Wall clock time and date at job start Wed Apr 1 2020 00:31:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09003 * 109.57670 * 2 1 4 4 C 1.53188 * 109.58521 * 239.71658 * 2 1 3 5 5 C 1.53038 * 109.31093 * 185.57515 * 4 2 1 6 6 C 1.53040 * 109.53951 * 61.36129 * 5 4 2 7 7 H 1.09003 * 109.49627 * 58.62318 * 6 5 4 8 8 N 1.46504 * 109.50253 * 178.68398 * 6 5 4 9 9 C 1.34772 * 120.00315 * 204.93767 * 8 6 5 10 10 O 1.21551 * 119.99985 * 359.97438 * 9 8 6 11 11 C 1.47840 * 119.99815 * 179.97438 * 9 8 6 12 12 C 1.40035 * 120.55750 * 180.27622 * 11 9 8 13 13 C 1.38351 * 118.28665 * 180.24212 * 12 11 9 14 14 C 1.38349 * 119.30380 * 359.46353 * 13 12 11 15 15 C 1.50707 * 119.46041 * 180.27575 * 14 13 12 16 16 F 1.39903 * 109.46893 * 299.99885 * 15 14 13 17 17 F 1.39897 * 109.47013 * 60.00160 * 15 14 13 18 18 N 1.31927 * 121.08051 * 0.30213 * 14 13 12 19 19 C 1.31689 * 121.88139 * 359.97243 * 18 14 13 20 20 C 1.53190 * 109.34287 * 298.65320 * 6 5 4 21 21 N 1.46926 * 109.58720 * 120.42137 * 2 1 3 22 22 C 1.36937 * 120.62972 * 353.40482 * 21 2 1 23 23 H 1.08001 * 120.00429 * 29.01234 * 22 21 2 24 24 C 1.38815 * 119.99694 * 209.01775 * 22 21 2 25 25 N 1.31615 * 120.00035 * 15.00952 * 24 22 21 26 26 Si 1.86797 * 120.00002 * 195.01491 * 24 22 21 27 27 H 1.48503 * 109.47312 * 89.99482 * 26 24 22 28 28 H 1.48494 * 109.47358 * 209.99676 * 26 24 22 29 29 H 1.48501 * 109.47256 * 329.99877 * 26 24 22 30 30 H 1.09008 * 109.46804 * 180.28564 * 1 2 3 31 31 H 1.09001 * 109.47345 * 300.28230 * 1 2 3 32 32 H 1.08999 * 109.47256 * 60.28856 * 1 2 3 33 33 H 1.08994 * 109.50106 * 65.62417 * 4 2 1 34 34 H 1.09000 * 109.49650 * 305.52254 * 4 2 1 35 35 H 1.09005 * 109.46226 * 301.34553 * 5 4 2 36 36 H 1.09000 * 109.45424 * 181.37750 * 5 4 2 37 37 H 0.97002 * 119.99335 * 24.93360 * 8 6 5 38 38 H 1.08001 * 120.85434 * 359.97438 * 12 11 9 39 39 H 1.07997 * 120.34380 * 179.73685 * 13 12 11 40 40 H 1.09003 * 109.47097 * 180.02562 * 15 14 13 41 41 H 1.07995 * 119.71942 * 180.02562 * 19 18 14 42 42 H 1.08997 * 109.58902 * 174.40282 * 20 6 5 43 43 H 1.08998 * 109.59002 * 294.82926 * 20 6 5 44 44 H 0.97003 * 120.00018 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8953 1.0270 0.0000 4 6 2.0436 -0.7278 -1.2463 5 6 3.5675 -0.8464 -1.1712 6 6 3.9570 -1.6656 0.0614 7 1 3.4989 -2.6529 0.0017 8 7 5.4144 -1.8052 0.1154 9 6 5.9678 -2.8481 0.7653 10 8 5.2579 -3.6726 1.3073 11 6 7.4385 -2.9892 0.8192 12 6 8.0259 -4.0712 1.4864 13 6 9.4067 -4.1544 1.5120 14 6 10.1556 -3.1815 0.8742 15 6 11.6598 -3.2720 0.8945 16 9 12.1109 -3.2418 2.2184 17 9 12.0631 -4.4682 0.2915 18 7 9.5745 -2.1756 0.2489 19 6 8.2645 -2.0497 0.2013 20 6 3.4651 -0.9492 1.3230 21 7 2.0226 -0.7009 1.1937 22 6 1.1537 -1.1157 2.1674 23 1 0.1360 -1.3700 1.9104 24 6 1.5810 -1.2093 3.4848 25 7 2.7042 -0.6316 3.8550 26 14 0.5620 -2.1554 4.7322 27 1 0.9961 -3.5754 4.7512 28 1 0.7527 -1.5614 6.0798 29 1 -0.8730 -2.0815 4.3573 30 1 -0.3633 -1.0277 0.0051 31 1 -0.3634 0.5182 0.8874 32 1 -0.3634 0.5093 -0.8925 33 1 1.7660 -0.1642 -2.1370 34 1 1.6030 -1.7237 -1.2934 35 1 4.0061 0.1489 -1.0991 36 1 3.9377 -1.3423 -2.0685 37 1 5.9809 -1.1471 -0.3169 38 1 7.4168 -4.8192 1.9722 39 1 9.8947 -4.9726 2.0207 40 1 12.0819 -2.4287 0.3478 41 1 7.8257 -1.2124 -0.3208 42 1 3.6518 -1.5755 2.1952 43 1 3.9902 -0.0003 1.4327 44 1 3.0029 -0.6973 4.7755 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071549030.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:31:23 Heat of formation + Delta-G solvation = -79.081954 kcal Electronic energy + Delta-G solvation = -29349.173841 eV Core-core repulsion = 24937.747289 eV Total energy + Delta-G solvation = -4411.426552 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -49.40348 -47.38906 -40.86457 -39.24201 -37.63008 -34.62730 -33.12407 -32.91353 -32.50398 -30.66252 -29.87347 -27.59426 -25.94680 -24.99384 -24.16150 -23.23660 -22.29693 -21.00234 -20.29531 -19.39125 -18.35850 -17.98938 -17.64174 -17.49785 -16.63715 -16.32743 -15.50672 -15.28334 -15.08938 -14.80302 -14.44266 -14.32144 -13.94059 -13.83147 -13.75575 -13.71136 -13.50153 -13.40872 -13.38342 -12.81526 -12.77693 -12.42816 -11.92514 -11.67068 -11.51152 -11.16398 -10.91664 -10.74626 -10.60791 -10.44352 -10.33187 -10.28183 -10.27012 -9.98179 -9.81604 -9.64986 -9.51818 -9.50221 -8.67547 -8.44696 -6.65096 -5.76564 -3.21266 0.15825 0.81995 2.72237 2.90364 3.22830 3.41625 3.47757 3.48700 3.57269 3.75663 3.99514 4.31061 4.45349 4.51169 4.61832 4.63532 4.73353 4.90154 5.14856 5.28573 5.32576 5.42339 5.52234 5.57813 5.61935 5.74912 5.91390 6.04470 6.05984 6.22540 6.25472 6.35079 6.40372 6.43218 6.58447 6.66752 6.80189 7.00934 7.09231 7.25780 7.27550 7.69008 7.71090 7.84437 8.37510 8.47778 9.21846 9.86008 10.40693 11.31467 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.015442 B = 0.002742 C = 0.002446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1812.753245 B =10209.942726 C =11443.006353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.165 3.835 3 H 0.025 0.975 4 C -0.126 4.126 5 C -0.117 4.117 6 C 0.116 3.884 7 H 0.085 0.915 8 N -0.710 5.710 9 C 0.555 3.445 10 O -0.519 6.519 11 C -0.152 4.152 12 C -0.018 4.018 13 C -0.137 4.137 14 C 0.060 3.940 15 C 0.325 3.675 16 F -0.192 7.192 17 F -0.193 7.193 18 N -0.461 5.461 19 C 0.134 3.866 20 C 0.167 3.833 21 N -0.583 5.583 22 C -0.253 4.253 23 H 0.071 0.929 24 C 0.006 3.994 25 N -0.901 5.901 26 Si 0.901 3.099 27 H -0.286 1.286 28 H -0.292 1.292 29 H -0.279 1.279 30 H 0.053 0.947 31 H 0.061 0.939 32 H 0.038 0.962 33 H 0.056 0.944 34 H 0.061 0.939 35 H 0.060 0.940 36 H 0.052 0.948 37 H 0.392 0.608 38 H 0.157 0.843 39 H 0.148 0.852 40 H 0.133 0.867 41 H 0.169 0.831 42 H 0.096 0.904 43 H 0.018 0.982 44 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.599 -2.507 -10.541 18.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.058 3.942 3 H 0.043 0.957 4 C -0.166 4.166 5 C -0.155 4.155 6 C 0.011 3.989 7 H 0.103 0.897 8 N -0.361 5.361 9 C 0.339 3.661 10 O -0.394 6.394 11 C -0.157 4.157 12 C -0.045 4.045 13 C -0.157 4.157 14 C -0.079 4.079 15 C 0.270 3.730 16 F -0.173 7.173 17 F -0.174 7.174 18 N -0.169 5.169 19 C -0.025 4.025 20 C 0.040 3.960 21 N -0.306 5.306 22 C -0.383 4.383 23 H 0.089 0.911 24 C -0.193 4.193 25 N -0.545 5.545 26 Si 0.731 3.269 27 H -0.213 1.213 28 H -0.218 1.218 29 H -0.204 1.204 30 H 0.072 0.928 31 H 0.080 0.920 32 H 0.057 0.943 33 H 0.074 0.926 34 H 0.080 0.920 35 H 0.078 0.922 36 H 0.070 0.930 37 H 0.226 0.774 38 H 0.175 0.825 39 H 0.165 0.835 40 H 0.151 0.849 41 H 0.186 0.814 42 H 0.114 0.886 43 H 0.036 0.964 44 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 14.642 -2.484 -10.359 18.108 hybrid contribution -0.562 -0.811 1.015 1.416 sum 14.080 -3.296 -9.344 17.217 Atomic orbital electron populations 1.21806 0.95955 1.01458 1.00201 1.20495 0.93126 0.93565 0.87011 0.95694 1.22046 0.94159 1.01395 0.98985 1.21689 0.97580 0.99658 0.96577 1.22106 0.76981 1.01198 0.98640 0.89730 1.46021 1.09080 1.26054 1.54919 1.17869 0.86311 0.82319 0.79608 1.90849 1.62372 1.41983 1.44242 1.21374 0.95651 0.97588 1.01072 1.21831 0.94125 0.95889 0.92607 1.21903 0.94425 0.99896 0.99500 1.21629 0.95880 0.93076 0.97282 1.20101 0.88532 0.86474 0.77851 1.93045 1.89910 1.96843 1.37495 1.93035 1.91357 1.49876 1.83136 1.67202 1.12673 1.20986 1.16079 1.22949 0.87832 0.97069 0.94691 1.21102 0.83667 0.96991 0.94215 1.44022 1.02594 1.64596 1.19414 1.19162 0.94728 1.38230 0.86140 0.91114 1.25077 0.97745 0.99426 0.97033 1.69990 1.23331 1.44293 1.16888 0.86314 0.79752 0.80034 0.80811 1.21328 1.21808 1.20419 0.92763 0.92004 0.94316 0.92572 0.92020 0.92150 0.92965 0.77408 0.82500 0.83457 0.84934 0.81410 0.88596 0.96416 0.93715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.49 7.94 37.16 0.30 -2.20 16 2 C 0.16 3.25 3.50 -67.60 -0.24 3.02 16 3 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 4 C -0.13 -2.04 5.37 -26.61 -0.14 -2.18 16 5 C -0.12 -1.76 5.35 -26.69 -0.14 -1.90 16 6 C 0.12 2.12 2.60 -67.81 -0.18 1.94 16 7 H 0.08 1.77 7.58 -51.93 -0.39 1.38 16 8 N -0.71 -10.67 5.03 -54.63 -0.28 -10.95 16 9 C 0.55 9.14 7.75 -12.33 -0.10 9.04 16 10 O -0.52 -10.89 16.08 5.32 0.09 -10.80 16 11 C -0.15 -1.97 5.89 -104.82 -0.62 -2.59 16 12 C -0.02 -0.22 9.72 -38.87 -0.38 -0.59 16 13 C -0.14 -1.42 9.60 -39.50 -0.38 -1.80 16 14 C 0.06 0.63 6.28 -82.51 -0.52 0.11 16 15 C 0.33 2.78 5.54 36.01 0.20 2.98 16 16 F -0.19 -1.88 17.25 2.25 0.04 -1.84 16 17 F -0.19 -1.81 17.25 2.25 0.04 -1.77 16 18 N -0.46 -5.08 10.23 -9.14 -0.09 -5.18 16 19 C 0.13 1.45 10.71 -17.13 -0.18 1.27 16 20 C 0.17 3.90 4.86 -3.71 -0.02 3.88 16 21 N -0.58 -14.11 2.99 -164.77 -0.49 -14.60 16 22 C -0.25 -6.80 8.61 -15.06 -0.13 -6.93 16 23 H 0.07 1.85 6.20 -52.49 -0.33 1.53 16 24 C 0.01 0.17 4.96 -17.43 -0.09 0.08 16 25 N -0.90 -26.29 11.14 55.49 0.62 -25.67 16 26 Si 0.90 22.13 29.58 -169.99 -5.03 17.10 16 27 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 28 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 29 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 30 H 0.05 1.01 7.40 -51.92 -0.38 0.63 16 31 H 0.06 1.22 7.66 -51.93 -0.40 0.83 16 32 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 33 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 34 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 35 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 36 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.39 4.40 6.67 -40.82 -0.27 4.12 16 38 H 0.16 1.85 7.74 -52.49 -0.41 1.44 16 39 H 0.15 1.21 8.06 -52.49 -0.42 0.79 16 40 H 0.13 0.80 8.10 -51.93 -0.42 0.38 16 41 H 0.17 1.35 6.42 -52.49 -0.34 1.01 16 42 H 0.10 2.66 6.06 -51.93 -0.31 2.35 16 43 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 LS Contribution 366.75 15.07 5.53 5.53 Total: -1.00 -32.65 366.75 -7.96 -40.61 By element: Atomic # 1 Polarization: 9.22 SS G_CDS: -5.77 Total: 3.45 kcal Atomic # 6 Polarization: 6.74 SS G_CDS: -2.61 Total: 4.13 kcal Atomic # 7 Polarization: -56.15 SS G_CDS: -0.24 Total: -56.40 kcal Atomic # 8 Polarization: -10.89 SS G_CDS: 0.09 Total: -10.80 kcal Atomic # 9 Polarization: -3.69 SS G_CDS: 0.08 Total: -3.61 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.03 Total: 17.10 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -32.65 -7.96 -40.61 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071549030.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.476 kcal (2) G-P(sol) polarization free energy of solvation -32.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds