Wall clock time and date at job start Wed Apr 1 2020 00:31:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09003 * 109.57670 * 2 1 4 4 C 1.53188 * 109.58521 * 239.71658 * 2 1 3 5 5 C 1.53038 * 109.31093 * 185.57515 * 4 2 1 6 6 C 1.53040 * 109.53951 * 61.36129 * 5 4 2 7 7 H 1.09003 * 109.49627 * 58.62318 * 6 5 4 8 8 N 1.46504 * 109.50253 * 178.68398 * 6 5 4 9 9 C 1.34772 * 120.00315 * 204.93767 * 8 6 5 10 10 O 1.21551 * 119.99985 * 359.97438 * 9 8 6 11 11 C 1.47840 * 119.99815 * 179.97438 * 9 8 6 12 12 C 1.40035 * 120.55750 * 180.27622 * 11 9 8 13 13 C 1.38351 * 118.28665 * 180.24212 * 12 11 9 14 14 C 1.38349 * 119.30380 * 359.46353 * 13 12 11 15 15 C 1.50707 * 119.46041 * 180.27575 * 14 13 12 16 16 F 1.39903 * 109.46893 * 299.99885 * 15 14 13 17 17 F 1.39897 * 109.47013 * 60.00160 * 15 14 13 18 18 N 1.31927 * 121.08051 * 0.30213 * 14 13 12 19 19 C 1.31689 * 121.88139 * 359.97243 * 18 14 13 20 20 C 1.53190 * 109.34287 * 298.65320 * 6 5 4 21 21 N 1.46926 * 109.58720 * 120.42137 * 2 1 3 22 22 C 1.36937 * 120.62972 * 353.40482 * 21 2 1 23 23 H 1.08001 * 120.00429 * 29.01234 * 22 21 2 24 24 C 1.38815 * 119.99694 * 209.01775 * 22 21 2 25 25 N 1.31615 * 120.00035 * 15.00952 * 24 22 21 26 26 Si 1.86797 * 120.00002 * 195.01491 * 24 22 21 27 27 H 1.48503 * 109.47312 * 89.99482 * 26 24 22 28 28 H 1.48494 * 109.47358 * 209.99676 * 26 24 22 29 29 H 1.48501 * 109.47256 * 329.99877 * 26 24 22 30 30 H 1.09008 * 109.46804 * 180.28564 * 1 2 3 31 31 H 1.09001 * 109.47345 * 300.28230 * 1 2 3 32 32 H 1.08999 * 109.47256 * 60.28856 * 1 2 3 33 33 H 1.08994 * 109.50106 * 65.62417 * 4 2 1 34 34 H 1.09000 * 109.49650 * 305.52254 * 4 2 1 35 35 H 1.09005 * 109.46226 * 301.34553 * 5 4 2 36 36 H 1.09000 * 109.45424 * 181.37750 * 5 4 2 37 37 H 0.97002 * 119.99335 * 24.93360 * 8 6 5 38 38 H 1.08001 * 120.85434 * 359.97438 * 12 11 9 39 39 H 1.07997 * 120.34380 * 179.73685 * 13 12 11 40 40 H 1.09003 * 109.47097 * 180.02562 * 15 14 13 41 41 H 1.07995 * 119.71942 * 180.02562 * 19 18 14 42 42 H 1.08997 * 109.58902 * 174.40282 * 20 6 5 43 43 H 1.08998 * 109.59002 * 294.82926 * 20 6 5 44 44 H 0.97003 * 120.00018 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8953 1.0270 0.0000 4 6 2.0436 -0.7278 -1.2463 5 6 3.5675 -0.8464 -1.1712 6 6 3.9570 -1.6656 0.0614 7 1 3.4989 -2.6529 0.0017 8 7 5.4144 -1.8052 0.1154 9 6 5.9678 -2.8481 0.7653 10 8 5.2579 -3.6726 1.3073 11 6 7.4385 -2.9892 0.8192 12 6 8.0259 -4.0712 1.4864 13 6 9.4067 -4.1544 1.5120 14 6 10.1556 -3.1815 0.8742 15 6 11.6598 -3.2720 0.8945 16 9 12.1109 -3.2418 2.2184 17 9 12.0631 -4.4682 0.2915 18 7 9.5745 -2.1756 0.2489 19 6 8.2645 -2.0497 0.2013 20 6 3.4651 -0.9492 1.3230 21 7 2.0226 -0.7009 1.1937 22 6 1.1537 -1.1157 2.1674 23 1 0.1360 -1.3700 1.9104 24 6 1.5810 -1.2093 3.4848 25 7 2.7042 -0.6316 3.8550 26 14 0.5620 -2.1554 4.7322 27 1 0.9961 -3.5754 4.7512 28 1 0.7527 -1.5614 6.0798 29 1 -0.8730 -2.0815 4.3573 30 1 -0.3633 -1.0277 0.0051 31 1 -0.3634 0.5182 0.8874 32 1 -0.3634 0.5093 -0.8925 33 1 1.7660 -0.1642 -2.1370 34 1 1.6030 -1.7237 -1.2934 35 1 4.0061 0.1489 -1.0991 36 1 3.9377 -1.3423 -2.0685 37 1 5.9809 -1.1471 -0.3169 38 1 7.4168 -4.8192 1.9722 39 1 9.8947 -4.9726 2.0207 40 1 12.0819 -2.4287 0.3478 41 1 7.8257 -1.2124 -0.3208 42 1 3.6518 -1.5755 2.1952 43 1 3.9902 -0.0003 1.4327 44 1 3.0029 -0.6973 4.7755 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071549030.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:31:23 Heat of formation + Delta-G solvation = -100.600426 kcal Electronic energy + Delta-G solvation = -29350.106952 eV Core-core repulsion = 24937.747289 eV Total energy + Delta-G solvation = -4412.359663 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -50.11501 -48.10610 -41.88798 -40.52777 -39.17153 -36.14675 -34.70737 -34.08557 -33.49725 -32.04666 -31.68043 -28.57834 -27.58659 -26.62163 -25.05517 -24.34468 -23.84683 -22.34616 -21.68833 -20.98043 -19.33125 -18.78082 -18.52712 -18.35464 -18.32672 -17.52991 -17.12907 -16.51093 -16.19109 -16.10706 -15.79371 -15.54788 -15.26065 -15.18087 -14.99740 -14.74881 -14.56891 -14.47226 -14.39157 -14.33998 -14.10555 -13.60116 -13.48377 -13.08273 -12.74629 -12.74320 -12.58124 -12.39438 -12.27193 -12.11983 -11.98225 -11.69810 -11.51815 -11.25262 -11.21605 -11.14073 -10.76744 -10.58917 -10.53626 -10.13963 -8.62552 -7.85564 -5.31326 -0.79095 -0.06528 1.40535 1.45068 1.50687 1.59721 1.96947 2.16075 2.49825 2.52070 3.10638 3.21342 3.30602 3.46145 3.56647 3.62579 3.73415 3.83405 3.92330 3.96824 4.10020 4.10612 4.25868 4.36657 4.39668 4.60230 4.67953 4.72191 4.79623 4.85391 4.89893 5.01845 5.08779 5.17106 5.19792 5.29104 5.33181 5.42247 5.55398 5.62338 5.70772 5.80099 6.37645 6.40788 6.49244 7.12114 7.18009 7.90426 8.38669 9.19257 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.015442 B = 0.002742 C = 0.002446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1812.753245 B =10209.942726 C =11443.006353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.153 3.847 3 H 0.024 0.976 4 C -0.118 4.118 5 C -0.108 4.108 6 C 0.131 3.869 7 H 0.054 0.946 8 N -0.697 5.697 9 C 0.554 3.446 10 O -0.575 6.575 11 C -0.170 4.170 12 C -0.026 4.026 13 C -0.138 4.138 14 C 0.060 3.940 15 C 0.329 3.671 16 F -0.199 7.199 17 F -0.197 7.197 18 N -0.462 5.462 19 C 0.145 3.855 20 C 0.178 3.822 21 N -0.603 5.603 22 C -0.248 4.248 23 H 0.075 0.925 24 C -0.053 4.053 25 N -0.933 5.933 26 Si 0.955 3.045 27 H -0.296 1.296 28 H -0.295 1.295 29 H -0.262 1.262 30 H 0.045 0.955 31 H 0.037 0.963 32 H 0.079 0.921 33 H 0.096 0.904 34 H 0.052 0.948 35 H 0.077 0.923 36 H 0.088 0.912 37 H 0.414 0.586 38 H 0.150 0.850 39 H 0.168 0.832 40 H 0.165 0.835 41 H 0.198 0.802 42 H 0.043 0.957 43 H 0.000 1.000 44 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.676 -1.725 -13.350 20.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.048 3.952 3 H 0.041 0.959 4 C -0.158 4.158 5 C -0.146 4.146 6 C 0.025 3.975 7 H 0.073 0.927 8 N -0.348 5.348 9 C 0.340 3.660 10 O -0.455 6.455 11 C -0.175 4.175 12 C -0.052 4.052 13 C -0.157 4.157 14 C -0.078 4.078 15 C 0.275 3.725 16 F -0.180 7.180 17 F -0.178 7.178 18 N -0.171 5.171 19 C -0.014 4.014 20 C 0.051 3.949 21 N -0.327 5.327 22 C -0.379 4.379 23 H 0.092 0.908 24 C -0.248 4.248 25 N -0.580 5.580 26 Si 0.784 3.216 27 H -0.224 1.224 28 H -0.222 1.222 29 H -0.186 1.186 30 H 0.064 0.936 31 H 0.056 0.944 32 H 0.097 0.903 33 H 0.115 0.885 34 H 0.071 0.929 35 H 0.095 0.905 36 H 0.107 0.893 37 H 0.252 0.748 38 H 0.168 0.832 39 H 0.185 0.815 40 H 0.182 0.818 41 H 0.214 0.786 42 H 0.062 0.938 43 H 0.018 0.982 44 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 15.732 -1.669 -13.227 20.621 hybrid contribution -0.859 -1.043 1.851 2.291 sum 14.874 -2.712 -11.376 18.921 Atomic orbital electron populations 1.21744 0.94896 1.01108 1.01029 1.20819 0.94219 0.93468 0.86740 0.95880 1.21951 0.94642 1.00892 0.98274 1.21670 0.97077 1.00131 0.95744 1.21607 0.78513 0.99461 0.97946 0.92734 1.45786 1.08117 1.26330 1.54577 1.18402 0.87671 0.81603 0.78284 1.90819 1.64027 1.44050 1.46572 1.21122 0.93498 0.99373 1.03533 1.21905 0.95052 0.95689 0.92562 1.22108 0.93557 1.00624 0.99453 1.22078 0.97150 0.92493 0.96107 1.20325 0.87244 0.87205 0.77759 1.93036 1.89827 1.96888 1.38246 1.93031 1.91234 1.50376 1.83145 1.67321 1.12366 1.21100 1.16314 1.23320 0.87651 0.96845 0.93599 1.20794 0.83774 0.95456 0.94919 1.44321 1.02566 1.65514 1.20320 1.19491 0.95194 1.36458 0.86752 0.90750 1.25766 0.99043 1.01105 0.98929 1.70148 1.25041 1.46379 1.16438 0.85439 0.79370 0.78069 0.78721 1.22369 1.22183 1.18642 0.93601 0.94426 0.90263 0.88515 0.92940 0.90469 0.89321 0.74809 0.83243 0.81481 0.81827 0.78551 0.93808 0.98157 0.94720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.56 7.94 71.98 0.57 -3.98 16 2 C 0.15 5.84 3.50 44.98 0.16 5.99 16 3 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 4 C -0.12 -3.45 5.37 30.67 0.16 -3.28 16 5 C -0.11 -2.91 5.35 30.62 0.16 -2.75 16 6 C 0.13 4.78 2.60 45.07 0.12 4.90 16 7 H 0.05 2.35 7.58 -2.39 -0.02 2.33 16 8 N -0.70 -20.58 5.03 -445.04 -2.24 -22.82 16 9 C 0.55 18.74 7.75 86.79 0.67 19.41 16 10 O -0.57 -25.67 16.08 -3.87 -0.06 -25.73 16 11 C -0.17 -4.39 5.89 -19.99 -0.12 -4.51 16 12 C -0.03 -0.62 9.72 22.73 0.22 -0.40 16 13 C -0.14 -2.70 9.60 22.32 0.21 -2.49 16 14 C 0.06 1.13 6.28 42.57 0.27 1.40 16 15 C 0.33 4.77 5.54 71.24 0.39 5.16 16 16 F -0.20 -3.48 17.25 44.97 0.78 -2.71 16 17 F -0.20 -3.24 17.25 44.97 0.78 -2.46 16 18 N -0.46 -9.05 10.23 -182.82 -1.87 -10.92 16 19 C 0.14 2.86 10.71 85.02 0.91 3.77 16 20 C 0.18 8.59 4.86 86.36 0.42 9.01 16 21 N -0.60 -29.75 2.99 -675.21 -2.02 -31.77 16 22 C -0.25 -13.71 8.61 84.03 0.72 -12.99 16 23 H 0.07 3.96 6.20 -2.91 -0.02 3.95 16 24 C -0.05 -3.09 4.96 84.86 0.42 -2.67 16 25 N -0.93 -57.31 11.14 21.65 0.24 -57.07 16 26 Si 0.95 47.19 29.58 68.60 2.03 49.22 16 27 H -0.30 -14.94 7.11 99.48 0.71 -14.23 16 28 H -0.30 -14.61 7.11 99.48 0.71 -13.90 16 29 H -0.26 -12.07 7.11 99.48 0.71 -11.36 16 30 H 0.04 1.65 7.40 -2.38 -0.02 1.64 16 31 H 0.04 1.46 7.66 -2.39 -0.02 1.45 16 32 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 33 H 0.10 2.12 8.14 -2.39 -0.02 2.10 16 34 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 35 H 0.08 1.88 8.14 -2.38 -0.02 1.86 16 36 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 37 H 0.41 8.37 6.67 -92.71 -0.62 7.75 16 38 H 0.15 3.77 7.74 -2.91 -0.02 3.75 16 39 H 0.17 2.52 8.06 -2.91 -0.02 2.49 16 40 H 0.16 1.41 8.10 -2.39 -0.02 1.39 16 41 H 0.20 2.53 6.42 -2.91 -0.02 2.51 16 42 H 0.04 2.58 6.06 -2.39 -0.01 2.57 16 43 H 0.00 0.02 8.14 -2.39 -0.02 0.00 16 44 H 0.24 14.74 8.31 -92.71 -0.77 13.97 16 Total: -1.00 -76.37 366.75 3.36 -73.01 By element: Atomic # 1 Polarization: 14.26 SS G_CDS: 0.43 Total: 14.68 kcal Atomic # 6 Polarization: 11.27 SS G_CDS: 5.30 Total: 16.57 kcal Atomic # 7 Polarization: -116.69 SS G_CDS: -5.89 Total: -122.58 kcal Atomic # 8 Polarization: -25.67 SS G_CDS: -0.06 Total: -25.73 kcal Atomic # 9 Polarization: -6.72 SS G_CDS: 1.55 Total: -5.17 kcal Atomic # 14 Polarization: 47.19 SS G_CDS: 2.03 Total: 49.22 kcal Total: -76.37 3.36 -73.01 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071549030.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.589 kcal (2) G-P(sol) polarization free energy of solvation -76.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.012 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds