Wall clock time and date at job start Wed Apr 1 2020 00:31:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.70238 * 2 1 4 4 C 1.53188 * 109.58700 * 239.64316 * 2 1 3 5 5 C 1.53104 * 109.33227 * 185.57944 * 4 2 1 6 6 C 1.53035 * 109.50364 * 61.34505 * 5 4 2 7 7 H 1.08992 * 109.50143 * 178.68481 * 6 5 4 8 8 N 1.46505 * 109.49785 * 58.61893 * 6 5 4 9 9 C 1.34779 * 119.99846 * 155.06737 * 8 6 5 10 10 O 1.21548 * 119.99912 * 359.97438 * 9 8 6 11 11 C 1.47844 * 119.99833 * 180.02562 * 9 8 6 12 12 C 1.40024 * 120.55979 * 180.27080 * 11 9 8 13 13 C 1.38354 * 118.28593 * 180.23946 * 12 11 9 14 14 C 1.38350 * 119.30401 * 359.46877 * 13 12 11 15 15 C 1.50702 * 119.45701 * 180.27408 * 14 13 12 16 16 F 1.39904 * 109.47277 * 299.99551 * 15 14 13 17 17 F 1.39895 * 109.47237 * 60.00052 * 15 14 13 18 18 N 1.31925 * 121.07889 * 0.29761 * 14 13 12 19 19 C 1.31693 * 121.88281 * 359.97438 * 18 14 13 20 20 C 1.53197 * 109.34159 * 298.65466 * 6 5 4 21 21 N 1.46928 * 109.58249 * 120.35527 * 2 1 3 22 22 C 1.36933 * 120.63494 * 353.42437 * 21 2 1 23 23 H 1.08004 * 120.00421 * 28.99582 * 22 21 2 24 24 C 1.38813 * 120.00102 * 209.00526 * 22 21 2 25 25 N 1.31625 * 119.99717 * 15.01175 * 24 22 21 26 26 Si 1.86795 * 120.00224 * 195.01280 * 24 22 21 27 27 H 1.48498 * 109.47190 * 59.99694 * 26 24 22 28 28 H 1.48504 * 109.47228 * 179.97438 * 26 24 22 29 29 H 1.48500 * 109.47409 * 299.99969 * 26 24 22 30 30 H 1.08997 * 109.47655 * 299.64642 * 1 2 3 31 31 H 1.09007 * 109.47200 * 59.64255 * 1 2 3 32 32 H 1.08998 * 109.47655 * 179.64381 * 1 2 3 33 33 H 1.09003 * 109.50187 * 305.53719 * 4 2 1 34 34 H 1.09001 * 109.49464 * 65.59580 * 4 2 1 35 35 H 1.08997 * 109.44869 * 301.35338 * 5 4 2 36 36 H 1.09000 * 109.50444 * 181.36849 * 5 4 2 37 37 H 0.96998 * 120.00043 * 335.07021 * 8 6 5 38 38 H 1.08001 * 120.85286 * 359.97438 * 12 11 9 39 39 H 1.08003 * 120.34444 * 179.74219 * 13 12 11 40 40 H 1.09004 * 109.47079 * 179.97438 * 15 14 13 41 41 H 1.08000 * 119.71604 * 179.97438 * 19 18 14 42 42 H 1.08990 * 109.59062 * 174.43868 * 20 6 5 43 43 H 1.08998 * 109.58183 * 294.72149 * 20 6 5 44 44 H 0.96998 * 119.99549 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0435 -0.7294 -1.2454 5 6 3.5681 -0.8483 -1.1705 6 6 3.9568 -1.6658 0.0635 7 1 5.0410 -1.7702 0.1040 8 7 3.3404 -2.9925 -0.0148 9 6 3.8958 -4.0332 0.6371 10 8 4.9084 -3.8710 1.2897 11 6 3.2740 -5.3722 0.5577 12 6 3.8379 -6.4603 1.2349 13 6 3.2201 -7.6932 1.1239 14 6 2.0698 -7.8082 0.3639 15 6 1.3905 -9.1483 0.2457 16 9 2.2743 -10.0705 -0.3248 17 9 1.0098 -9.5918 1.5167 18 7 1.5581 -6.7641 -0.2594 19 6 2.1123 -5.5715 -0.1888 20 6 3.4649 -0.9471 1.3238 21 7 2.0224 -0.6996 1.1945 22 6 1.1535 -1.1136 2.1685 23 1 0.1358 -1.3682 1.9117 24 6 1.5806 -1.2060 3.4861 25 7 2.7037 -0.6277 3.8559 26 14 0.5616 -2.1510 4.7342 27 1 0.4323 -3.5649 4.2990 28 1 1.2303 -2.1006 6.0592 29 1 -0.7877 -1.5393 4.8366 30 1 -0.3634 0.5083 0.8931 31 1 -0.3634 0.5194 -0.8868 32 1 -0.3634 -1.0276 -0.0064 33 1 1.6029 -1.7253 -1.2914 34 1 1.7655 -0.1671 -2.1368 35 1 4.0067 0.1470 -1.0996 36 1 3.9388 -1.3454 -2.0669 37 1 2.5326 -3.1220 -0.5359 38 1 4.7345 -6.3411 1.8251 39 1 3.6290 -8.5559 1.6289 40 1 0.5067 -9.0532 -0.3852 41 1 1.6639 -4.7409 -0.7136 42 1 3.6517 -1.5719 2.1971 43 1 3.9921 0.0007 1.4331 44 1 3.0020 -0.6920 4.7766 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071549029.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:31:19 Heat of formation + Delta-G solvation = -96.903391 kcal Electronic energy + Delta-G solvation = -30323.365342 eV Core-core repulsion = 25911.165994 eV Total energy + Delta-G solvation = -4412.199348 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -50.12097 -48.10994 -41.86905 -40.58364 -39.08480 -35.88538 -34.56620 -34.06248 -33.48820 -31.97436 -31.68643 -28.48122 -27.69396 -26.67978 -25.04660 -24.34071 -23.83846 -22.31296 -21.91167 -20.42894 -19.44657 -18.78763 -18.57046 -18.35865 -18.18234 -17.34058 -17.09672 -16.43974 -16.19391 -16.04405 -15.83222 -15.54064 -15.26578 -15.18556 -14.88609 -14.70087 -14.47785 -14.44445 -14.36302 -14.35973 -14.01975 -13.64665 -13.56434 -12.98476 -12.87198 -12.60504 -12.57165 -12.41063 -12.39034 -12.13874 -12.08228 -11.56588 -11.41812 -11.20744 -11.17062 -11.04489 -10.75996 -10.55881 -10.51371 -10.00096 -8.56871 -7.82168 -5.26558 -0.75957 -0.05361 1.39306 1.42002 1.46571 1.65012 2.08488 2.19468 2.49068 2.56551 3.09778 3.22027 3.33850 3.53129 3.57490 3.64584 3.70055 3.83844 3.92256 4.03486 4.10572 4.11821 4.20450 4.36673 4.50293 4.63661 4.68737 4.75929 4.83409 4.85664 4.98145 5.06147 5.08905 5.14795 5.19419 5.29067 5.34224 5.58800 5.61499 5.66269 5.74133 5.76648 6.40513 6.44772 6.54549 7.19458 7.19739 7.94166 8.44053 9.22816 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.011316 B = 0.003865 C = 0.003440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2473.815304 B = 7242.664578 C = 8138.655289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.153 3.847 3 H 0.013 0.987 4 C -0.120 4.120 5 C -0.111 4.111 6 C 0.127 3.873 7 H 0.069 0.931 8 N -0.680 5.680 9 C 0.554 3.446 10 O -0.579 6.579 11 C -0.171 4.171 12 C -0.027 4.027 13 C -0.138 4.138 14 C 0.057 3.943 15 C 0.330 3.670 16 F -0.195 7.195 17 F -0.199 7.199 18 N -0.463 5.463 19 C 0.142 3.858 20 C 0.170 3.830 21 N -0.595 5.595 22 C -0.234 4.234 23 H 0.077 0.923 24 C -0.052 4.052 25 N -0.936 5.936 26 Si 0.945 3.055 27 H -0.286 1.286 28 H -0.304 1.304 29 H -0.271 1.271 30 H 0.032 0.968 31 H 0.075 0.925 32 H 0.053 0.947 33 H 0.065 0.935 34 H 0.091 0.909 35 H 0.074 0.926 36 H 0.088 0.912 37 H 0.407 0.593 38 H 0.153 0.847 39 H 0.169 0.831 40 H 0.164 0.836 41 H 0.188 0.812 42 H 0.049 0.951 43 H -0.002 1.002 44 H 0.242 0.758 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.406 -12.313 -14.693 19.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.048 3.952 3 H 0.031 0.969 4 C -0.159 4.159 5 C -0.149 4.149 6 C 0.021 3.979 7 H 0.087 0.913 8 N -0.330 5.330 9 C 0.341 3.659 10 O -0.460 6.460 11 C -0.176 4.176 12 C -0.053 4.053 13 C -0.158 4.158 14 C -0.082 4.082 15 C 0.276 3.724 16 F -0.176 7.176 17 F -0.180 7.180 18 N -0.171 5.171 19 C -0.017 4.017 20 C 0.043 3.957 21 N -0.319 5.319 22 C -0.365 4.365 23 H 0.095 0.905 24 C -0.247 4.247 25 N -0.583 5.583 26 Si 0.775 3.225 27 H -0.213 1.213 28 H -0.231 1.231 29 H -0.197 1.197 30 H 0.052 0.948 31 H 0.094 0.906 32 H 0.072 0.928 33 H 0.084 0.916 34 H 0.110 0.890 35 H 0.092 0.908 36 H 0.107 0.893 37 H 0.246 0.754 38 H 0.171 0.829 39 H 0.187 0.813 40 H 0.181 0.819 41 H 0.205 0.795 42 H 0.067 0.933 43 H 0.016 0.984 44 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -2.418 -12.287 -14.580 19.219 hybrid contribution 0.484 -0.006 2.073 2.129 sum -1.934 -12.293 -12.507 17.643 Atomic orbital electron populations 1.21734 0.94728 1.01469 1.00754 1.20780 0.94129 0.93231 0.87031 0.96904 1.21985 0.94653 1.01189 0.98081 1.21691 0.97346 0.99964 0.95882 1.21572 0.96514 0.81911 0.97861 0.91255 1.45666 1.29437 1.07896 1.50039 1.18266 0.83797 0.84740 0.79112 1.90748 1.27032 1.85569 1.42626 1.21203 0.99175 0.94703 1.02481 1.21908 0.98845 0.90912 0.93650 1.22120 0.95639 0.99079 0.98920 1.22093 0.94481 0.95695 0.95917 1.20292 0.91816 0.80144 0.80160 1.93030 1.72084 1.68015 1.84513 1.93031 1.91593 1.90159 1.43262 1.67290 1.31337 0.99030 1.19481 1.23203 0.90048 0.94733 0.93687 1.20871 0.84169 0.95437 0.95217 1.44271 1.02200 1.65466 1.19917 1.19377 0.95068 1.35589 0.86440 0.90518 1.25667 0.98773 1.01411 0.98846 1.70141 1.25076 1.46750 1.16311 0.85673 0.78889 0.79141 0.78819 1.21260 1.23079 1.19691 0.94834 0.90625 0.92766 0.91614 0.89031 0.90763 0.89331 0.75427 0.82932 0.81306 0.81915 0.79481 0.93255 0.98442 0.94892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.11 7.94 71.98 0.57 -3.54 16 2 C 0.15 5.43 3.50 44.97 0.16 5.59 16 3 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 4 C -0.12 -3.04 5.21 30.69 0.16 -2.88 16 5 C -0.11 -2.90 5.59 30.64 0.17 -2.73 16 6 C 0.13 4.51 2.81 45.07 0.13 4.64 16 7 H 0.07 2.59 7.58 -2.39 -0.02 2.57 16 8 N -0.68 -21.95 4.87 -445.04 -2.17 -24.11 16 9 C 0.55 20.00 7.75 86.79 0.67 20.67 16 10 O -0.58 -25.64 16.08 -3.87 -0.06 -25.70 16 11 C -0.17 -5.03 5.89 -19.99 -0.12 -5.15 16 12 C -0.03 -0.72 9.72 22.73 0.22 -0.50 16 13 C -0.14 -3.07 9.60 22.32 0.21 -2.85 16 14 C 0.06 1.25 6.28 42.57 0.27 1.51 16 15 C 0.33 5.63 5.54 71.24 0.39 6.02 16 16 F -0.20 -3.56 17.25 44.97 0.78 -2.78 16 17 F -0.20 -4.02 17.25 44.97 0.78 -3.24 16 18 N -0.46 -10.90 10.23 -182.82 -1.87 -12.77 16 19 C 0.14 3.49 10.71 85.02 0.91 4.40 16 20 C 0.17 8.04 4.89 86.36 0.42 8.46 16 21 N -0.59 -27.12 2.91 -675.23 -1.96 -29.09 16 22 C -0.23 -12.02 8.60 84.03 0.72 -11.30 16 23 H 0.08 3.76 6.21 -2.91 -0.02 3.74 16 24 C -0.05 -2.91 4.96 84.86 0.42 -2.49 16 25 N -0.94 -56.68 11.14 21.65 0.24 -56.44 16 26 Si 0.94 45.90 29.58 68.60 2.03 47.93 16 27 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 28 H -0.30 -15.31 7.11 99.48 0.71 -14.60 16 29 H -0.27 -12.51 7.11 99.48 0.71 -11.81 16 30 H 0.03 1.23 7.62 -2.39 -0.02 1.21 16 31 H 0.07 1.84 8.14 -2.38 -0.02 1.82 16 32 H 0.05 1.69 7.44 -2.39 -0.02 1.67 16 33 H 0.07 1.54 6.40 -2.39 -0.02 1.52 16 34 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 35 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 36 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 37 H 0.41 10.74 4.84 -92.71 -0.45 10.29 16 38 H 0.15 4.10 7.74 -2.91 -0.02 4.08 16 39 H 0.17 2.88 8.06 -2.91 -0.02 2.86 16 40 H 0.16 1.84 8.10 -2.38 -0.02 1.83 16 41 H 0.19 3.63 6.42 -2.91 -0.02 3.61 16 42 H 0.05 2.83 6.06 -2.39 -0.01 2.82 16 43 H 0.00 -0.12 8.14 -2.39 -0.02 -0.14 16 44 H 0.24 14.64 8.31 -92.71 -0.77 13.87 16 Total: -1.00 -71.71 363.23 3.67 -68.04 By element: Atomic # 1 Polarization: 17.70 SS G_CDS: 0.60 Total: 18.30 kcal Atomic # 6 Polarization: 14.55 SS G_CDS: 5.31 Total: 19.86 kcal Atomic # 7 Polarization: -116.64 SS G_CDS: -5.76 Total: -122.40 kcal Atomic # 8 Polarization: -25.64 SS G_CDS: -0.06 Total: -25.70 kcal Atomic # 9 Polarization: -7.57 SS G_CDS: 1.55 Total: -6.02 kcal Atomic # 14 Polarization: 45.90 SS G_CDS: 2.03 Total: 47.93 kcal Total: -71.71 3.67 -68.04 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071549029.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.863 kcal (2) G-P(sol) polarization free energy of solvation -71.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds