Wall clock time and date at job start Wed Apr 1 2020 00:31:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.70774 * 2 1 4 4 C 1.53196 * 109.58624 * 239.63848 * 2 1 3 5 5 C 1.53041 * 109.31308 * 185.57948 * 4 2 1 6 6 C 1.53039 * 109.53623 * 61.36593 * 5 4 2 7 7 H 1.09005 * 109.49595 * 178.68315 * 6 5 4 8 8 N 1.46495 * 109.52297 * 58.60739 * 6 5 4 9 9 C 1.34775 * 120.00324 * 155.14164 * 8 6 5 10 10 O 1.21557 * 119.99981 * 0.02562 * 9 8 6 11 11 C 1.47843 * 120.00139 * 179.97438 * 9 8 6 12 12 C 1.40018 * 120.56015 * 359.97438 * 11 9 8 13 13 C 1.38357 * 118.29222 * 179.97438 * 12 11 9 14 14 C 1.38353 * 119.29923 * 0.02562 * 13 12 11 15 15 N 1.31925 * 121.08141 * 359.97438 * 14 13 12 16 16 C 1.31698 * 121.87865 * 359.77103 * 15 14 13 17 17 C 1.50698 * 119.71606 * 180.24569 * 16 15 14 18 18 F 1.39896 * 109.47077 * 120.24511 * 17 16 15 19 19 F 1.39900 * 109.46934 * 240.24688 * 17 16 15 20 20 C 1.53184 * 109.31637 * 298.63594 * 6 5 4 21 21 N 1.46928 * 108.77752 * 54.63557 * 20 6 5 22 22 C 1.36930 * 120.63025 * 126.11424 * 21 20 6 23 23 H 1.08006 * 120.00027 * 209.12934 * 22 21 20 24 24 C 1.38816 * 120.00243 * 29.14141 * 22 21 20 25 25 N 1.31612 * 119.99748 * 15.07593 * 24 22 21 26 26 Si 1.86796 * 120.00120 * 195.08009 * 24 22 21 27 27 H 1.48500 * 109.47032 * 89.99376 * 26 24 22 28 28 H 1.48494 * 109.47144 * 209.99508 * 26 24 22 29 29 H 1.48500 * 109.46905 * 329.99873 * 26 24 22 30 30 H 1.08999 * 109.46642 * 299.65027 * 1 2 3 31 31 H 1.08998 * 109.46990 * 59.64663 * 1 2 3 32 32 H 1.08996 * 109.47351 * 179.64507 * 1 2 3 33 33 H 1.09005 * 109.49282 * 65.63188 * 4 2 1 34 34 H 1.08994 * 109.49835 * 305.53492 * 4 2 1 35 35 H 1.09001 * 109.45763 * 301.35066 * 5 4 2 36 36 H 1.09004 * 109.45050 * 181.38483 * 5 4 2 37 37 H 0.97010 * 120.00189 * 335.14004 * 8 6 5 38 38 H 1.08001 * 120.85520 * 0.02562 * 12 11 9 39 39 H 1.08003 * 120.34851 * 179.97438 * 13 12 11 40 40 H 1.08000 * 119.45938 * 179.97438 * 14 13 12 41 41 H 1.08999 * 109.47070 * 0.24050 * 17 16 15 42 42 H 1.08999 * 109.58564 * 294.84902 * 20 6 5 43 43 H 1.09003 * 109.70697 * 174.49375 * 20 6 5 44 44 H 0.97000 * 120.00162 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8976 1.0261 0.0000 4 6 2.0436 -0.7295 -1.2454 5 6 3.5675 -0.8482 -1.1701 6 6 3.9568 -1.6658 0.0636 7 1 5.0412 -1.7697 0.1038 8 7 3.3411 -2.9928 -0.0143 9 6 3.8964 -4.0328 0.6388 10 8 4.9080 -3.8696 1.2928 11 6 3.2747 -5.3718 0.5607 12 6 2.1086 -5.5727 -0.1879 13 6 1.5668 -6.8452 -0.2291 14 6 2.1883 -7.8684 0.4643 15 7 3.2865 -7.6496 1.1617 16 6 3.8427 -6.4577 1.2276 17 6 5.1007 -6.2639 2.0345 18 9 6.1238 -5.8022 1.1995 19 9 4.8659 -5.3268 3.0463 20 6 3.4650 -0.9470 1.3238 21 7 2.0225 -0.6996 1.1945 22 6 1.1531 -1.1180 2.1661 23 1 0.1361 -1.3735 1.9072 24 6 1.5786 -1.2138 3.4840 25 7 2.6995 -0.6337 3.8573 26 14 0.5605 -2.1658 4.7275 27 1 0.9987 -3.5846 4.7435 28 1 0.7475 -1.5747 6.0768 29 1 -0.8741 -2.0951 4.3505 30 1 -0.3632 0.5084 0.8931 31 1 -0.3633 0.5193 -0.8868 32 1 -0.3634 -1.0276 -0.0064 33 1 1.7661 -0.1669 -2.1368 34 1 1.6029 -1.7254 -1.2912 35 1 4.0061 0.1472 -1.0992 36 1 3.9376 -1.3451 -2.0669 37 1 2.5336 -3.1230 -0.5359 38 1 1.6444 -4.7556 -0.7202 39 1 0.6678 -7.0374 -0.7960 40 1 1.7674 -8.8626 0.4343 41 1 5.3962 -7.2136 2.4804 42 1 3.9903 0.0019 1.4317 43 1 3.6520 -1.5697 2.1987 44 1 2.9972 -0.7009 4.7780 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071674660.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:31:30 Heat of formation + Delta-G solvation = -90.932844 kcal Electronic energy + Delta-G solvation = -31718.334623 eV Core-core repulsion = 27306.394177 eV Total energy + Delta-G solvation = -4411.940445 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -49.84817 -47.86244 -41.76179 -40.51079 -39.01486 -35.86792 -34.61588 -34.04431 -33.24697 -31.91429 -31.65608 -28.15506 -27.68724 -26.75316 -25.59977 -23.92045 -23.56063 -22.36467 -21.93482 -20.40321 -19.31619 -18.58496 -18.39274 -18.18632 -18.14110 -17.19664 -17.09390 -16.40372 -16.14303 -16.06055 -15.83635 -15.63996 -15.22822 -15.00288 -14.70853 -14.63477 -14.37242 -14.26019 -14.14816 -14.08852 -14.01671 -13.60911 -13.22897 -13.01907 -12.85143 -12.64416 -12.55791 -12.41180 -12.33260 -12.10608 -12.06544 -11.57804 -11.22803 -11.14389 -11.10940 -11.02886 -10.67774 -10.52073 -10.40258 -9.93556 -8.57470 -7.81724 -5.26622 -0.56619 -0.04997 1.36876 1.40576 1.47296 1.84637 2.18105 2.37324 2.48941 2.65183 3.19014 3.33947 3.35090 3.58602 3.64217 3.70630 3.88790 4.01873 4.05185 4.09999 4.12300 4.18524 4.27789 4.38068 4.49755 4.66243 4.74814 4.80716 4.83677 4.93691 4.97322 5.05153 5.09365 5.12371 5.27271 5.32553 5.42517 5.58909 5.62155 5.68070 5.73827 5.77160 6.44294 6.54096 6.63058 7.18807 7.28887 7.93960 8.44348 9.23180 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.010373 B = 0.005351 C = 0.004805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2698.676848 B = 5231.734445 C = 5826.163043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.152 3.848 3 H 0.012 0.988 4 C -0.118 4.118 5 C -0.110 4.110 6 C 0.130 3.870 7 H 0.062 0.938 8 N -0.680 5.680 9 C 0.539 3.461 10 O -0.557 6.557 11 C -0.166 4.166 12 C -0.047 4.047 13 C -0.137 4.137 14 C 0.116 3.884 15 N -0.478 5.478 16 C 0.075 3.925 17 C 0.325 3.675 18 F -0.198 7.198 19 F -0.207 7.207 20 C 0.171 3.829 21 N -0.593 5.593 22 C -0.232 4.232 23 H 0.080 0.920 24 C -0.056 4.056 25 N -0.935 5.935 26 Si 0.945 3.055 27 H -0.303 1.303 28 H -0.302 1.302 29 H -0.256 1.256 30 H 0.033 0.967 31 H 0.076 0.924 32 H 0.054 0.946 33 H 0.092 0.908 34 H 0.066 0.934 35 H 0.072 0.928 36 H 0.086 0.914 37 H 0.406 0.594 38 H 0.166 0.834 39 H 0.198 0.802 40 H 0.213 0.787 41 H 0.152 0.848 42 H -0.006 1.006 43 H 0.047 0.953 44 H 0.240 0.760 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.555 -12.920 -15.982 21.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.047 3.953 3 H 0.030 0.970 4 C -0.157 4.157 5 C -0.148 4.148 6 C 0.024 3.976 7 H 0.080 0.920 8 N -0.332 5.332 9 C 0.325 3.675 10 O -0.436 6.436 11 C -0.172 4.172 12 C -0.073 4.073 13 C -0.156 4.156 14 C -0.041 4.041 15 N -0.187 5.187 16 C -0.064 4.064 17 C 0.271 3.729 18 F -0.179 7.179 19 F -0.188 7.188 20 C 0.044 3.956 21 N -0.316 5.316 22 C -0.363 4.363 23 H 0.098 0.902 24 C -0.251 4.251 25 N -0.583 5.583 26 Si 0.776 3.224 27 H -0.231 1.231 28 H -0.230 1.230 29 H -0.180 1.180 30 H 0.052 0.948 31 H 0.095 0.905 32 H 0.073 0.927 33 H 0.111 0.889 34 H 0.084 0.916 35 H 0.091 0.909 36 H 0.105 0.895 37 H 0.244 0.756 38 H 0.184 0.816 39 H 0.215 0.785 40 H 0.229 0.771 41 H 0.169 0.831 42 H 0.012 0.988 43 H 0.066 0.934 44 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -3.401 -13.384 -14.929 20.337 hybrid contribution -0.486 0.826 1.129 1.481 sum -3.888 -12.558 -13.800 19.059 Atomic orbital electron populations 1.21719 0.94471 1.01518 1.00798 1.20803 0.94314 0.93200 0.86986 0.96980 1.21962 0.94400 1.01174 0.98135 1.21672 0.97586 0.99799 0.95755 1.21491 0.96215 0.82085 0.97811 0.91977 1.45524 1.29558 1.07667 1.50451 1.18434 0.84314 0.85081 0.79716 1.90842 1.26327 1.85240 1.41187 1.20931 0.99574 0.94113 1.02545 1.22193 0.91315 1.00047 0.93760 1.22779 1.02043 0.91469 0.99321 1.23830 0.88780 1.02163 0.89346 1.67341 1.12347 1.20582 1.18423 1.21711 0.97235 0.90164 0.97308 1.20306 0.82797 0.90073 0.79757 1.92977 1.60579 1.91162 1.73219 1.93036 1.94857 1.69940 1.61016 1.20845 0.84328 0.95185 0.95271 1.44237 1.02013 1.65326 1.20068 1.19417 0.95118 1.35367 0.86355 0.90231 1.25724 0.98848 1.01465 0.99038 1.70147 1.25333 1.46659 1.16126 0.85573 0.79745 0.77954 0.79170 1.23073 1.22955 1.17967 0.94813 0.90533 0.92662 0.88933 0.91589 0.90933 0.89543 0.75619 0.81618 0.78518 0.77097 0.83063 0.98792 0.93447 0.95075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.06 7.94 71.98 0.57 -3.49 16 2 C 0.15 5.52 3.50 44.98 0.16 5.68 16 3 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 4 C -0.12 -3.09 5.21 30.67 0.16 -2.93 16 5 C -0.11 -3.10 5.59 30.62 0.17 -2.93 16 6 C 0.13 4.99 2.81 45.07 0.13 5.12 16 7 H 0.06 2.58 7.58 -2.38 -0.02 2.56 16 8 N -0.68 -23.86 4.87 -445.06 -2.17 -26.03 16 9 C 0.54 21.57 7.55 86.79 0.66 22.22 16 10 O -0.56 -27.09 11.00 -3.89 -0.04 -27.13 16 11 C -0.17 -5.39 5.85 -19.99 -0.12 -5.50 16 12 C -0.05 -1.02 9.65 22.73 0.22 -0.80 16 13 C -0.14 -1.94 10.10 22.33 0.23 -1.72 16 14 C 0.12 1.91 11.17 84.71 0.95 2.86 16 15 N -0.48 -12.28 10.24 -182.85 -1.87 -14.15 16 16 C 0.07 2.43 6.31 42.89 0.27 2.70 16 17 C 0.32 11.47 5.02 71.24 0.36 11.83 16 18 F -0.20 -7.69 15.04 44.97 0.68 -7.01 16 19 F -0.21 -9.34 15.02 44.97 0.68 -8.66 16 20 C 0.17 8.54 4.90 86.36 0.42 8.96 16 21 N -0.59 -27.89 2.91 -675.21 -1.96 -29.86 16 22 C -0.23 -12.18 8.60 84.04 0.72 -11.46 16 23 H 0.08 3.94 6.20 -2.91 -0.02 3.92 16 24 C -0.06 -3.23 4.96 84.86 0.42 -2.81 16 25 N -0.94 -58.98 11.14 21.65 0.24 -58.74 16 26 Si 0.95 47.26 29.58 68.60 2.03 49.29 16 27 H -0.30 -15.66 7.11 99.48 0.71 -14.95 16 28 H -0.30 -15.53 7.11 99.48 0.71 -14.83 16 29 H -0.26 -11.57 7.11 99.48 0.71 -10.87 16 30 H 0.03 1.24 7.63 -2.39 -0.02 1.22 16 31 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 32 H 0.05 1.70 7.43 -2.39 -0.02 1.69 16 33 H 0.09 1.84 8.14 -2.38 -0.02 1.82 16 34 H 0.07 1.58 6.40 -2.39 -0.02 1.57 16 35 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 36 H 0.09 1.93 8.14 -2.38 -0.02 1.91 16 37 H 0.41 11.45 4.88 -92.70 -0.45 10.99 16 38 H 0.17 2.71 6.52 -2.91 -0.02 2.69 16 39 H 0.20 0.84 8.06 -2.91 -0.02 0.81 16 40 H 0.21 1.46 8.06 -2.91 -0.02 1.43 16 41 H 0.15 4.04 8.11 -2.39 -0.02 4.02 16 42 H -0.01 -0.32 8.14 -2.39 -0.02 -0.34 16 43 H 0.05 2.89 6.05 -2.39 -0.01 2.88 16 44 H 0.24 15.16 8.31 -92.71 -0.77 14.39 16 Total: -1.00 -82.78 354.36 3.48 -79.30 By element: Atomic # 1 Polarization: 14.68 SS G_CDS: 0.59 Total: 15.27 kcal Atomic # 6 Polarization: 22.41 SS G_CDS: 5.31 Total: 27.72 kcal Atomic # 7 Polarization: -123.02 SS G_CDS: -5.76 Total: -128.78 kcal Atomic # 8 Polarization: -27.09 SS G_CDS: -0.04 Total: -27.13 kcal Atomic # 9 Polarization: -17.02 SS G_CDS: 1.35 Total: -15.67 kcal Atomic # 14 Polarization: 47.26 SS G_CDS: 2.03 Total: 49.29 kcal Total: -82.78 3.48 -79.30 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071674660.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.633 kcal (2) G-P(sol) polarization free energy of solvation -82.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds