Wall clock time and date at job start Wed Apr 1 2020 00:31:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08995 * 109.58424 * 2 1 4 4 C 1.53191 * 109.58302 * 239.57458 * 2 1 3 5 5 C 1.53038 * 109.31005 * 185.58010 * 4 2 1 6 6 C 1.53035 * 109.54240 * 61.36139 * 5 4 2 7 7 H 1.09003 * 109.52457 * 58.60607 * 6 5 4 8 8 N 1.46504 * 109.50057 * 178.68145 * 6 5 4 9 9 C 1.34776 * 120.00162 * 204.84138 * 8 6 5 10 10 O 1.21549 * 119.99998 * 359.97438 * 9 8 6 11 11 C 1.47837 * 119.99916 * 180.02562 * 9 8 6 12 12 C 1.40029 * 120.55764 * 336.49587 * 11 9 8 13 13 C 1.38356 * 118.28401 * 179.97438 * 12 11 9 14 14 C 1.38347 * 119.30711 * 0.02562 * 13 12 11 15 15 N 1.31929 * 121.07868 * 359.97438 * 14 13 12 16 16 C 1.31686 * 121.87983 * 0.02562 * 15 14 13 17 17 C 1.50699 * 119.71659 * 179.97438 * 16 15 14 18 18 F 1.39901 * 109.46981 * 8.94303 * 17 16 15 19 19 F 1.39903 * 109.47360 * 128.94540 * 17 16 15 20 20 C 1.53191 * 109.31437 * 298.63867 * 6 5 4 21 21 N 1.46917 * 109.58516 * 120.28442 * 2 1 3 22 22 C 1.36941 * 120.63684 * 353.37299 * 21 2 1 23 23 H 1.08001 * 119.99535 * 29.65214 * 22 21 2 24 24 C 1.38810 * 120.00240 * 209.65787 * 22 21 2 25 25 N 1.31622 * 119.99903 * 16.93292 * 24 22 21 26 26 Si 1.86797 * 119.99870 * 196.93336 * 24 22 21 27 27 H 1.48503 * 109.47190 * 90.00178 * 26 24 22 28 28 H 1.48501 * 109.46982 * 209.99830 * 26 24 22 29 29 H 1.48501 * 109.47395 * 330.00090 * 26 24 22 30 30 H 1.09001 * 109.46705 * 299.71923 * 1 2 3 31 31 H 1.09001 * 109.46958 * 59.71394 * 1 2 3 32 32 H 1.08991 * 109.46998 * 179.71992 * 1 2 3 33 33 H 1.09004 * 109.49767 * 305.52877 * 4 2 1 34 34 H 1.09001 * 109.49642 * 65.62639 * 4 2 1 35 35 H 1.09002 * 109.45747 * 301.33942 * 5 4 2 36 36 H 1.09004 * 109.45964 * 181.38763 * 5 4 2 37 37 H 0.97002 * 119.99533 * 24.84175 * 8 6 5 38 38 H 1.07995 * 120.85238 * 0.25845 * 12 11 9 39 39 H 1.08007 * 120.34361 * 179.97438 * 13 12 11 40 40 H 1.07999 * 119.45868 * 179.97438 * 14 13 12 41 41 H 1.09000 * 109.46846 * 248.94457 * 17 16 15 42 42 H 1.09003 * 109.58593 * 174.42093 * 20 6 5 43 43 H 1.09000 * 109.58308 * 294.84792 * 20 6 5 44 44 H 0.96999 * 119.99661 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0435 -0.7309 -1.2445 5 6 3.5674 -0.8495 -1.1691 6 6 3.9569 -1.6656 0.0655 7 1 3.4988 -2.6531 0.0088 8 7 5.4143 -1.8053 0.1196 9 6 5.9678 -2.8455 0.7738 10 8 5.2578 -3.6676 1.3193 11 6 7.4384 -2.9861 0.8289 12 6 8.2477 -2.3885 -0.1452 13 6 9.6183 -2.5498 -0.0478 14 6 10.1406 -3.2894 0.9982 15 7 9.3534 -3.8411 1.9018 16 6 8.0434 -3.7163 1.8523 17 6 7.1904 -4.3677 2.9102 18 9 8.0098 -4.8631 3.9301 19 9 6.3040 -3.4242 3.4408 20 6 3.4651 -0.9453 1.3248 21 7 2.0226 -0.6980 1.1953 22 6 1.1538 -1.1100 2.1704 23 1 0.1388 -1.3744 1.9127 24 6 1.5776 -1.1877 3.4899 25 7 2.6753 -0.5664 3.8662 26 14 0.5901 -2.1740 4.7315 27 1 1.0798 -3.5758 4.7521 28 1 0.7504 -1.5739 6.0803 29 1 -0.8447 -2.1564 4.3491 30 1 -0.3633 0.5095 0.8925 31 1 -0.3633 0.5183 -0.8874 32 1 -0.3633 -1.0276 -0.0050 33 1 1.6029 -1.7269 -1.2892 34 1 1.7660 -0.1694 -2.1366 35 1 4.0061 0.1460 -1.0996 36 1 3.9377 -1.3474 -2.0653 37 1 5.9808 -1.1489 -0.3154 38 1 7.8133 -1.8128 -0.9490 39 1 10.2737 -2.1036 -0.7813 40 1 11.2101 -3.4172 1.0764 41 1 6.6256 -5.1879 2.4671 42 1 3.6519 -1.5691 2.1990 43 1 3.9903 0.0038 1.4315 44 1 2.9716 -0.6210 4.7882 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071674659.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:31:27 Heat of formation + Delta-G solvation = -73.322346 kcal Electronic energy + Delta-G solvation = -30736.578233 eV Core-core repulsion = 26325.401436 eV Total energy + Delta-G solvation = -4411.176797 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -48.64577 -46.64210 -40.81913 -39.17987 -37.58964 -34.62912 -33.21063 -32.73694 -32.37620 -30.58418 -29.83358 -27.02664 -26.00858 -25.13854 -24.42720 -22.51133 -22.29861 -21.07234 -20.24862 -19.35051 -18.06705 -17.57621 -17.30259 -17.05035 -16.42598 -16.07980 -15.59985 -15.31500 -15.08854 -14.72213 -14.39263 -13.93868 -13.80883 -13.70587 -13.48894 -13.38506 -13.33850 -13.06013 -12.93523 -12.70455 -12.41807 -12.33082 -11.89057 -11.49650 -11.27537 -11.13022 -10.88316 -10.68620 -10.58483 -10.40242 -10.29640 -10.26168 -10.06186 -9.95613 -9.80299 -9.51113 -9.46243 -9.45909 -8.63816 -8.38359 -6.59626 -5.71078 -3.15642 0.32924 0.74364 2.82844 3.19858 3.38643 3.46988 3.53099 3.54870 3.55112 4.05837 4.36958 4.42070 4.49272 4.57433 4.68154 4.90785 5.08202 5.15544 5.23518 5.30267 5.34865 5.47694 5.55648 5.56734 5.62768 5.67040 5.93500 6.05199 6.10233 6.24770 6.27003 6.37258 6.42482 6.45669 6.60179 6.68478 6.82506 7.04232 7.12419 7.28440 7.44583 7.71624 7.74101 7.90797 8.38315 8.53311 9.27086 9.91565 10.46728 11.37155 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.012213 B = 0.004299 C = 0.003336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2292.060860 B = 6511.194486 C = 8391.157782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.165 3.835 3 H 0.024 0.976 4 C -0.126 4.126 5 C -0.116 4.116 6 C 0.117 3.883 7 H 0.085 0.915 8 N -0.708 5.708 9 C 0.555 3.445 10 O -0.515 6.515 11 C -0.145 4.145 12 C -0.047 4.047 13 C -0.163 4.163 14 C 0.116 3.884 15 N -0.457 5.457 16 C 0.106 3.894 17 C 0.327 3.673 18 F -0.194 7.194 19 F -0.172 7.172 20 C 0.168 3.832 21 N -0.582 5.582 22 C -0.259 4.259 23 H 0.070 0.930 24 C 0.011 3.989 25 N -0.896 5.896 26 Si 0.898 3.102 27 H -0.285 1.285 28 H -0.292 1.292 29 H -0.279 1.279 30 H 0.061 0.939 31 H 0.037 0.963 32 H 0.053 0.947 33 H 0.061 0.939 34 H 0.055 0.945 35 H 0.059 0.941 36 H 0.051 0.949 37 H 0.392 0.608 38 H 0.147 0.853 39 H 0.147 0.853 40 H 0.167 0.833 41 H 0.135 0.865 42 H 0.095 0.905 43 H 0.017 0.983 44 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.456 -2.378 -12.700 18.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.058 3.942 3 H 0.042 0.958 4 C -0.166 4.166 5 C -0.154 4.154 6 C 0.012 3.988 7 H 0.104 0.896 8 N -0.358 5.358 9 C 0.339 3.661 10 O -0.392 6.392 11 C -0.151 4.151 12 C -0.073 4.073 13 C -0.183 4.183 14 C -0.041 4.041 15 N -0.165 5.165 16 C -0.034 4.034 17 C 0.273 3.727 18 F -0.175 7.175 19 F -0.153 7.153 20 C 0.041 3.959 21 N -0.305 5.305 22 C -0.388 4.388 23 H 0.088 0.912 24 C -0.189 4.189 25 N -0.539 5.539 26 Si 0.728 3.272 27 H -0.212 1.212 28 H -0.218 1.218 29 H -0.205 1.205 30 H 0.081 0.919 31 H 0.056 0.944 32 H 0.072 0.928 33 H 0.080 0.920 34 H 0.074 0.926 35 H 0.078 0.922 36 H 0.069 0.931 37 H 0.225 0.775 38 H 0.164 0.836 39 H 0.165 0.835 40 H 0.184 0.816 41 H 0.152 0.848 42 H 0.113 0.887 43 H 0.035 0.965 44 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 13.316 -3.415 -11.395 17.856 hybrid contribution -0.250 0.507 -0.171 0.591 sum 13.067 -2.908 -11.566 17.691 Atomic orbital electron populations 1.21799 0.95968 1.01385 1.00215 1.20486 0.93121 0.93520 0.87053 0.95804 1.22045 0.94109 1.01394 0.99002 1.21685 0.97624 0.99615 0.96515 1.22096 0.76932 1.01222 0.98579 0.89649 1.45960 1.09037 1.26116 1.54657 1.17841 0.86122 0.82618 0.79514 1.90838 1.62336 1.42045 1.43932 1.20922 0.95656 1.00903 0.97604 1.21806 0.93611 0.94992 0.96915 1.22230 0.95644 1.00286 1.00139 1.23017 1.00292 0.91726 0.89092 1.67460 1.03669 1.19341 1.26077 1.21956 0.91295 0.95147 0.95012 1.20124 0.81838 0.89243 0.81511 1.92997 1.74156 1.87918 1.62463 1.93151 1.68350 1.66622 1.87147 1.21064 0.83695 0.96864 0.94248 1.44009 1.02547 1.64783 1.19202 1.19106 0.95057 1.38686 0.85959 0.91228 1.25065 0.97830 0.99014 0.97002 1.70001 1.24758 1.42340 1.16795 0.86368 0.79561 0.80458 0.80830 1.21212 1.21831 1.20475 0.91945 0.94402 0.92806 0.92008 0.92641 0.92247 0.93074 0.77482 0.83558 0.83537 0.81582 0.84753 0.88704 0.96507 0.93620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.52 7.95 37.16 0.30 -2.23 16 2 C 0.16 3.31 3.50 -67.60 -0.24 3.07 16 3 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 4 C -0.13 -2.05 5.37 -26.61 -0.14 -2.19 16 5 C -0.12 -1.76 5.35 -26.69 -0.14 -1.90 16 6 C 0.12 2.16 2.60 -67.81 -0.18 1.98 16 7 H 0.09 1.79 7.58 -51.93 -0.39 1.40 16 8 N -0.71 -10.85 5.01 -54.64 -0.27 -11.13 16 9 C 0.55 9.35 6.94 -12.33 -0.09 9.26 16 10 O -0.52 -10.66 12.98 5.32 0.07 -10.59 16 11 C -0.15 -1.99 5.84 -104.82 -0.61 -2.60 16 12 C -0.05 -0.44 9.51 -38.87 -0.37 -0.81 16 13 C -0.16 -1.22 10.10 -39.50 -0.40 -1.62 16 14 C 0.12 1.07 11.17 -17.47 -0.20 0.87 16 15 N -0.46 -6.12 9.75 -9.15 -0.09 -6.21 16 16 C 0.11 1.59 6.59 -82.18 -0.54 1.04 16 17 C 0.33 5.44 4.53 36.00 0.16 5.61 16 18 F -0.19 -3.26 16.89 2.25 0.04 -3.22 16 19 F -0.17 -3.55 14.92 2.25 0.03 -3.52 16 20 C 0.17 4.01 4.87 -3.71 -0.02 3.99 16 21 N -0.58 -14.32 2.98 -164.78 -0.49 -14.81 16 22 C -0.26 -7.06 8.56 -15.06 -0.13 -7.19 16 23 H 0.07 1.86 6.24 -52.49 -0.33 1.53 16 24 C 0.01 0.30 4.90 -17.43 -0.09 0.22 16 25 N -0.90 -26.79 11.31 55.49 0.63 -26.17 16 26 Si 0.90 22.63 29.59 -169.99 -5.03 17.60 16 27 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 28 H -0.29 -7.42 7.11 56.52 0.40 -7.01 16 29 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 30 H 0.06 1.26 7.62 -51.93 -0.40 0.87 16 31 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.05 1.01 7.44 -51.93 -0.39 0.63 16 33 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 34 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.39 4.54 7.24 -40.82 -0.30 4.25 16 38 H 0.15 0.93 7.11 -52.49 -0.37 0.55 16 39 H 0.15 0.56 8.06 -52.48 -0.42 0.14 16 40 H 0.17 0.94 8.06 -52.49 -0.42 0.52 16 41 H 0.14 2.02 7.49 -51.93 -0.39 1.63 16 42 H 0.09 2.70 6.18 -51.93 -0.32 2.38 16 43 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 44 H 0.25 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 360.86 15.07 5.44 5.44 Total: -1.00 -34.38 360.86 -8.17 -42.55 By element: Atomic # 1 Polarization: 8.38 SS G_CDS: -5.82 Total: 2.55 kcal Atomic # 6 Polarization: 10.18 SS G_CDS: -2.67 Total: 7.50 kcal Atomic # 7 Polarization: -58.08 SS G_CDS: -0.23 Total: -58.31 kcal Atomic # 8 Polarization: -10.66 SS G_CDS: 0.07 Total: -10.59 kcal Atomic # 9 Polarization: -6.81 SS G_CDS: 0.07 Total: -6.74 kcal Atomic # 14 Polarization: 22.63 SS G_CDS: -5.03 Total: 17.60 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -34.38 -8.17 -42.55 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071674659.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.772 kcal (2) G-P(sol) polarization free energy of solvation -34.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds