Wall clock time and date at job start Wed Apr 1 2020 00:31:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08995 * 109.58424 * 2 1 4 4 C 1.53191 * 109.58302 * 239.57458 * 2 1 3 5 5 C 1.53038 * 109.31005 * 185.58010 * 4 2 1 6 6 C 1.53035 * 109.54240 * 61.36139 * 5 4 2 7 7 H 1.09003 * 109.52457 * 58.60607 * 6 5 4 8 8 N 1.46504 * 109.50057 * 178.68145 * 6 5 4 9 9 C 1.34776 * 120.00162 * 204.84138 * 8 6 5 10 10 O 1.21549 * 119.99998 * 359.97438 * 9 8 6 11 11 C 1.47837 * 119.99916 * 180.02562 * 9 8 6 12 12 C 1.40029 * 120.55764 * 336.49587 * 11 9 8 13 13 C 1.38356 * 118.28401 * 179.97438 * 12 11 9 14 14 C 1.38347 * 119.30711 * 0.02562 * 13 12 11 15 15 N 1.31929 * 121.07868 * 359.97438 * 14 13 12 16 16 C 1.31686 * 121.87983 * 0.02562 * 15 14 13 17 17 C 1.50699 * 119.71659 * 179.97438 * 16 15 14 18 18 F 1.39901 * 109.46981 * 8.94303 * 17 16 15 19 19 F 1.39903 * 109.47360 * 128.94540 * 17 16 15 20 20 C 1.53191 * 109.31437 * 298.63867 * 6 5 4 21 21 N 1.46917 * 109.58516 * 120.28442 * 2 1 3 22 22 C 1.36941 * 120.63684 * 353.37299 * 21 2 1 23 23 H 1.08001 * 119.99535 * 29.65214 * 22 21 2 24 24 C 1.38810 * 120.00240 * 209.65787 * 22 21 2 25 25 N 1.31622 * 119.99903 * 16.93292 * 24 22 21 26 26 Si 1.86797 * 119.99870 * 196.93336 * 24 22 21 27 27 H 1.48503 * 109.47190 * 90.00178 * 26 24 22 28 28 H 1.48501 * 109.46982 * 209.99830 * 26 24 22 29 29 H 1.48501 * 109.47395 * 330.00090 * 26 24 22 30 30 H 1.09001 * 109.46705 * 299.71923 * 1 2 3 31 31 H 1.09001 * 109.46958 * 59.71394 * 1 2 3 32 32 H 1.08991 * 109.46998 * 179.71992 * 1 2 3 33 33 H 1.09004 * 109.49767 * 305.52877 * 4 2 1 34 34 H 1.09001 * 109.49642 * 65.62639 * 4 2 1 35 35 H 1.09002 * 109.45747 * 301.33942 * 5 4 2 36 36 H 1.09004 * 109.45964 * 181.38763 * 5 4 2 37 37 H 0.97002 * 119.99533 * 24.84175 * 8 6 5 38 38 H 1.07995 * 120.85238 * 0.25845 * 12 11 9 39 39 H 1.08007 * 120.34361 * 179.97438 * 13 12 11 40 40 H 1.07999 * 119.45868 * 179.97438 * 14 13 12 41 41 H 1.09000 * 109.46846 * 248.94457 * 17 16 15 42 42 H 1.09003 * 109.58593 * 174.42093 * 20 6 5 43 43 H 1.09000 * 109.58308 * 294.84792 * 20 6 5 44 44 H 0.96999 * 119.99661 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0435 -0.7309 -1.2445 5 6 3.5674 -0.8495 -1.1691 6 6 3.9569 -1.6656 0.0655 7 1 3.4988 -2.6531 0.0088 8 7 5.4143 -1.8053 0.1196 9 6 5.9678 -2.8455 0.7738 10 8 5.2578 -3.6676 1.3193 11 6 7.4384 -2.9861 0.8289 12 6 8.2477 -2.3885 -0.1452 13 6 9.6183 -2.5498 -0.0478 14 6 10.1406 -3.2894 0.9982 15 7 9.3534 -3.8411 1.9018 16 6 8.0434 -3.7163 1.8523 17 6 7.1904 -4.3677 2.9102 18 9 8.0098 -4.8631 3.9301 19 9 6.3040 -3.4242 3.4408 20 6 3.4651 -0.9453 1.3248 21 7 2.0226 -0.6980 1.1953 22 6 1.1538 -1.1100 2.1704 23 1 0.1388 -1.3744 1.9127 24 6 1.5776 -1.1877 3.4899 25 7 2.6753 -0.5664 3.8662 26 14 0.5901 -2.1740 4.7315 27 1 1.0798 -3.5758 4.7521 28 1 0.7504 -1.5739 6.0803 29 1 -0.8447 -2.1564 4.3491 30 1 -0.3633 0.5095 0.8925 31 1 -0.3633 0.5183 -0.8874 32 1 -0.3633 -1.0276 -0.0050 33 1 1.6029 -1.7269 -1.2892 34 1 1.7660 -0.1694 -2.1366 35 1 4.0061 0.1460 -1.0996 36 1 3.9377 -1.3474 -2.0653 37 1 5.9808 -1.1489 -0.3154 38 1 7.8133 -1.8128 -0.9490 39 1 10.2737 -2.1036 -0.7813 40 1 11.2101 -3.4172 1.0764 41 1 6.6256 -5.1879 2.4671 42 1 3.6519 -1.5691 2.1990 43 1 3.9903 0.0038 1.4315 44 1 2.9716 -0.6210 4.7882 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071674659.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:31:26 Heat of formation + Delta-G solvation = -97.552656 kcal Electronic energy + Delta-G solvation = -30737.628938 eV Core-core repulsion = 26325.401436 eV Total energy + Delta-G solvation = -4412.227502 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -50.04304 -48.06681 -41.82751 -40.44764 -39.12885 -36.13390 -34.71246 -34.02980 -33.33690 -32.01571 -31.67104 -28.23063 -27.59679 -26.77587 -25.51539 -24.00721 -23.51632 -22.40760 -21.67680 -20.96935 -19.17818 -18.72935 -18.54597 -18.29521 -18.29254 -17.45633 -17.12384 -16.51352 -16.19500 -16.09306 -15.84942 -15.57255 -15.26148 -15.05029 -14.92358 -14.80546 -14.51471 -14.36972 -14.22825 -14.12772 -13.96184 -13.49059 -13.48323 -13.08878 -12.75383 -12.74517 -12.57879 -12.52234 -12.27104 -12.11485 -11.96779 -11.65451 -11.42314 -11.19360 -11.11137 -11.08397 -10.67474 -10.54057 -10.39953 -10.09651 -8.62151 -7.85739 -5.31060 -0.57927 -0.03220 1.38662 1.44656 1.49656 1.67439 2.04093 2.30360 2.49926 2.59130 3.02380 3.25484 3.31210 3.48232 3.66066 3.73652 3.82515 3.90285 3.97281 4.08366 4.11131 4.25162 4.28423 4.38645 4.40240 4.62132 4.72353 4.80261 4.82717 4.90558 4.93442 5.02071 5.08711 5.19856 5.30112 5.33660 5.40858 5.45806 5.56317 5.62605 5.71303 5.80586 6.39527 6.48910 6.62557 7.13958 7.19268 7.91133 8.39660 9.18900 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.012213 B = 0.004299 C = 0.003336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2292.060860 B = 6511.194486 C = 8391.157782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.153 3.847 3 H 0.021 0.979 4 C -0.118 4.118 5 C -0.106 4.106 6 C 0.133 3.867 7 H 0.056 0.944 8 N -0.695 5.695 9 C 0.550 3.450 10 O -0.566 6.566 11 C -0.164 4.164 12 C -0.038 4.038 13 C -0.136 4.136 14 C 0.115 3.885 15 N -0.486 5.486 16 C 0.083 3.917 17 C 0.318 3.682 18 F -0.200 7.200 19 F -0.203 7.203 20 C 0.179 3.821 21 N -0.602 5.602 22 C -0.251 4.251 23 H 0.075 0.925 24 C -0.049 4.049 25 N -0.930 5.930 26 Si 0.950 3.050 27 H -0.298 1.298 28 H -0.296 1.296 29 H -0.259 1.259 30 H 0.035 0.965 31 H 0.079 0.921 32 H 0.045 0.955 33 H 0.053 0.947 34 H 0.097 0.903 35 H 0.074 0.926 36 H 0.092 0.908 37 H 0.414 0.586 38 H 0.183 0.817 39 H 0.201 0.799 40 H 0.206 0.794 41 H 0.138 0.862 42 H 0.039 0.961 43 H -0.005 1.005 44 H 0.242 0.758 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.293 -1.233 -17.154 23.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.048 3.952 3 H 0.039 0.961 4 C -0.157 4.157 5 C -0.144 4.144 6 C 0.027 3.973 7 H 0.075 0.925 8 N -0.346 5.346 9 C 0.336 3.664 10 O -0.445 6.445 11 C -0.170 4.170 12 C -0.064 4.064 13 C -0.154 4.154 14 C -0.042 4.042 15 N -0.195 5.195 16 C -0.057 4.057 17 C 0.264 3.736 18 F -0.181 7.181 19 F -0.184 7.184 20 C 0.052 3.948 21 N -0.327 5.327 22 C -0.381 4.381 23 H 0.093 0.907 24 C -0.245 4.245 25 N -0.576 5.576 26 Si 0.779 3.221 27 H -0.226 1.226 28 H -0.223 1.223 29 H -0.183 1.183 30 H 0.055 0.945 31 H 0.098 0.902 32 H 0.064 0.936 33 H 0.072 0.928 34 H 0.116 0.884 35 H 0.093 0.907 36 H 0.110 0.890 37 H 0.251 0.749 38 H 0.201 0.799 39 H 0.218 0.782 40 H 0.222 0.778 41 H 0.155 0.845 42 H 0.057 0.943 43 H 0.013 0.987 44 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 15.153 -2.243 -15.907 22.084 hybrid contribution -0.708 0.184 1.133 1.348 sum 14.445 -2.059 -14.775 20.765 Atomic orbital electron populations 1.21738 0.94896 1.01120 1.00978 1.20820 0.94226 0.93386 0.86795 0.96121 1.21947 0.94682 1.00899 0.98177 1.21658 0.97028 1.00030 0.95721 1.21567 0.78557 0.99478 0.97704 0.92537 1.45704 1.07997 1.26407 1.54519 1.18443 0.87654 0.82019 0.78293 1.90807 1.63990 1.43950 1.45795 1.20681 0.93742 1.03065 0.99477 1.22273 0.94208 0.93827 0.96081 1.22796 0.95192 0.97809 0.99649 1.23837 1.01630 0.90386 0.88314 1.67425 1.02988 1.20919 1.28208 1.21518 0.92017 0.96972 0.95147 1.20377 0.82150 0.89236 0.81861 1.92962 1.74176 1.87978 1.62965 1.93076 1.69774 1.67821 1.87772 1.20745 0.83811 0.95143 0.95095 1.44316 1.02474 1.65744 1.20127 1.19450 0.95530 1.36600 0.86529 0.90740 1.25742 0.99092 1.00751 0.98910 1.70158 1.26659 1.44622 1.16187 0.85520 0.79471 0.78297 0.78823 1.22557 1.22300 1.18287 0.94545 0.90231 0.93554 0.92840 0.88434 0.90706 0.88976 0.74881 0.79928 0.78225 0.77756 0.84499 0.94291 0.98651 0.94852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.62 7.95 71.98 0.57 -4.05 16 2 C 0.15 5.94 3.50 44.98 0.16 6.10 16 3 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 4 C -0.12 -3.44 5.37 30.67 0.16 -3.27 16 5 C -0.11 -2.85 5.35 30.62 0.16 -2.68 16 6 C 0.13 4.92 2.60 45.07 0.12 5.04 16 7 H 0.06 2.44 7.58 -2.39 -0.02 2.43 16 8 N -0.70 -20.87 5.01 -445.05 -2.23 -23.10 16 9 C 0.55 19.07 6.94 86.78 0.60 19.68 16 10 O -0.57 -25.27 12.98 -3.87 -0.05 -25.32 16 11 C -0.16 -4.40 5.84 -19.99 -0.12 -4.52 16 12 C -0.04 -0.56 9.51 22.73 0.22 -0.34 16 13 C -0.14 -1.28 10.10 22.32 0.23 -1.06 16 14 C 0.12 1.69 11.17 84.70 0.95 2.63 16 15 N -0.49 -12.57 9.75 -182.85 -1.78 -14.36 16 16 C 0.08 2.53 6.59 42.89 0.28 2.81 16 17 C 0.32 11.56 4.53 71.24 0.32 11.88 16 18 F -0.20 -7.24 16.89 44.97 0.76 -6.48 16 19 F -0.20 -9.32 14.92 44.97 0.67 -8.65 16 20 C 0.18 8.94 4.87 86.36 0.42 9.36 16 21 N -0.60 -30.41 2.98 -675.23 -2.02 -32.43 16 22 C -0.25 -14.17 8.56 84.03 0.72 -13.45 16 23 H 0.08 4.06 6.24 -2.91 -0.02 4.04 16 24 C -0.05 -2.95 4.90 84.86 0.42 -2.53 16 25 N -0.93 -59.32 11.31 21.65 0.24 -59.07 16 26 Si 0.95 48.82 29.59 68.60 2.03 50.85 16 27 H -0.30 -15.75 7.11 99.48 0.71 -15.04 16 28 H -0.30 -15.29 7.11 99.48 0.71 -14.58 16 29 H -0.26 -12.26 7.11 99.48 0.71 -11.56 16 30 H 0.04 1.45 7.62 -2.39 -0.02 1.43 16 31 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 32 H 0.05 1.69 7.44 -2.39 -0.02 1.67 16 33 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 34 H 0.10 2.12 8.14 -2.39 -0.02 2.10 16 35 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 36 H 0.09 1.83 8.14 -2.38 -0.02 1.81 16 37 H 0.41 8.46 7.24 -92.71 -0.67 7.79 16 38 H 0.18 1.26 7.11 -2.91 -0.02 1.24 16 39 H 0.20 -0.12 8.06 -2.91 -0.02 -0.14 16 40 H 0.21 1.28 8.06 -2.91 -0.02 1.25 16 41 H 0.14 4.66 7.49 -2.39 -0.02 4.65 16 42 H 0.04 2.38 6.18 -2.39 -0.01 2.37 16 43 H 0.00 -0.24 8.14 -2.39 -0.02 -0.26 16 44 H 0.24 15.36 8.31 -92.71 -0.77 14.59 16 Total: -1.00 -85.96 360.86 3.21 -82.76 By element: Atomic # 1 Polarization: 9.83 SS G_CDS: 0.37 Total: 10.20 kcal Atomic # 6 Polarization: 20.38 SS G_CDS: 5.21 Total: 25.59 kcal Atomic # 7 Polarization: -123.17 SS G_CDS: -5.78 Total: -128.96 kcal Atomic # 8 Polarization: -25.27 SS G_CDS: -0.05 Total: -25.32 kcal Atomic # 9 Polarization: -16.55 SS G_CDS: 1.43 Total: -15.12 kcal Atomic # 14 Polarization: 48.82 SS G_CDS: 2.03 Total: 50.85 kcal Total: -85.96 3.21 -82.76 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071674659.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.795 kcal (2) G-P(sol) polarization free energy of solvation -85.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds