42009 -18.81880 -18.63077 -18.48732 -18.37367 -17.69307 -17.25534 -16.57705 -16.44440 -16.19020 -16.11427 -15.62689 -15.33484 -15.23592 -15.08299 -14.79725 -14.65163 -14.58154 -14.49296 -14.39200 -14.32379 -13.81201 -13.60383 -13.44556 -13.03835 -12.72722 -12.54056 -12.51243 -12.41645 -12.09097 -11.79473 -11.72398 -11.56827 -11.35310 -11.27144 -11.25989 -10.82694 -10.79695 -10.61896 -10.23983 -8.87757 -8.17503 -5.48892 -0.84435 -0.10378 1.23750 1.29556 1.39072 1.51640 1.85723 2.12642 2.39054 2.45844 3.03265 3.09240 3.18350 3.30650 3.44907 3.52948 3.62268 3.77303 3.81331 3.89958 4.02202 4.06747 4.10428 4.26430 4.32927 4.38636 4.59507 4.63414 4.67340 4.78264 4.82627 4.86954 4.96805 5.01443 5.10258 5.13370 5.17225 5.25683 5.35066 5.51472 5.65055 5.89967 6.17639 6.33188 6.39357 6.91778 7.05198 7.64054 8.03069 9.02275 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.016711 B = 0.002880 C = 0.002622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1675.105286 B = 9720.206545 C =10676.269923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.156 3.844 3 H 0.048 0.952 4 C -0.121 4.121 5 C -0.108 4.108 6 C 0.136 3.864 7 H 0.059 0.941 8 N -0.699 5.699 9 C 0.552 3.448 10 O -0.573 6.573 11 C -0.174 4.174 12 C -0.026 4.026 13 C -0.138 4.138 14 C 0.062 3.938 15 C 0.328 3.672 16 F -0.197 7.197 17 F -0.199 7.199 18 N -0.462 5.462 19 C 0.147 3.853 20 C 0.117 3.883 21 N -0.613 5.613 22 C -0.234 4.234 23 H 0.067 0.933 24 C -0.037 4.037 25 N -0.959 5.959 26 Si 0.939 3.061 27 H -0.298 1.298 28 H -0.313 1.313 29 H -0.250 1.250 30 H 0.084 0.916 31 H 0.037 0.963 32 H 0.036 0.964 33 H 0.104 0.896 34 H 0.048 0.952 35 H 0.089 0.911 36 H 0.093 0.907 37 H 0.418 0.582 38 H 0.149 0.851 39 H 0.167 0.833 40 H 0.166 0.834 41 H 0.202 0.798 42 H 0.038 0.962 43 H 0.033 0.967 44 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.240 2.794 15.773 26.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.052 3.948 3 H 0.066 0.934 4 C -0.160 4.160 5 C -0.145 4.145 6 C 0.030 3.970 7 H 0.077 0.923 8 N -0.352 5.352 9 C 0.339 3.661 10 O -0.453 6.453 11 C -0.179 4.179 12 C -0.053 4.053 13 C -0.158 4.158 14 C -0.076 4.076 15 C 0.274 3.726 16 F -0.178 7.178 17 F -0.180 7.180 18 N -0.170 5.170 19 C -0.012 4.012 20 C -0.009 4.009 21 N -0.339 5.339 22 C -0.364 4.364 23 H 0.085 0.915 24 C -0.232 4.232 25 N -0.606 5.606 26 Si 0.770 3.230 27 H -0.226 1.226 28 H -0.242 1.242 29 H -0.174 1.174 30 H 0.103 0.897 31 H 0.056 0.944 32 H 0.055 0.945 33 H 0.122 0.878 34 H 0.067 0.933 35 H 0.108 0.892 36 H 0.112 0.888 37 H 0.257 0.743 38 H 0.167 0.833 39 H 0.184 0.816 40 H 0.183 0.817 41 H 0.219 0.781 42 H 0.056 0.944 43 H 0.051 0.949 44 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 21.238 2.805 15.672 26.543 hybrid contribution -0.137 -0.725 -1.765 1.913 sum 21.101 2.080 13.907 25.358 Atomic orbital electron populations 1.21767 0.95096 1.00877 1.01282 1.20902 0.94116 0.94199 0.85587 0.93410 1.21976 0.94752 1.00946 0.98342 1.21699 0.96846 1.00594 0.95404 1.21462 0.78626 0.99855 0.97075 0.92284 1.45809 1.07959 1.26559 1.54852 1.18476 0.87771 0.81606 0.78294 1.90857 1.64189 1.43772 1.46465 1.21108 0.93394 0.99556 1.03836 1.21917 0.95070 0.95758 0.92539 1.22113 0.93577 1.00595 0.99514 1.22080 0.97152 0.92443 0.95943 1.20340 0.87201 0.87295 0.77760 1.93033 1.91170 1.50527 1.83085 1.93036 1.89798 1.96892 1.38276 1.67338 1.12305 1.21213 1.16165 1.23381 0.87624 0.96809 0.93408 1.21702 0.85155 0.97026 0.97026 1.44619 1.01615 1.66375 1.21275 1.18911 0.95237 1.35781 0.86433 0.91492 1.25904 1.00491 1.00274 0.96489 1.69947 1.43759 1.42030 1.04853 0.86003 0.80427 0.80380 0.76177 1.22633 1.24171 1.17392 0.89722 0.94384 0.94481 0.87807 0.93323 0.89230 0.88831 0.74271 0.83348 0.81557 0.81744 0.78099 0.94396 0.94902 0.93373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.55 7.94 71.98 0.57 -3.97 16 2 C 0.16 5.40 3.49 44.97 0.16 5.56 16 3 H 0.05 1.54 8.14 -2.38 -0.02 1.52 16 4 C -0.12 -3.14 5.37 30.67 0.16 -2.97 16 5 C -0.11 -2.41 5.35 30.62 0.16 -2.25 16 6 C 0.14 4.43 2.61 45.07 0.12 4.55 16 7 H 0.06 2.38 7.58 -2.39 -0.02 2.36 16 8 N -0.70 -17.96 5.03 -445.03 -2.24 -20.20 16 9 C 0.55 17.24 7.75 86.78 0.67 17.91 16 10 O -0.57 -24.61 16.08 -3.87 -0.06 -24.67 16 11 C -0.17 -4.10 5.89 -19.99 -0.12 -4.22 16 12 C -0.03 -0.60 9.72 22.73 0.22 -0.38 16 13 C -0.14 -2.53 9.60 22.32 0.21 -2.32 16 14 C 0.06 1.07 6.28 42.57 0.27 1.34 16 15 C 0.33 4.34 5.53 71.24 0.39 4.74 16 16 F -0.20 -3.05 17.25 44.97 0.78 -2.27 16 17 F -0.20 -3.26 17.25 44.97 0.78 -2.48 16 18 N -0.46 -8.05 10.23 -182.82 -1.87 -9.92 16 19 C 0.15 2.51 10.71 85.02 0.91 3.42 16 20 C 0.12 4.99 3.78 86.31 0.33 5.32 16 21 N -0.61 -28.19 2.76 -674.54 -1.86 -30.05 16 22 C -0.23 -13.30 9.05 84.03 0.76 -12.54 16 23 H 0.07 4.08 6.39 -2.91 -0.02 4.06 16 24 C -0.04 -2.28 5.25 84.86 0.45 -1.83 16 25 N -0.96 -63.07 13.97 21.65 0.30 -62.76 16 26 Si 0.94 49.33 24.35 68.60 1.67 51.00 16 27 H -0.30 -15.89 6.62 99.48 0.66 -15.24 16 28 H -0.31 -16.65 7.11 99.48 0.71 -15.95 16 29 H -0.25 -12.01 6.62 99.48 0.66 -11.35 16 30 H 0.08 2.14 8.14 -2.38 -0.02 2.12 16 31 H 0.04 1.47 7.64 -2.39 -0.02 1.45 16 32 H 0.04 1.39 7.42 -2.39 -0.02 1.38 16 33 H 0.10 1.91 8.14 -2.38 -0.02 1.89 16 34 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 35 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 36 H 0.09 1.57 8.14 -2.39 -0.02 1.56 16 37 H 0.42 6.46 6.67 -92.71 -0.62 5.84 16 38 H 0.15 3.60 7.74 -2.91 -0.02 3.58 16 39 H 0.17 2.35 8.06 -2.91 -0.02 2.33 16 40 H 0.17 1.19 8.10 -2.39 -0.02 1.17 16 41 H 0.20 1.86 6.42 -2.91 -0.02 1.84 16 42 H 0.04 1.51 7.04 -2.38 -0.02 1.49 16 43 H 0.03 1.71 4.62 -2.39 -0.01 1.70 16 44 H 0.26 16.28 8.31 -92.70 -0.77 15.51 16 Total: -1.00 -81.82 360.45 3.09 -78.73 By element: Atomic # 1 Polarization: 9.95 SS G_CDS: 0.33 Total: 10.28 kcal Atomic # 6 Polarization: 7.08 SS G_CDS: 5.27 Total: 12.35 kcal Atomic # 7 Polarization: -117.26 SS G_CDS: -5.67 Total: -122.93 kcal Atomic # 8 Polarization: -24.61 SS G_CDS: -0.06 Total: -24.67 kcal Atomic # 9 Polarization: -6.31 SS G_CDS: 1.55 Total: -4.75 kcal Atomic # 14 Polarization: 49.33 SS G_CDS: 1.67 Total: 51.00 kcal Total: -81.82 3.09 -78.73 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071549028.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.474 kcal (2) G-P(sol) polarization free energy of solvation -81.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds