Wall clock time and date at job start Wed Apr 1 2020 00:31:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.70238 * 2 1 4 4 C 1.53188 * 109.58700 * 239.64316 * 2 1 3 5 5 C 1.53104 * 109.33227 * 185.57944 * 4 2 1 6 6 C 1.53035 * 109.50364 * 61.34505 * 5 4 2 7 7 H 1.08992 * 109.50143 * 178.68481 * 6 5 4 8 8 N 1.46505 * 109.49785 * 58.61893 * 6 5 4 9 9 C 1.34779 * 119.99846 * 155.06737 * 8 6 5 10 10 O 1.21548 * 119.99912 * 359.97438 * 9 8 6 11 11 C 1.47844 * 119.99833 * 180.02562 * 9 8 6 12 12 C 1.40024 * 120.55979 * 180.27080 * 11 9 8 13 13 C 1.38354 * 118.28593 * 180.23946 * 12 11 9 14 14 C 1.38350 * 119.30401 * 359.46877 * 13 12 11 15 15 C 1.50702 * 119.45701 * 180.27408 * 14 13 12 16 16 F 1.39904 * 109.47277 * 299.99551 * 15 14 13 17 17 F 1.39895 * 109.47237 * 60.00052 * 15 14 13 18 18 N 1.31925 * 121.07889 * 0.29761 * 14 13 12 19 19 C 1.31693 * 121.88281 * 359.97438 * 18 14 13 20 20 C 1.53197 * 109.34159 * 298.65466 * 6 5 4 21 21 N 1.46928 * 109.58249 * 120.35527 * 2 1 3 22 22 C 1.36933 * 120.63494 * 353.42437 * 21 2 1 23 23 H 1.08004 * 120.00421 * 28.99582 * 22 21 2 24 24 C 1.38813 * 120.00102 * 209.00526 * 22 21 2 25 25 N 1.31625 * 119.99717 * 15.01175 * 24 22 21 26 26 Si 1.86795 * 120.00224 * 195.01280 * 24 22 21 27 27 H 1.48498 * 109.47190 * 59.99694 * 26 24 22 28 28 H 1.48504 * 109.47228 * 179.97438 * 26 24 22 29 29 H 1.48500 * 109.47409 * 299.99969 * 26 24 22 30 30 H 1.08997 * 109.47655 * 299.64642 * 1 2 3 31 31 H 1.09007 * 109.47200 * 59.64255 * 1 2 3 32 32 H 1.08998 * 109.47655 * 179.64381 * 1 2 3 33 33 H 1.09003 * 109.50187 * 305.53719 * 4 2 1 34 34 H 1.09001 * 109.49464 * 65.59580 * 4 2 1 35 35 H 1.08997 * 109.44869 * 301.35338 * 5 4 2 36 36 H 1.09000 * 109.50444 * 181.36849 * 5 4 2 37 37 H 0.96998 * 120.00043 * 335.07021 * 8 6 5 38 38 H 1.08001 * 120.85286 * 359.97438 * 12 11 9 39 39 H 1.08003 * 120.34444 * 179.74219 * 13 12 11 40 40 H 1.09004 * 109.47079 * 179.97438 * 15 14 13 41 41 H 1.08000 * 119.71604 * 179.97438 * 19 18 14 42 42 H 1.08990 * 109.59062 * 174.43868 * 20 6 5 43 43 H 1.08998 * 109.58183 * 294.72149 * 20 6 5 44 44 H 0.96998 * 119.99549 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0435 -0.7294 -1.2454 5 6 3.5681 -0.8483 -1.1705 6 6 3.9568 -1.6658 0.0635 7 1 5.0410 -1.7702 0.1040 8 7 3.3404 -2.9925 -0.0148 9 6 3.8958 -4.0332 0.6371 10 8 4.9084 -3.8710 1.2897 11 6 3.2740 -5.3722 0.5577 12 6 3.8379 -6.4603 1.2349 13 6 3.2201 -7.6932 1.1239 14 6 2.0698 -7.8082 0.3639 15 6 1.3905 -9.1483 0.2457 16 9 2.2743 -10.0705 -0.3248 17 9 1.0098 -9.5918 1.5167 18 7 1.5581 -6.7641 -0.2594 19 6 2.1123 -5.5715 -0.1888 20 6 3.4649 -0.9471 1.3238 21 7 2.0224 -0.6996 1.1945 22 6 1.1535 -1.1136 2.1685 23 1 0.1358 -1.3682 1.9117 24 6 1.5806 -1.2060 3.4861 25 7 2.7037 -0.6277 3.8559 26 14 0.5616 -2.1510 4.7342 27 1 0.4323 -3.5649 4.2990 28 1 1.2303 -2.1006 6.0592 29 1 -0.7877 -1.5393 4.8366 30 1 -0.3634 0.5083 0.8931 31 1 -0.3634 0.5194 -0.8868 32 1 -0.3634 -1.0276 -0.0064 33 1 1.6029 -1.7253 -1.2914 34 1 1.7655 -0.1671 -2.1368 35 1 4.0067 0.1470 -1.0996 36 1 3.9388 -1.3454 -2.0669 37 1 2.5326 -3.1220 -0.5359 38 1 4.7345 -6.3411 1.8251 39 1 3.6290 -8.5559 1.6289 40 1 0.5067 -9.0532 -0.3852 41 1 1.6639 -4.7409 -0.7136 42 1 3.6517 -1.5719 2.1971 43 1 3.9921 0.0007 1.4331 44 1 3.0020 -0.6920 4.7766 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071549029.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:31:20 Heat of formation + Delta-G solvation = -77.374252 kcal Electronic energy + Delta-G solvation = -30322.518495 eV Core-core repulsion = 25911.165994 eV Total energy + Delta-G solvation = -4411.352501 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -49.30566 -47.29077 -40.72877 -39.24691 -37.58251 -34.30974 -32.99207 -32.84707 -32.38955 -30.62127 -29.92272 -27.42620 -26.14578 -25.01120 -24.01892 -23.24389 -22.23031 -21.01434 -20.45367 -18.87854 -18.34422 -17.84782 -17.54326 -17.53265 -16.54140 -16.11374 -15.43881 -15.13732 -15.03356 -14.64883 -14.37237 -14.24001 -14.05169 -13.80935 -13.66277 -13.63410 -13.42148 -13.35872 -13.14069 -12.87280 -12.68219 -12.51989 -11.97442 -11.56718 -11.29625 -11.21029 -11.00958 -10.94305 -10.73510 -10.43968 -10.39556 -10.17675 -10.14095 -10.00099 -9.63277 -9.53363 -9.48681 -9.45862 -8.51225 -8.48532 -6.65001 -5.78686 -3.22929 0.31141 0.96459 2.87336 3.02777 3.35688 3.42372 3.42839 3.43573 3.75112 3.85844 4.12684 4.44716 4.46874 4.61912 4.72583 4.78040 4.89361 5.04056 5.24428 5.27667 5.32066 5.36795 5.44542 5.53938 5.70247 5.87627 5.94313 6.04284 6.09696 6.20529 6.27056 6.29919 6.38268 6.44556 6.53831 6.59901 6.79542 6.99970 7.06061 7.30103 7.42605 7.63598 7.79453 7.89898 8.44986 8.54469 9.19763 9.84065 10.39660 11.29224 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.011316 B = 0.003865 C = 0.003440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2473.815304 B = 7242.664578 C = 8138.655289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.165 3.835 3 H 0.026 0.974 4 C -0.131 4.131 5 C -0.119 4.119 6 C 0.118 3.882 7 H 0.078 0.922 8 N -0.689 5.689 9 C 0.558 3.442 10 O -0.534 6.534 11 C -0.149 4.149 12 C -0.020 4.020 13 C -0.139 4.139 14 C 0.058 3.942 15 C 0.325 3.675 16 F -0.194 7.194 17 F -0.192 7.192 18 N -0.460 5.460 19 C 0.137 3.863 20 C 0.161 3.839 21 N -0.583 5.583 22 C -0.252 4.252 23 H 0.068 0.932 24 C 0.008 3.992 25 N -0.899 5.899 26 Si 0.895 3.105 27 H -0.286 1.286 28 H -0.290 1.290 29 H -0.283 1.283 30 H 0.061 0.939 31 H 0.037 0.963 32 H 0.051 0.949 33 H 0.053 0.947 34 H 0.054 0.946 35 H 0.072 0.928 36 H 0.052 0.948 37 H 0.394 0.606 38 H 0.156 0.844 39 H 0.146 0.854 40 H 0.133 0.867 41 H 0.168 0.832 42 H 0.098 0.902 43 H 0.027 0.973 44 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.444 -10.925 -11.626 15.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.058 3.942 3 H 0.043 0.957 4 C -0.170 4.170 5 C -0.157 4.157 6 C 0.012 3.988 7 H 0.096 0.904 8 N -0.339 5.339 9 C 0.343 3.657 10 O -0.412 6.412 11 C -0.154 4.154 12 C -0.046 4.046 13 C -0.159 4.159 14 C -0.080 4.080 15 C 0.271 3.729 16 F -0.175 7.175 17 F -0.173 7.173 18 N -0.169 5.169 19 C -0.022 4.022 20 C 0.034 3.966 21 N -0.306 5.306 22 C -0.382 4.382 23 H 0.086 0.914 24 C -0.192 4.192 25 N -0.543 5.543 26 Si 0.725 3.275 27 H -0.212 1.212 28 H -0.216 1.216 29 H -0.209 1.209 30 H 0.080 0.920 31 H 0.056 0.944 32 H 0.070 0.930 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.091 0.909 36 H 0.071 0.929 37 H 0.230 0.770 38 H 0.174 0.826 39 H 0.164 0.836 40 H 0.150 0.850 41 H 0.185 0.815 42 H 0.116 0.884 43 H 0.045 0.955 44 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -0.403 -10.894 -11.453 15.812 hybrid contribution -0.119 -0.441 1.160 1.247 sum -0.522 -11.335 -10.293 15.320 Atomic orbital electron populations 1.21797 0.96063 1.01215 1.00274 1.20467 0.92924 0.93677 0.87117 0.95687 1.22087 0.95074 1.00614 0.99249 1.21711 0.97070 1.00268 0.96676 1.21875 0.97049 0.81284 0.98581 0.90352 1.45787 1.29129 1.08704 1.50319 1.17784 0.84327 0.83511 0.80100 1.90775 1.24974 1.84703 1.40768 1.21358 0.97801 0.95978 1.00236 1.21787 0.98688 0.90352 0.93784 1.21871 0.95790 0.99131 0.99111 1.21602 0.94651 0.94819 0.96944 1.20097 0.91209 0.81530 0.80100 1.93028 1.71797 1.68108 1.84567 1.93040 1.91578 1.90199 1.42504 1.67195 1.31431 0.99050 1.19230 1.22940 0.90939 0.93915 0.94372 1.21197 0.83808 0.97199 0.94363 1.44051 1.02664 1.64783 1.19121 1.19036 0.94656 1.38287 0.86185 0.91434 1.25042 0.97641 0.99534 0.96946 1.69965 1.23128 1.44183 1.16979 0.86493 0.79725 0.80203 0.81072 1.21248 1.21619 1.20889 0.92012 0.94383 0.92965 0.92833 0.92691 0.90892 0.92903 0.76966 0.82643 0.83586 0.84959 0.81513 0.88403 0.95498 0.93576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.35 7.94 37.16 0.30 -2.05 16 2 C 0.16 3.07 3.50 -67.60 -0.24 2.84 16 3 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 4 C -0.13 -1.93 5.21 -26.58 -0.14 -2.06 16 5 C -0.12 -1.74 5.59 -26.66 -0.15 -1.88 16 6 C 0.12 2.09 2.81 -67.81 -0.19 1.90 16 7 H 0.08 1.43 7.58 -51.93 -0.39 1.04 16 8 N -0.69 -11.43 4.87 -54.63 -0.27 -11.70 16 9 C 0.56 9.96 7.75 -12.33 -0.10 9.86 16 10 O -0.53 -11.31 16.08 5.32 0.09 -11.23 16 11 C -0.15 -2.23 5.89 -104.82 -0.62 -2.85 16 12 C -0.02 -0.27 9.72 -38.87 -0.38 -0.64 16 13 C -0.14 -1.66 9.60 -39.50 -0.38 -2.04 16 14 C 0.06 0.71 6.28 -82.51 -0.52 0.19 16 15 C 0.33 3.26 5.54 36.01 0.20 3.45 16 16 F -0.19 -2.03 17.25 2.25 0.04 -1.99 16 17 F -0.19 -2.18 17.25 2.25 0.04 -2.14 16 18 N -0.46 -6.03 10.23 -9.14 -0.09 -6.13 16 19 C 0.14 1.83 10.71 -17.13 -0.18 1.65 16 20 C 0.16 3.66 4.89 -3.71 -0.02 3.64 16 21 N -0.58 -13.25 2.91 -164.78 -0.48 -13.73 16 22 C -0.25 -6.44 8.60 -15.06 -0.13 -6.57 16 23 H 0.07 1.69 6.21 -52.48 -0.33 1.36 16 24 C 0.01 0.21 4.96 -17.43 -0.09 0.12 16 25 N -0.90 -25.83 11.14 55.49 0.62 -25.21 16 26 Si 0.89 21.81 29.58 -169.99 -5.03 16.78 16 27 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 28 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 29 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 30 H 0.06 1.19 7.62 -51.93 -0.40 0.79 16 31 H 0.04 0.54 8.14 -51.92 -0.42 0.12 16 32 H 0.05 0.90 7.44 -51.93 -0.39 0.51 16 33 H 0.05 0.76 6.40 -51.93 -0.33 0.43 16 34 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 36 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.39 5.69 4.84 -40.82 -0.20 5.49 16 38 H 0.16 2.02 7.74 -52.49 -0.41 1.61 16 39 H 0.15 1.40 8.06 -52.48 -0.42 0.97 16 40 H 0.13 1.00 8.10 -51.93 -0.42 0.58 16 41 H 0.17 1.87 6.42 -52.49 -0.34 1.53 16 42 H 0.10 2.65 6.06 -51.93 -0.31 2.34 16 43 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 LS Contribution 363.23 15.07 5.47 5.47 Total: -1.00 -31.13 363.23 -7.84 -38.97 By element: Atomic # 1 Polarization: 10.94 SS G_CDS: -5.60 Total: 5.34 kcal Atomic # 6 Polarization: 8.19 SS G_CDS: -2.63 Total: 5.56 kcal Atomic # 7 Polarization: -56.54 SS G_CDS: -0.22 Total: -56.77 kcal Atomic # 8 Polarization: -11.31 SS G_CDS: 0.09 Total: -11.23 kcal Atomic # 9 Polarization: -4.21 SS G_CDS: 0.08 Total: -4.13 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.03 Total: 16.78 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -31.13 -7.84 -38.97 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071549029.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.407 kcal (2) G-P(sol) polarization free energy of solvation -31.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds