Wall clock time and date at job start Wed Apr 1 2020 00:31:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.70774 * 2 1 4 4 C 1.53196 * 109.58624 * 239.63848 * 2 1 3 5 5 C 1.53041 * 109.31308 * 185.57948 * 4 2 1 6 6 C 1.53039 * 109.53623 * 61.36593 * 5 4 2 7 7 H 1.09005 * 109.49595 * 178.68315 * 6 5 4 8 8 N 1.46495 * 109.52297 * 58.60739 * 6 5 4 9 9 C 1.34775 * 120.00324 * 155.14164 * 8 6 5 10 10 O 1.21557 * 119.99981 * 0.02562 * 9 8 6 11 11 C 1.47843 * 120.00139 * 179.97438 * 9 8 6 12 12 C 1.40018 * 120.56015 * 359.97438 * 11 9 8 13 13 C 1.38357 * 118.29222 * 179.97438 * 12 11 9 14 14 C 1.38353 * 119.29923 * 0.02562 * 13 12 11 15 15 N 1.31925 * 121.08141 * 359.97438 * 14 13 12 16 16 C 1.31698 * 121.87865 * 359.77103 * 15 14 13 17 17 C 1.50698 * 119.71606 * 180.24569 * 16 15 14 18 18 F 1.39896 * 109.47077 * 120.24511 * 17 16 15 19 19 F 1.39900 * 109.46934 * 240.24688 * 17 16 15 20 20 C 1.53184 * 109.31637 * 298.63594 * 6 5 4 21 21 N 1.46928 * 108.77752 * 54.63557 * 20 6 5 22 22 C 1.36930 * 120.63025 * 126.11424 * 21 20 6 23 23 H 1.08006 * 120.00027 * 209.12934 * 22 21 20 24 24 C 1.38816 * 120.00243 * 29.14141 * 22 21 20 25 25 N 1.31612 * 119.99748 * 15.07593 * 24 22 21 26 26 Si 1.86796 * 120.00120 * 195.08009 * 24 22 21 27 27 H 1.48500 * 109.47032 * 89.99376 * 26 24 22 28 28 H 1.48494 * 109.47144 * 209.99508 * 26 24 22 29 29 H 1.48500 * 109.46905 * 329.99873 * 26 24 22 30 30 H 1.08999 * 109.46642 * 299.65027 * 1 2 3 31 31 H 1.08998 * 109.46990 * 59.64663 * 1 2 3 32 32 H 1.08996 * 109.47351 * 179.64507 * 1 2 3 33 33 H 1.09005 * 109.49282 * 65.63188 * 4 2 1 34 34 H 1.08994 * 109.49835 * 305.53492 * 4 2 1 35 35 H 1.09001 * 109.45763 * 301.35066 * 5 4 2 36 36 H 1.09004 * 109.45050 * 181.38483 * 5 4 2 37 37 H 0.97010 * 120.00189 * 335.14004 * 8 6 5 38 38 H 1.08001 * 120.85520 * 0.02562 * 12 11 9 39 39 H 1.08003 * 120.34851 * 179.97438 * 13 12 11 40 40 H 1.08000 * 119.45938 * 179.97438 * 14 13 12 41 41 H 1.08999 * 109.47070 * 0.24050 * 17 16 15 42 42 H 1.08999 * 109.58564 * 294.84902 * 20 6 5 43 43 H 1.09003 * 109.70697 * 174.49375 * 20 6 5 44 44 H 0.97000 * 120.00162 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8976 1.0261 0.0000 4 6 2.0436 -0.7295 -1.2454 5 6 3.5675 -0.8482 -1.1701 6 6 3.9568 -1.6658 0.0636 7 1 5.0412 -1.7697 0.1038 8 7 3.3411 -2.9928 -0.0143 9 6 3.8964 -4.0328 0.6388 10 8 4.9080 -3.8696 1.2928 11 6 3.2747 -5.3718 0.5607 12 6 2.1086 -5.5727 -0.1879 13 6 1.5668 -6.8452 -0.2291 14 6 2.1883 -7.8684 0.4643 15 7 3.2865 -7.6496 1.1617 16 6 3.8427 -6.4577 1.2276 17 6 5.1007 -6.2639 2.0345 18 9 6.1238 -5.8022 1.1995 19 9 4.8659 -5.3268 3.0463 20 6 3.4650 -0.9470 1.3238 21 7 2.0225 -0.6996 1.1945 22 6 1.1531 -1.1180 2.1661 23 1 0.1361 -1.3735 1.9072 24 6 1.5786 -1.2138 3.4840 25 7 2.6995 -0.6337 3.8573 26 14 0.5605 -2.1658 4.7275 27 1 0.9987 -3.5846 4.7435 28 1 0.7475 -1.5747 6.0768 29 1 -0.8741 -2.0951 4.3505 30 1 -0.3632 0.5084 0.8931 31 1 -0.3633 0.5193 -0.8868 32 1 -0.3634 -1.0276 -0.0064 33 1 1.7661 -0.1669 -2.1368 34 1 1.6029 -1.7254 -1.2912 35 1 4.0061 0.1472 -1.0992 36 1 3.9376 -1.3451 -2.0669 37 1 2.5336 -3.1230 -0.5359 38 1 1.6444 -4.7556 -0.7202 39 1 0.6678 -7.0374 -0.7960 40 1 1.7674 -8.8626 0.4343 41 1 5.3962 -7.2136 2.4804 42 1 3.9903 0.0019 1.4317 43 1 3.6520 -1.5697 2.1987 44 1 2.9972 -0.7009 4.7780 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071674660.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:31:31 Heat of formation + Delta-G solvation = -68.013297 kcal Electronic energy + Delta-G solvation = -31717.340756 eV Core-core repulsion = 27306.394177 eV Total energy + Delta-G solvation = -4410.946579 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -48.46153 -46.43752 -40.63545 -39.13844 -37.47203 -34.25586 -33.15210 -32.65572 -32.17397 -30.47844 -29.85451 -26.90168 -26.13378 -25.03822 -24.50447 -22.47715 -22.17247 -21.05749 -20.38932 -18.78099 -18.11748 -17.40656 -17.16889 -16.75699 -16.38619 -15.85483 -15.44692 -15.08965 -14.97811 -14.66571 -14.28106 -14.04083 -13.73514 -13.60685 -13.34516 -13.22782 -13.09450 -12.95695 -12.82413 -12.68476 -12.49344 -12.03641 -11.88377 -11.24063 -11.18438 -11.10572 -10.95225 -10.90287 -10.71044 -10.39215 -10.34208 -10.13985 -9.97258 -9.95671 -9.56650 -9.46943 -9.37515 -9.32677 -8.42962 -8.37994 -6.59490 -5.72823 -3.17418 0.47641 0.88554 3.05013 3.39816 3.44810 3.45028 3.48775 3.51453 3.83670 4.27994 4.45332 4.51531 4.54190 4.66628 4.87299 5.06676 5.19910 5.29849 5.34832 5.35762 5.37810 5.46171 5.49080 5.58923 5.72602 5.81080 5.98540 6.08032 6.13040 6.24642 6.29932 6.32385 6.41880 6.49837 6.57486 6.66785 6.87324 7.02616 7.09164 7.38408 7.52638 7.72608 7.84719 8.00770 8.50894 8.68719 9.25176 9.89721 10.45355 11.34913 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.010373 B = 0.005351 C = 0.004805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2698.676848 B = 5231.734445 C = 5826.163043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.165 3.835 3 H 0.025 0.975 4 C -0.130 4.130 5 C -0.119 4.119 6 C 0.120 3.880 7 H 0.078 0.922 8 N -0.690 5.690 9 C 0.549 3.451 10 O -0.510 6.510 11 C -0.132 4.132 12 C -0.045 4.045 13 C -0.159 4.159 14 C 0.112 3.888 15 N -0.465 5.465 16 C 0.096 3.904 17 C 0.338 3.662 18 F -0.184 7.184 19 F -0.175 7.175 20 C 0.160 3.840 21 N -0.582 5.582 22 C -0.254 4.254 23 H 0.067 0.933 24 C 0.009 3.991 25 N -0.896 5.896 26 Si 0.894 3.106 27 H -0.288 1.288 28 H -0.291 1.291 29 H -0.281 1.281 30 H 0.061 0.939 31 H 0.036 0.964 32 H 0.050 0.950 33 H 0.053 0.947 34 H 0.052 0.948 35 H 0.072 0.928 36 H 0.051 0.949 37 H 0.392 0.608 38 H 0.145 0.855 39 H 0.147 0.853 40 H 0.167 0.833 41 H 0.118 0.882 42 H 0.026 0.974 43 H 0.100 0.900 44 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.114 -10.877 -12.090 16.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.058 3.942 3 H 0.043 0.957 4 C -0.169 4.169 5 C -0.157 4.157 6 C 0.014 3.986 7 H 0.096 0.904 8 N -0.341 5.341 9 C 0.333 3.667 10 O -0.386 6.386 11 C -0.138 4.138 12 C -0.072 4.072 13 C -0.179 4.179 14 C -0.046 4.046 15 N -0.173 5.173 16 C -0.044 4.044 17 C 0.284 3.716 18 F -0.165 7.165 19 F -0.156 7.156 20 C 0.034 3.966 21 N -0.305 5.305 22 C -0.383 4.383 23 H 0.085 0.915 24 C -0.191 4.191 25 N -0.539 5.539 26 Si 0.724 3.276 27 H -0.215 1.215 28 H -0.217 1.217 29 H -0.206 1.206 30 H 0.080 0.920 31 H 0.055 0.945 32 H 0.069 0.931 33 H 0.072 0.928 34 H 0.070 0.930 35 H 0.091 0.909 36 H 0.070 0.930 37 H 0.227 0.773 38 H 0.162 0.838 39 H 0.164 0.836 40 H 0.184 0.816 41 H 0.135 0.865 42 H 0.044 0.956 43 H 0.118 0.882 44 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 0.097 -11.345 -10.974 15.785 hybrid contribution -1.490 0.242 0.010 1.510 sum -1.393 -11.104 -10.965 15.667 Atomic orbital electron populations 1.21788 0.96142 1.01092 1.00221 1.20466 0.92846 0.93710 0.87195 0.95701 1.22072 0.95185 1.00471 0.99215 1.21699 0.96967 1.00259 0.96765 1.21828 0.97108 0.81280 0.98352 0.90354 1.45677 1.29201 1.08597 1.50644 1.17783 0.84728 0.83523 0.80697 1.90873 1.24160 1.84252 1.39364 1.21053 0.97249 0.95913 0.99559 1.21850 0.92828 0.97846 0.94628 1.22221 1.01483 0.93377 1.00806 1.22910 0.90412 0.99853 0.91391 1.67303 1.10812 1.21948 1.17281 1.21898 0.97069 0.89040 0.96372 1.19746 0.81958 0.89955 0.79988 1.93027 1.59810 1.90869 1.72824 1.93114 1.94578 1.68441 1.59501 1.21216 0.83680 0.97152 0.94584 1.44031 1.02680 1.64650 1.19169 1.19042 0.94658 1.38361 0.86245 0.91532 1.25037 0.97634 0.99456 0.96942 1.69959 1.23181 1.43897 1.16875 0.86431 0.79639 0.80194 0.81347 1.21520 1.21702 1.20606 0.92005 0.94461 0.93085 0.92823 0.92981 0.90949 0.93031 0.77281 0.83751 0.83564 0.81623 0.86475 0.95627 0.88199 0.93595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.37 7.94 37.16 0.30 -2.07 16 2 C 0.16 3.15 3.50 -67.59 -0.24 2.91 16 3 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 4 C -0.13 -1.98 5.21 -26.61 -0.14 -2.12 16 5 C -0.12 -1.82 5.59 -26.69 -0.15 -1.97 16 6 C 0.12 2.26 2.81 -67.82 -0.19 2.07 16 7 H 0.08 1.54 7.58 -51.93 -0.39 1.14 16 8 N -0.69 -12.22 4.87 -54.64 -0.27 -12.49 16 9 C 0.55 10.64 7.55 -12.33 -0.09 10.55 16 10 O -0.51 -11.55 11.00 5.32 0.06 -11.49 16 11 C -0.13 -2.18 5.85 -104.82 -0.61 -2.79 16 12 C -0.05 -0.56 9.65 -38.87 -0.37 -0.94 16 13 C -0.16 -1.56 10.10 -39.50 -0.40 -1.95 16 14 C 0.11 1.17 11.17 -17.47 -0.20 0.98 16 15 N -0.46 -6.45 10.24 -9.14 -0.09 -6.54 16 16 C 0.10 1.56 6.31 -82.17 -0.52 1.04 16 17 C 0.34 5.67 5.02 36.00 0.18 5.85 16 18 F -0.18 -3.35 15.04 2.25 0.03 -3.31 16 19 F -0.18 -3.65 15.02 2.25 0.03 -3.61 16 20 C 0.16 3.80 4.90 -3.71 -0.02 3.78 16 21 N -0.58 -13.58 2.91 -164.77 -0.48 -14.06 16 22 C -0.25 -6.61 8.60 -15.06 -0.13 -6.74 16 23 H 0.07 1.70 6.20 -52.48 -0.33 1.37 16 24 C 0.01 0.25 4.96 -17.43 -0.09 0.16 16 25 N -0.90 -26.47 11.14 55.49 0.62 -25.85 16 26 Si 0.89 22.30 29.58 -169.99 -5.03 17.27 16 27 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 28 H -0.29 -7.37 7.11 56.52 0.40 -6.96 16 29 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 30 H 0.06 1.21 7.63 -51.93 -0.40 0.81 16 31 H 0.04 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.05 0.89 7.43 -51.93 -0.39 0.50 16 33 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.05 0.76 6.40 -51.93 -0.33 0.43 16 35 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 36 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 37 H 0.39 6.01 4.88 -40.82 -0.20 5.81 16 38 H 0.14 1.50 6.52 -52.49 -0.34 1.16 16 39 H 0.15 0.89 8.06 -52.48 -0.42 0.46 16 40 H 0.17 1.09 8.06 -52.49 -0.42 0.67 16 41 H 0.12 1.51 8.11 -51.93 -0.42 1.09 16 42 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 43 H 0.10 2.83 6.05 -51.93 -0.31 2.52 16 44 H 0.25 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 354.36 15.07 5.34 5.34 Total: -1.00 -33.51 354.36 -8.08 -41.59 By element: Atomic # 1 Polarization: 10.03 SS G_CDS: -5.63 Total: 4.41 kcal Atomic # 6 Polarization: 11.43 SS G_CDS: -2.67 Total: 8.76 kcal Atomic # 7 Polarization: -58.72 SS G_CDS: -0.22 Total: -58.94 kcal Atomic # 8 Polarization: -11.55 SS G_CDS: 0.06 Total: -11.49 kcal Atomic # 9 Polarization: -6.99 SS G_CDS: 0.07 Total: -6.93 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.03 Total: 17.27 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -33.51 -8.08 -41.59 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071674660.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.427 kcal (2) G-P(sol) polarization free energy of solvation -33.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.586 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds